Aim

In more than 100 samples, 35,500 reporters for 86 TFs were transfected into various cells (mainly mES, K562 & HepG2), and stimulated with various compounds. All the barcode counts from the 7 different sequencing runs are combined in this analysis. In this scripts, sanity checks will be carried out to filter out samples with bad quality, and barcode counts will be normalized to compute reporter activitites. To be more precise, the data consists of two different libraries, library 1, which is more focused on mES biology, and library 2, which is more focused on classical signaling pathways.


Setup

Libraries

knitr::opts_chunk$set(echo = TRUE)
StartTime <-Sys.time()

# 8-digit Date tag:
Date <- substr(gsub("-","",Sys.time()),1,8) 
# libraries:
library(data.table)
library(plyr)
library(stringr)
library(ggpubr)
library(GGally)
library(vwr)
library(dplyr)
library(tibble)
library(plotly)
library(ggbeeswarm)
library(haven)
library(readr)
library(parallel)
library(RColorBrewer)
library(gridExtra)
library(LncFinder)
library(tidyr)
library(grr)
library(viridis)
library(DESeq2)
library(PCAtools)
library(pheatmap)

Functions

# Custom functions
SetFileName <- function(filename, initials) {
  # Set filename with extension and initials to make filename with date integrated.
  filename <- substitute(filename)
  initials <- substitute(initials)
  filename <- paste0(initials, Date, filename)
  filename
}

ReadFasta<-function(file) {
   # Read the file line by line
   fasta<-readLines(file)
   # Identify header lines
   ind<-grep(">", fasta)
   # Identify the sequence lines
   s<-data.frame(ind=ind, from=ind+1, to=c((ind-1)[-1], length(fasta)))
   # Process sequence lines
   seqs<-rep(NA, length(ind))
   for(i in 1:length(ind)) {
      seqs[i]<-paste(fasta[s$from[i]:s$to[i]], collapse="")
   }
   # Create a data frame 
   DF<-data.frame(name=gsub(">", "", fasta[ind]), sequence=seqs)
   # Return the data frame as a result object from the function
   return(DF)
}

# From Fede:
# ggpairs custom functions
corColor <- function(data, mapping, color = I("black"), sizeRange = c(1, 3), ...) {

  x   <- eval_data_col(data, mapping$x)
  y   <- eval_data_col(data, mapping$y)
  r   <- cor(x, y, "pairwise.complete.obs")
  rt  <- format(r, digits = 3)
  tt  <- as.character(rt)
  cex <- max(sizeRange)

  # helper function to calculate a useable size
  percent_of_range <- function(percent, range) {
    percent * diff(range) + min(range, na.rm = TRUE)
  }

  # plot correlation coefficient
  p <- ggally_text(label = tt, mapping = aes(), xP = 0.5, yP = 0.5,
                   size = I(percent_of_range(cex * abs(r), sizeRange)), color = color, ...) +
    theme(panel.grid.minor=element_blank(),
          panel.grid.major=element_blank())

  corColors <- RColorBrewer::brewer.pal(n = 7, name = "RdYlBu")[2:6]

  if (r <= boundaries[1]) {
    corCol <- corColors[1]
  } else if (r <= boundaries[2]) {
    corCol <- corColors[2]
  } else if (r < boundaries[3]) {
    corCol <- corColors[3]
  } else if (r < boundaries[4]) {
    corCol <- corColors[4]
  } else {
    corCol <- corColors[5]
  }

  p <- p +
    theme(panel.background = element_rect(fill = corCol))

  return(p)
}

# Custom ggplot2 themes
theme_classic_lines <- function() {
  theme_pubr(border = T, legend = "top") +
            theme(panel.grid.major = element_line(colour = "#adb5bd", size = 0.1),
                  strip.background = element_rect(fill = "#ced4da"))
    
}

theme_classic_lines_45 <- function() {
  theme_pubr(border = T, legend = "top", x.text.angle = 45) +
            theme(panel.grid.major = element_line(colour = "#adb5bd", size = 0.1),
                  strip.background = element_rect(fill = "#ced4da"))
}

theme_classic_lines_90 <- function() {
  theme_pubr(border = T,legend = "top", x.text.angle = 90) +
            theme(panel.grid.major = element_line(colour = "#adb5bd", size = 0.1),
                  strip.background = element_rect(fill = "#ced4da"))
}

theme_set(theme_classic_lines())

colors_diverse <- c("#264653", "#2a9d8f", "#e9c46a", "#f4a261", "#e76f51")

ggplot_custom <- function(...) ggplot2::ggplot(...) + 
  scale_color_manual(values = colors_diverse) + 
  scale_fill_manual(values = colors_diverse)


hline <- function(y = 0, color = "black") {
  list(
    type = "line",
    x0 = 0,
    x1 = 1,
    xref = "paper",
    y0 = y,
    y1 = y,
    line = list(color = color)
  )
}

Loading data

# Load metadata file that contains all required information about the sequenced samples
metadata_df <- read_csv2("/DATA/usr/m.trauernicht/projects/SuRE-TF/data/gcf6578_gen2_stimulation-2/mt20211025_metadata_all_experiments.csv")

# Load in barcode counts
bc_files <- paste(metadata_df$path, metadata_df$file, sep = "")
bc_files <- lapply(bc_files, fread, header = FALSE)
names(bc_files) <- metadata_df$id


# Import barcode annotation of both libraries
bc_annotation <- read_csv2("/DATA/usr/m.trauernicht/projects/SuRE-TF/data/gcf6578_gen2_stimulation-2/mt20211021_bc_annotation_combined.csv") %>%
  dplyr::select(-library)

Creating count data frames

# Generate one long data frame from the list of data frames
bc_df <- bind_rows(bc_files, .id = "sample_id") %>%
  dplyr::select(sample_id, "barcode" = V1, "starcode_counts" = V2)

# Library 1 has barcodes of length 12 while library 2 has barcodes of length 13
# For sequencing samples that have library 1 and 2 mixed I extracted barcodes of length >=12
# So, I will now filter out all barcodes with length >13, because those are not relevant
bc_df$nchar <- nchar(bc_df$barcode)
bc_df <- bc_df %>%
  filter(nchar <= 13)

# Add barcode annotation to the data
bc_df <- merge(bc_df, bc_annotation, all = T)

# Add experiment annotation to the data
metadata_selected <- metadata_df %>%
  dplyr::select('sample_id' = id, gcf, replicate, condition, sample, library)
bc_df <- merge(bc_df, metadata_selected, all = T, by = "sample_id")

bc_df$starcode_counts[is.na(bc_df$starcode_counts)] <- 0

# First compute reads per million to estimate the relative counts in the respective sample
bc_df <- bc_df %>%
  mutate(rpm = ave(starcode_counts, sample_id, FUN = function(x) (x+1) / sum(x) *1e6 ))

bc_df_filt <- bc_df[!is.na(bc_df$tf),]
bc_df_unmatched <- bc_df[is.na(bc_df$tf),]

Correlate and cluster individual samples

# Make dataframe to compare raw counts between conditions
bc_df_filt <- bc_df_filt[!is.na(bc_df_filt$sample),]
bc_df_cor <- bc_df_filt %>%
  dplyr::select(-starcode_counts)

bc_df_cor <- bc_df_cor %>%
  dplyr::select(sample_id, barcode, library, rpm) %>%
  unique() %>%
  mutate(rpm = as.integer(rpm)) %>%
  spread(sample_id, rpm) 

bc_df_cor[is.na(bc_df_cor)] <- 0


## Here I want to take a quick look how well individual samples correlate
# Compare pDNA data
plot(bc_df_cor$pMT09_02_r1_gcf6502, bc_df_cor$pMT09_02_r1_gcf6578)

plot(bc_df_cor$pMT09_r1_gcf6578, bc_df_cor$pMT09_r1_gcf6502)

# Convert into data.frame with row.names for deseq2
bc_df_cor2 <- bc_df_cor %>%
  filter(library == "2") %>%
  dplyr::select(matches("barcode|gcf6578|pMT09_r2_gcf6502|pMT09_r1_gcf6502")) %>%
  dplyr::select(-pMT09_02_r1_gcf6578) %>%
  column_to_rownames("barcode") 

bc_df_cor3 <- bc_df_cor %>%
  filter(library == "1") %>%
  dplyr::select(matches("barcode|gcf5927|gcf6139|gcf6210|gcf6301")) %>%
  column_to_rownames("barcode") 

bc_df_cor4 <- bc_df_cor %>%
  filter(library == "1+2") %>%
  dplyr::select(matches("barcode|gcf6502|pMT09_02_r1_gcf6578")) %>%
  dplyr::select(-pMT09_r1_gcf6502, -pMT09_r2_gcf6502) %>%
  column_to_rownames("barcode") 


#######################################
## Initialize deseq2

# Prepare metadata ready for deseq
metadata <- metadata_df %>%
  filter(id %in% names(bc_df_cor4)) %>%
  dplyr::select("replicate", "condition", "gcf", "id") %>%
  unique()

# Initialize
rnaseq_dds <- DESeqDataSetFromMatrix(countData = bc_df_cor4,
                                     colData = metadata,
                                     design= ~ condition)

# Execute deseq2
rnaseq_dds <- DESeq(rnaseq_dds)


#######################################
## PCA analysis - quality control

# Get the "normalized" values and create PCA plot
rnaseq_dds_norm <- assay(vst(rnaseq_dds))
metadata <- metadata %>% 
           column_to_rownames("id")
rownames(metadata) = colnames(bc_df_cor4)

p <- pca(bc_df_cor4, metadata, removeVar = 0.1)

biplot(p, 
       colby = "condition", 
       shape = "gcf", 
       legendPosition = "right",
       legendLabSize = 8,
       legendTitleSize = 8,
       legendIconSize = 3, 
       lab = "")

## Correlation heatmap
# bc_df_cor4$mean <- rowMeans(bc_df_cor4)
# bc_df_cor4 <- bc_df_cor4 %>%
#   filter(mean > 200) %>%
#   dplyr::select(-mean)

cor_df <- cor(bc_df_cor3, method = "pearson")

pheatmap(cor_df, border_color = "black")

# Get cluster information
clusters <- hclust(dist(cor_df))
cutree(clusters, h = 7) 
##   A549_Dex_100_r1_gcf6210   A549_Dex_100_r3_gcf6210      A549_DMSO_r1_gcf6210 
##                         1                         1                         1 
##      A549_DMSO_r3_gcf6210    A549_Nutlin_r1_gcf6210    A549_Nutlin_r2_gcf6210 
##                         1                         1                         1 
##    A549_Nutlin_r3_gcf6210     mES_2i_LIF_r1_gcf5927     mES_2i_LIF_r2_gcf5927 
##                         1                         1                         1 
##     mES_2i_LIF_r3_gcf5927     mES_2i_LIF_r3_gcf6139         mES_2i_r1_gcf5927 
##                         1                         1                         1 
##         mES_2i_r2_gcf5927         mES_2i_r3_gcf5927       mES_4OHT_r2_gcf6139 
##                         1                         1                         1 
##       mES_Bmp4_r3_gcf6139        mES_Dex_r3_gcf6139         mES_FK_r2_gcf6139 
##                         1                         1                         1 
##         mES_FK_r3_gcf6139         mES_HQ_r2_gcf6139         mES_HQ_r3_gcf6139 
##                         1                         1                         1 
##     mES_LIF_CH_r2_gcf5927     mES_LIF_CH_r3_gcf5927     mES_LIF_PD_r1_gcf5927 
##                         1                         1                         1 
##     mES_LIF_PD_r2_gcf5927     mES_LIF_PD_r3_gcf5927        mES_LPS_r2_gcf6139 
##                         1                         1                         1 
##        mES_LPS_r3_gcf6139 mES_N2B27_Bmp4_r1_gcf6210 mES_N2B27_Bmp4_r2_gcf6210 
##                         1                         1                         1 
## mES_N2B27_Bmp4_r3_gcf6210      mES_N2B27_r1_gcf5927      mES_N2B27_r2_gcf5927 
##                         1                         1                         1 
##      mES_N2B27_r3_gcf5927   mES_N2B27_RA_r1_gcf6210   mES_N2B27_RA_r2_gcf6210 
##                         1                         1                         1 
##   mES_N2B27_RA_r3_gcf6210  mES_N2B27_Shh_r1_gcf6210  mES_N2B27_Shh_r2_gcf6210 
##                         1                         1                         1 
##  mES_N2B27_Shh_r3_gcf6210     mES_Nutlin_r3_gcf6139         mES_RA_r3_gcf6139 
##                         1                         1                         1 
##        mES_Shh_r2_gcf6139        mES_Shh_r3_gcf6139       mES_vitA_r1_gcf5927 
##                         1                         1                         1 
##       mES_vitA_r2_gcf5927       mES_vitA_r3_gcf5927            NPC_r1_gcf5927 
##                         1                         1                         1 
##            NPC_r2_gcf5927            NPC_r3_gcf5927          pMT02_r1_gcf5927 
##                         1                         1                         1 
##          pMT02_r1_gcf6301          pMT02_r2_gcf5927      U2OS_DMSO_r1_gcf6210 
##                         1                         1                         1 
##      U2OS_DMSO_r2_gcf6210      U2OS_DMSO_r3_gcf6210        U2OS_FK_r1_gcf6210 
##                         1                         1                         1 
##        U2OS_FK_r2_gcf6210        U2OS_FK_r3_gcf6210       U2OS_LPS_r1_gcf6210 
##                         1                         1                         1 
##       U2OS_LPS_r2_gcf6210 
##                         1
plot(clusters)
abline(h = 3, col = "red")

# Apply cutree() to hclust.pokemon: cut.pokemon
cut.pokemon<-cutree(clusters,k=3)
##############################################################
# Initialize total within sum of squares error: wss
wss <- 0
# Look over 1 to 15 possible clusters
for (i in 1:15) {
  # Fit the model: km.pokemon
  km.pokemon <- kmeans(cor_df, centers = i, nstart = 20, iter.max = 50)
  # Save the within cluster sum of squares
  wss[i] <- km.pokemon$tot.withinss
}
# Produce a scree plot
plot(1:15, wss, type = "b", 
     xlab = "Number of Clusters", 
     ylab = "Within groups sum of squares")


Data quality plots

# I want to show the following:
## 1: Read distribution of matched barcodes vs. unmatched barcode

### a: total read counts per sample
for (i in unique(bc_df$library)) {
  bc_df_i <- bc_df[bc_df$library == i,]
  p <- plot_ly(bc_df_i %>%
         mutate(sum_counts = ave(starcode_counts, sample, FUN = function(x) sum(x))) %>%
         dplyr::select(sample, sum_counts) %>%
         unique(), 
        x = ~sum_counts, y = ~sample, type = 'bar',
             marker = list(color = '#D6D5C9',
                           line = list(color = 'rgb(8,48,107)', width = 1.5))) %>% 
  layout(title = paste("Number of reads per barcode per sample", i),
         xaxis = list(title = "Expected number of reads per barcode per sample"),
         yaxis = list(title = "Sample"))
  print(p)
}


### b: read counts per TF
bc_df_filt <- bc_df[!is.na(bc_df$tf),]

ggplot_custom(bc_df_filt %>%
         filter(neg_ctrls == "No", native_enhancer == "No", commercial_reporter == "No", hPGK == "No", rand_promoter == "No"), aes(x = rpm, y = tf)) +
  geom_violin() +
  theme(axis.text.y = element_text(size = 6)) +
  xlim(0,5000) +
  facet_wrap(~condition)

bc_df_2 <- bc_df[bc_df$rpm <= 250,]
bc_df_2 <- bc_df_2[bc_df_2$rpm >= 0.5,]
bc_df_2 <- bc_df_2[!is.na(bc_df_2$tf),]

ggplot_custom(bc_df_2, aes(x = rpm)) +
  geom_histogram(binwidth = 20) +
  xlim(0,250)+
  ylim(0,6000)+
  facet_wrap(~sample_id)

ggplot_custom(bc_df[bc_df$rpm >= 500 & !is.na(bc_df$tf),], aes(x = rpm)) +
  geom_histogram(binwidth = 20) +
  xlim(250,1000)+
  ylim(0,50)+
  facet_wrap(~sample_id)

n_highly_expressed <- data.frame("sample_id" = unique(bc_df$sample_id),
                                 "n_bc" = "", stringsAsFactors = F)
for (i in unique(bc_df$sample_id)) {
  n_highly_expressed$n_bc[n_highly_expressed$sample_id == i] <- length(bc_df$barcode[bc_df$rpm > 500 & bc_df$sample_id == i])
}

plot_ly(n_highly_expressed, x = ~sample_id, y = ~as.numeric(n_bc), type = 'bar',
             marker = list(color = '#D6D5C9',
                           line = list(color = 'rgb(8,48,107)', width = 1.5))) %>% 
  layout(title = "Highly expressed barcodes",
         xaxis = list(title = "Number of barcodes with > 500 rpm"),
         yaxis = list(title = "Condition")) %>%
  layout(shapes = list(hline(100)))
## 2: How many barcodes can I find back at which cutoff? + What is the percentage of barcode reads that match the design at which cutoff?
## Identify the unmapped fraction
bc_fraction <- bc_df %>%
  dplyr::select(sample_id, library) %>%
  unique() %>%
  na.omit() 
rpm_cutoff <- data.frame("cutoff" = seq(0.0001,15,3))
bc_fraction <- expand_grid(bc_fraction, rpm_cutoff)
bc_fraction <- bc_fraction %>%
  mutate(sample_id = paste(sample_id, library, sep = "_"))

bc_annotation2 <- bc_annotation %>%
  mutate(nchar = nchar(bc_annotation$barcode))

bc_counts_design <- data.frame("library" = c("1", "2", "1+2"),
                               "bc_counts" = c(nrow(bc_annotation2[bc_annotation2$nchar == 12,]),
                                               nrow(bc_annotation2[bc_annotation2$nchar == 13,]),
                                               nrow(bc_annotation2)))

bc_fraction_list <- list()
for (i in unique(bc_fraction$sample_id)) {
  print(i)
  test_x <- bc_df_filt %>%
    mutate(sample_id = paste(sample_id, library, sep = "_")) %>%
    filter(sample_id == i)
  library <- unique(test_x$library)
  
  bc_fraction_list[[i]] <- lapply(unique(bc_fraction$cutoff), function(x) nrow(test_x[test_x$rpm >= x]) / bc_counts_design$bc_counts[bc_counts_design$library == library] *100)
  names(bc_fraction_list[[i]]) <- unique(bc_fraction$cutoff)
}
## [1] "A549_DMSO_r1_gcf6210_1"
## [1] "A549_DMSO_r3_gcf6210_1"
## [1] "A549_Dex_100_r1_gcf6210_1"
## [1] "A549_Dex_100_r3_gcf6210_1"
## [1] "A549_Nutlin_r1_gcf6210_1"
## [1] "A549_Nutlin_r2_gcf6210_1"
## [1] "A549_Nutlin_r3_gcf6210_1"
## [1] "HepG2_CDCA_r1_gcf6502_1+2"
## [1] "HepG2_CDCA_r2_gcf6502_1+2"
## [1] "HepG2_DMSO_FBS_r1_gcf6502_1+2"
## [1] "HepG2_DMSO_r1_gcf6502_1+2"
## [1] "HepG2_DMSO_r2_gcf6502_1+2"
## [1] "HepG2_DMSO_r3_gcf6502_1+2"
## [1] "HepG2_Rif_r1_gcf6502_1+2"
## [1] "HepG2_Rif_r2_gcf6502_1+2"
## [1] "HepG2_Rif_r3_gcf6502_1+2"
## [1] "HepG2_T09_r1_gcf6502_1+2"
## [1] "HepG2_T09_r2_gcf6502_1+2"
## [1] "HepG2_T09_r3_gcf6502_1+2"
## [1] "HepG2_Wy_r1_gcf6502_1+2"
## [1] "HepG2_Wy_r2_gcf6502_1+2"
## [1] "K562_DMSO_r1_gcf6371_1"
## [1] "K562_DMSO_r1_gcf6502_1+2"
## [1] "K562_DMSO_r2_gcf6502_1+2"
## [1] "K562_DMSO_r3_gcf6502_1+2"
## [1] "NPC_r1_gcf5927_1"
## [1] "NPC_r2_gcf5927_1"
## [1] "NPC_r3_gcf5927_1"
## [1] "U2OS_DMSO_r1_gcf6210_1"
## [1] "U2OS_DMSO_r2_gcf6210_1"
## [1] "U2OS_DMSO_r3_gcf6210_1"
## [1] "U2OS_FK_r1_gcf6210_1"
## [1] "U2OS_FK_r2_gcf6210_1"
## [1] "U2OS_FK_r3_gcf6210_1"
## [1] "U2OS_LPS_r1_gcf6210_1"
## [1] "U2OS_LPS_r2_gcf6210_1"
## [1] "mES_2i_LIF_r1_gcf5927_1"
## [1] "mES_2i_LIF_r1_gcf6578_2"
## [1] "mES_2i_LIF_r2_gcf5927_1"
## [1] "mES_2i_LIF_r2_gcf6578_2"
## [1] "mES_2i_LIF_r3_gcf5927_1"
## [1] "mES_2i_LIF_r3_gcf6139_1"
## [1] "mES_2i_LIF_r3_gcf6578_2"
## [1] "mES_2i_r1_gcf5927_1"
## [1] "mES_2i_r1_gcf6578_2"
## [1] "mES_2i_r2_gcf5927_1"
## [1] "mES_2i_r2_gcf6578_2"
## [1] "mES_2i_r3_gcf5927_1"
## [1] "mES_2i_r3_gcf6578_2"
## [1] "mES_4OHT_r2_gcf6139_1"
## [1] "mES_Bmp4_r3_gcf6139_1"
## [1] "mES_Dex_r3_gcf6139_1"
## [1] "mES_FK_r2_gcf6139_1"
## [1] "mES_FK_r3_gcf6139_1"
## [1] "mES_HQ_r1_gcf6578_2"
## [1] "mES_HQ_r2_gcf6139_1"
## [1] "mES_HQ_r2_gcf6578_2"
## [1] "mES_HQ_r3_gcf6139_1"
## [1] "mES_HQ_r3_gcf6578_2"
## [1] "mES_LIF_CH_r1_gcf6578_2"
## [1] "mES_LIF_CH_r2_gcf5927_1"
## [1] "mES_LIF_CH_r2_gcf6578_2"
## [1] "mES_LIF_CH_r3_gcf5927_1"
## [1] "mES_LIF_CH_r3_gcf6578_2"
## [1] "mES_LIF_PD_r1_gcf5927_1"
## [1] "mES_LIF_PD_r1_gcf6578_2"
## [1] "mES_LIF_PD_r2_gcf5927_1"
## [1] "mES_LIF_PD_r2_gcf6578_2"
## [1] "mES_LIF_PD_r3_gcf5927_1"
## [1] "mES_LIF_PD_r3_gcf6578_2"
## [1] "mES_LPS_r2_gcf6139_1"
## [1] "mES_LPS_r3_gcf6139_1"
## [1] "mES_N2B27_Bmp4_r1_gcf6210_1"
## [1] "mES_N2B27_Bmp4_r2_gcf6210_1"
## [1] "mES_N2B27_Bmp4_r3_gcf6210_1"
## [1] "mES_N2B27_RA_r1_gcf6210_1"
## [1] "mES_N2B27_RA_r2_gcf6210_1"
## [1] "mES_N2B27_RA_r3_gcf6210_1"
## [1] "mES_N2B27_Shh_r1_gcf6210_1"
## [1] "mES_N2B27_Shh_r2_gcf6210_1"
## [1] "mES_N2B27_Shh_r3_gcf6210_1"
## [1] "mES_N2B27_r1_gcf5927_1"
## [1] "mES_N2B27_r1_gcf6578_2"
## [1] "mES_N2B27_r2_gcf5927_1"
## [1] "mES_N2B27_r2_gcf6578_2"
## [1] "mES_N2B27_r3_gcf5927_1"
## [1] "mES_N2B27_r3_gcf6578_2"
## [1] "mES_Nutlin_r3_gcf6139_1"
## [1] "mES_RA_r3_gcf6139_1"
## [1] "mES_Shh_r2_gcf6139_1"
## [1] "mES_Shh_r3_gcf6139_1"
## [1] "mES_vitA_r1_gcf5927_1"
## [1] "mES_vitA_r2_gcf5927_1"
## [1] "mES_vitA_r3_gcf5927_1"
## [1] "pMT02_r1_gcf5927_1"
## [1] "pMT02_r1_gcf6301_1"
## [1] "pMT02_r2_gcf5927_1"
## [1] "pMT09_02_r1_gcf6502_1+2"
## [1] "pMT09_02_r1_gcf6578_1+2"
## [1] "pMT09_r1_gcf6502_2"
## [1] "pMT09_r1_gcf6578_2"
## [1] "pMT09_r2_gcf6502_2"
## [1] "pMT09_r3_gcf6578_2"
bc_fraction_2 <- bind_rows(bc_fraction_list)
rownames(bc_fraction_2) <- names(bc_fraction_list)
bc_fraction_2 <- bc_fraction_2 %>%
  rownames_to_column("sample_id") %>%
  pivot_longer(-sample_id, names_to = "cutoff", values_to = "bcs_found") %>%
  mutate(cutoff = as.numeric(cutoff))

bc_fraction <- merge(bc_fraction, bc_fraction_2, by = c("sample_id", "cutoff"))


## How many reads match to designed barcodes?
bc_reads <- bc_df %>%
  dplyr::select(sample_id, library) %>%
  unique() %>%
  na.omit()
rpm_cutoff <- data.frame("cutoff" = seq(0.0001,15,3))
bc_reads <- expand_grid(bc_reads, rpm_cutoff) %>%
  mutate(sample_id = paste(sample_id, library, sep = "_"))

bc_df$match <- "Yes"
bc_df$match[is.na(bc_df$library)] <- "No"

bc_reads_list <- list()
for (i in unique(bc_reads$sample_id)) {
  print(i)
  test_x <- bc_df_filt %>%
    mutate(sample_id = paste(sample_id, library, sep = "_")) %>%
    filter(sample_id == i)
  test_y <- bc_df %>%
    mutate(sample_id = paste(sample_id, library, sep = "_")) %>%
    filter(sample_id == i)
  bc_reads_list[[i]] <- lapply(unique(bc_reads$cutoff), function(x) sum(na.omit(test_x$rpm[test_x$rpm >= x])) / sum(test_y$rpm[test_y$rpm >= x])  *100)
  names(bc_reads_list[[i]]) <- unique(bc_reads$cutoff)
}
## [1] "A549_DMSO_r1_gcf6210_1"
## [1] "A549_DMSO_r3_gcf6210_1"
## [1] "A549_Dex_100_r1_gcf6210_1"
## [1] "A549_Dex_100_r3_gcf6210_1"
## [1] "A549_Nutlin_r1_gcf6210_1"
## [1] "A549_Nutlin_r2_gcf6210_1"
## [1] "A549_Nutlin_r3_gcf6210_1"
## [1] "HepG2_CDCA_r1_gcf6502_1+2"
## [1] "HepG2_CDCA_r2_gcf6502_1+2"
## [1] "HepG2_DMSO_FBS_r1_gcf6502_1+2"
## [1] "HepG2_DMSO_r1_gcf6502_1+2"
## [1] "HepG2_DMSO_r2_gcf6502_1+2"
## [1] "HepG2_DMSO_r3_gcf6502_1+2"
## [1] "HepG2_Rif_r1_gcf6502_1+2"
## [1] "HepG2_Rif_r2_gcf6502_1+2"
## [1] "HepG2_Rif_r3_gcf6502_1+2"
## [1] "HepG2_T09_r1_gcf6502_1+2"
## [1] "HepG2_T09_r2_gcf6502_1+2"
## [1] "HepG2_T09_r3_gcf6502_1+2"
## [1] "HepG2_Wy_r1_gcf6502_1+2"
## [1] "HepG2_Wy_r2_gcf6502_1+2"
## [1] "K562_DMSO_r1_gcf6371_1"
## [1] "K562_DMSO_r1_gcf6502_1+2"
## [1] "K562_DMSO_r2_gcf6502_1+2"
## [1] "K562_DMSO_r3_gcf6502_1+2"
## [1] "NPC_r1_gcf5927_1"
## [1] "NPC_r2_gcf5927_1"
## [1] "NPC_r3_gcf5927_1"
## [1] "U2OS_DMSO_r1_gcf6210_1"
## [1] "U2OS_DMSO_r2_gcf6210_1"
## [1] "U2OS_DMSO_r3_gcf6210_1"
## [1] "U2OS_FK_r1_gcf6210_1"
## [1] "U2OS_FK_r2_gcf6210_1"
## [1] "U2OS_FK_r3_gcf6210_1"
## [1] "U2OS_LPS_r1_gcf6210_1"
## [1] "U2OS_LPS_r2_gcf6210_1"
## [1] "mES_2i_LIF_r1_gcf5927_1"
## [1] "mES_2i_LIF_r1_gcf6578_2"
## [1] "mES_2i_LIF_r2_gcf5927_1"
## [1] "mES_2i_LIF_r2_gcf6578_2"
## [1] "mES_2i_LIF_r3_gcf5927_1"
## [1] "mES_2i_LIF_r3_gcf6139_1"
## [1] "mES_2i_LIF_r3_gcf6578_2"
## [1] "mES_2i_r1_gcf5927_1"
## [1] "mES_2i_r1_gcf6578_2"
## [1] "mES_2i_r2_gcf5927_1"
## [1] "mES_2i_r2_gcf6578_2"
## [1] "mES_2i_r3_gcf5927_1"
## [1] "mES_2i_r3_gcf6578_2"
## [1] "mES_4OHT_r2_gcf6139_1"
## [1] "mES_Bmp4_r3_gcf6139_1"
## [1] "mES_Dex_r3_gcf6139_1"
## [1] "mES_FK_r2_gcf6139_1"
## [1] "mES_FK_r3_gcf6139_1"
## [1] "mES_HQ_r1_gcf6578_2"
## [1] "mES_HQ_r2_gcf6139_1"
## [1] "mES_HQ_r2_gcf6578_2"
## [1] "mES_HQ_r3_gcf6139_1"
## [1] "mES_HQ_r3_gcf6578_2"
## [1] "mES_LIF_CH_r1_gcf6578_2"
## [1] "mES_LIF_CH_r2_gcf5927_1"
## [1] "mES_LIF_CH_r2_gcf6578_2"
## [1] "mES_LIF_CH_r3_gcf5927_1"
## [1] "mES_LIF_CH_r3_gcf6578_2"
## [1] "mES_LIF_PD_r1_gcf5927_1"
## [1] "mES_LIF_PD_r1_gcf6578_2"
## [1] "mES_LIF_PD_r2_gcf5927_1"
## [1] "mES_LIF_PD_r2_gcf6578_2"
## [1] "mES_LIF_PD_r3_gcf5927_1"
## [1] "mES_LIF_PD_r3_gcf6578_2"
## [1] "mES_LPS_r2_gcf6139_1"
## [1] "mES_LPS_r3_gcf6139_1"
## [1] "mES_N2B27_Bmp4_r1_gcf6210_1"
## [1] "mES_N2B27_Bmp4_r2_gcf6210_1"
## [1] "mES_N2B27_Bmp4_r3_gcf6210_1"
## [1] "mES_N2B27_RA_r1_gcf6210_1"
## [1] "mES_N2B27_RA_r2_gcf6210_1"
## [1] "mES_N2B27_RA_r3_gcf6210_1"
## [1] "mES_N2B27_Shh_r1_gcf6210_1"
## [1] "mES_N2B27_Shh_r2_gcf6210_1"
## [1] "mES_N2B27_Shh_r3_gcf6210_1"
## [1] "mES_N2B27_r1_gcf5927_1"
## [1] "mES_N2B27_r1_gcf6578_2"
## [1] "mES_N2B27_r2_gcf5927_1"
## [1] "mES_N2B27_r2_gcf6578_2"
## [1] "mES_N2B27_r3_gcf5927_1"
## [1] "mES_N2B27_r3_gcf6578_2"
## [1] "mES_Nutlin_r3_gcf6139_1"
## [1] "mES_RA_r3_gcf6139_1"
## [1] "mES_Shh_r2_gcf6139_1"
## [1] "mES_Shh_r3_gcf6139_1"
## [1] "mES_vitA_r1_gcf5927_1"
## [1] "mES_vitA_r2_gcf5927_1"
## [1] "mES_vitA_r3_gcf5927_1"
## [1] "pMT02_r1_gcf5927_1"
## [1] "pMT02_r1_gcf6301_1"
## [1] "pMT02_r2_gcf5927_1"
## [1] "pMT09_02_r1_gcf6502_1+2"
## [1] "pMT09_02_r1_gcf6578_1+2"
## [1] "pMT09_r1_gcf6502_2"
## [1] "pMT09_r1_gcf6578_2"
## [1] "pMT09_r2_gcf6502_2"
## [1] "pMT09_r3_gcf6578_2"
bc_reads_2 <- bind_rows(bc_reads_list)
rownames(bc_reads_2) <- names(bc_reads_list)
bc_reads_2 <- bc_reads_2 %>%
  rownames_to_column("sample_id") %>%
  pivot_longer(-sample_id, names_to = "cutoff", values_to = "bc_reads") %>%
  mutate(cutoff = as.numeric(cutoff))

bc_reads <- merge(bc_reads, bc_reads_2, by = c("sample_id", "cutoff"))


bc_fraction <- merge(bc_fraction, bc_reads, by = c("sample_id", "cutoff"))
bc_fraction$bcs_found <- as.numeric(bc_fraction$bcs_found)
bc_fraction$bc_reads <- as.numeric(bc_fraction$bc_reads)

#c("#1B998B", "#2D3047", "#FF9B71", "#ECDD7B")
# Plot to evaluate data quality per cutoff
ggplot_custom(bc_fraction) +
  geom_point(aes(x = cutoff, y = bcs_found), color = '#1B998B', size = 1) +
  geom_line(aes(x = cutoff, y = bcs_found), color = '#1B998B', size = 1) +
  geom_point(aes(x = cutoff, y = bc_reads), color = 'black', size = 1) +
  geom_line(aes(x = cutoff, y = bc_reads), color = 'black', size = 1) +
  xlab("rpm cutoff")+
  ylab("total barcodes (green) and matched barcode reads (black) detected (%)")+
  facet_wrap(~sample_id)

## 3: What is the correlation of the cDNA bc counts with the pDNA bc counts? 
pMT02 <- bc_df_filt %>%
  filter(str_detect(sample_id, "pMT02"), library == "1") %>%
  dplyr::select(barcode, sample_id, rpm) %>%
  spread(sample_id, rpm) %>%
  mutate(pMT02 = (pMT02_r1_gcf5927 + pMT02_r1_gcf6301 + pMT02_r2_gcf5927)/3) %>%
  dplyr::select(barcode, pMT02)

pMT09 <- bc_df_filt %>%
  filter(str_detect(sample_id, "pMT09"), library == "2") %>%
  dplyr::select(barcode, sample_id, rpm) %>%
  spread(sample_id, rpm) %>%
  mutate(pMT09 = (pMT09_r1_gcf6502 + pMT09_r1_gcf6578 + pMT09_r2_gcf6502 + pMT09_r3_gcf6578)/4) %>%
  dplyr::select(barcode, pMT09)

pMT09_02 <- bc_df_filt %>%
  filter(str_detect(sample_id, "pMT09_02"), library == "1+2") %>%
  dplyr::select(barcode, sample_id, rpm) %>%
  spread(sample_id, rpm) %>%
  mutate(pMT09_02 = (pMT09_02_r1_gcf6502 + pMT09_02_r1_gcf6578)/2) %>%
  dplyr::select(barcode, pMT09_02)

pDNA <- merge(pMT02, pMT09, all = T, by = "barcode")
pDNA <- merge(pDNA, pMT09_02, all = T, by = "barcode")


bc_df_2 <- merge(pDNA, bc_df_filt, all = T, by = "barcode")
bc_df_2 <- bc_df_2[!is.na(bc_df_2$sample_id),]

for (i in unique(bc_df_2$library)) {
  bc_df_i <- bc_df_2[bc_df_2$library == i,] 
  if (i == "1") {
  p <- ggplot(bc_df_i, aes(x = pMT02, y = rpm)) +
  geom_bin2d(bins = 50)+
  xlim(0,500) +
  ylim(0,2000)+
  scale_color_viridis() +
  facet_wrap(~sample_id)
  
  print(p)
  }
    if (i == "2") {
  p <- ggplot(bc_df_i, aes(x = pMT09, y = rpm)) +
  geom_bin2d(bins = 50)+
  xlim(0,500) +
  ylim(0,2000)+
  scale_color_viridis() +
  facet_wrap(~sample_id)
  
  print(p)
    }
   if (i == "1+2"){
  p <- ggplot(bc_df_i, aes(x = pMT09_02, y = rpm)) +
  geom_bin2d(bins = 50)+
  xlim(0,500) +
  ylim(0,2000)+
  scale_color_viridis() +
  facet_wrap(~sample_id)
  
  print(p)
  }
  
}

# Generate correlation heatmaps 
for (i in unique(bc_df_2$library)) {
  bc_df_i <- bc_df_2[bc_df_2$library == i,] %>%
    dplyr::select(sample_id, rpm, barcode)  %>% 
    unique() %>%
    spread(sample_id, rpm) %>% 
    filter_all(any_vars(!is.na(.))) %>%
    column_to_rownames("barcode")
  
  x <- cor(bc_df_i, method = "pearson", use = "pairwise.complete.obs")
  
  p<- pheatmap(x, border = "black", main = i)
  print(p)
}

bc_df_2$sample_id <- paste(bc_df_2$sample_id, bc_df_2$library, sep = "_")
cor <- data.frame("sample_id" = unique(bc_df_2$sample_id), "cor" = "", stringsAsFactors = F) %>%
  mutate(library = gsub(".*_(.*$)", "\\1", sample_id))

for (i in unique(bc_df_2$sample_id)) {
  for (j in unique(bc_df_2$library)) {
    if (j == "1") {
      cor$cor[cor$sample_id == i & cor$library == j] <- stats::cor(bc_df_2$rpm[bc_df_2$sample_id == i], bc_df_2$pMT02[bc_df_2$sample_id == i], use = "pairwise.complete.obs")
    }
    if (j == "1+2") {
      cor$cor[cor$sample_id == i & cor$library == j] <- stats::cor(bc_df_2$rpm[bc_df_2$sample_id == i], bc_df_2$pMT09_02[bc_df_2$sample_id == i], use = "pairwise.complete.obs")
    }
        if (j == "2") {
      cor$cor[cor$sample_id == i & cor$library == j] <- stats::cor(bc_df_2$rpm[bc_df_2$sample_id == i], bc_df_2$pMT09[bc_df_2$sample_id == i], use = "pairwise.complete.obs")
    }
  }
}

cor_2 <- cor %>%
  mutate(sample_id = gsub("(.*)_.*$", "\\1", sample_id))

bc_df <- merge(bc_df, cor_2, by = c("sample_id", "library"), all = T)

## 4: Correlation plots of the replicates
## Combine replicates of normalized data in 3 different columns
bc_df_rep <- bc_df[!is.na(bc_df$tf),] %>% 
  dplyr::select(replicate, rpm, barcode, gcf, condition, library, neg_ctrls) %>% 
  unique() %>%
  mutate(replicate = paste(library, replicate, sep = "_")) %>%
  spread(replicate, rpm)

colors <- c("#2D3047", "#1B998B")

bc_df_rep <- bc_df_rep[!is.na(bc_df_rep$library),]

for (i in unique(bc_df_rep$library)) {
p <- ggscatter(bc_df_rep[bc_df_rep$library == i,], x = paste(i, "r1", sep = "_"), y = paste(i, "r2", sep = "_"),
   add = "reg.line",
   color = "neg_ctrls",
   size = 1,
   add.params = list(color = "blue", fill = "lightgray"), title = paste("rep1 vs rep2 - library: ", i, sep = ""),
   conf.int = TRUE, ylab = "rep2", xlab = "rep1") + 
  stat_cor(method = "pearson", label.x = 4, label.y = 0) + 
  geom_abline(linetype = "dashed") +
  xlim(0,4000) + ylim(0,4000) +
  scale_color_manual(values = colors)+
  facet_wrap(~condition)
print(p)
}

for (i in unique(bc_df_rep$library)) {
p <- ggscatter(bc_df_rep[bc_df_rep$library == i,], x = paste(i, "r1", sep = "_"), y = paste(i, "r3", sep = "_"),
   add = "reg.line",
   color = "neg_ctrls",
   size = 1,
   add.params = list(color = "blue", fill = "lightgray"), title = paste("rep1 vs rep3 - library: ", i, sep = ""),
   conf.int = TRUE, ylab = "rep3", xlab = "rep1") + 
  stat_cor(method = "pearson", label.x = 4, label.y = 0) + 
  geom_abline(linetype = "dashed") +
  xlim(0,4000) + ylim(0,4000) +
  scale_color_manual(values = colors)+
  facet_wrap(~condition)
print(p)
}

for (i in unique(bc_df_rep$library)) {
p <- ggscatter(bc_df_rep[bc_df_rep$library == i,], x = paste(i, "r2", sep = "_"), y = paste(i, "r3", sep = "_"),
   add = "reg.line",
   color = "neg_ctrls",
   size = 1,
   add.params = list(color = "blue", fill = "lightgray"), title = paste("rep2 vs rep3 - library: ", i, sep = ""),
   conf.int = TRUE, ylab = "rep3", xlab = "rep2") + 
  stat_cor(method = "pearson", label.x = 4, label.y = 0) + 
  geom_abline(linetype = "dashed") +
  xlim(0,4000) + ylim(0,4000) +
  scale_color_manual(values = colors)+
  facet_wrap(~condition)
print(p)
}


Sample filtering

# Remove samples with low dynamic range (this most likely is due to unhappy cells, pDNA contamination or some other mistake in the sample prep)
for (i in unique(bc_df$sample_id)) {
  bc_df$n_bc[bc_df$sample_id == i] <- length(bc_df$barcode[bc_df$rpm > 500 & bc_df$sample_id == i])
}
bc_df <- bc_df %>%
  filter(n_bc > 75 | str_detect(sample_id, "pMT")) %>% 
  dplyr::select(-n_bc)

# Remove samples with high pDNA contamination (most likely those samples were already removed in the previous step as this is a bit redundant)
bc_df <- bc_df %>%
  filter(cor <= 0.5 | str_detect(sample_id, "pMT")) %>% 
           dplyr::select(-cor)

# Manually remove weird K562 sample
bc_df <- bc_df %>%
  filter(sample_id != "K562_DMSO_r3_gcf6502")

# Remove all non-matching reads
bc_df <- bc_df[!is.na(bc_df$tf),]

Normalization of barcode counts:

Divide cDNA barcode counts through pDNA barcode counts to get activity

# Prepare pDNA data and remove all barcodes with less than 20 counts 
pMT02 <- bc_df %>%
  filter(str_detect(sample_id, "pMT02"), library == "1") %>%
  filter(starcode_counts > 20) %>%
  dplyr::select(barcode, sample_id, rpm) %>%
  spread(sample_id, rpm) %>%
  mutate(pMT02 = dplyr::select(., -matches("barcode")) %>% rowMeans(., na.rm = T)) %>%
  dplyr::select(barcode, pMT02)

pMT09 <- bc_df %>%
  filter(str_detect(sample_id, "pMT09"), library == "2") %>%
  filter(starcode_counts > 20) %>%
  dplyr::select(barcode, sample_id, rpm) %>%
  spread(sample_id, rpm) %>%
  mutate(pMT09 = dplyr::select(., -matches("barcode")) %>% rowMeans(., na.rm = T)) %>%
  dplyr::select(barcode, pMT09)

pMT09_02 <- bc_df %>%
  filter(str_detect(sample_id, "pMT09_02"), library == "1+2") %>%
   filter(starcode_counts > 20) %>%
  dplyr::select(barcode, sample_id, rpm) %>%
  spread(sample_id, rpm) %>%
  mutate(pMT09_02 = dplyr::select(., -matches("barcode")) %>% rowMeans(., na.rm = T)) %>%
  dplyr::select(barcode, pMT09_02)

pDNA <- merge(pMT02, pMT09, all = T)
pDNA <- merge(pDNA, pMT09_02, all = T)

# Add pDNA data as separate column - for both library 1 and library 2
bc_df <- merge(bc_df, pDNA, by = "barcode")

# Compute activity by dividing cDNA bc counts through pDNA bc counts
bc_df$activity[bc_df$library == "1"] <- bc_df$rpm[bc_df$library == "1"] / bc_df$pMT02[bc_df$library == "1"]
bc_df$activity[bc_df$library == "1+2"] <- bc_df$rpm[bc_df$library == "1+2"] / bc_df$pMT09_02[bc_df$library == "1+2"]
bc_df$activity[bc_df$library == "2"] <- bc_df$rpm[bc_df$library == "2"] / bc_df$pMT09[bc_df$library == "2"]

# Remove rows that could not be computed due to too little pDNA counts
bc_df <- bc_df %>%
  drop_na(activity)

Calculate mean activity - filter out outlier barcodes

# First identify and remove outlier barcodes - this removes the noise created by faulty barcode clustering etc. 
## Calculate mean and SD for each reporter
bc_df_cDNA <- bc_df %>%
  filter(str_detect(sample_id, "pMT", negate = T), str_detect(sample_id, "pDNA", negate = T))
bc_df_cDNA$reporter_id <- paste(bc_df_cDNA$tf, bc_df_cDNA$spacing, 
                                bc_df_cDNA$distance, bc_df_cDNA$promoter,
                                bc_df_cDNA$background, sep = "_")
bc_df_cDNA$mean_activity <- ave(bc_df_cDNA$activity, bc_df_cDNA$reporter_id, 
                                bc_df_cDNA$sample_id, FUN =
                                  function(x) mean(x))
bc_df_cDNA$sd_activity <- ave(bc_df_cDNA$activity, bc_df_cDNA$reporter_id, 
                              bc_df_cDNA$sample_id,  FUN =
                                  function(x) sd(x))

## Remove data points that are 2xSD away from the mean
bc_df_cDNA$upper_activity <- bc_df_cDNA$mean_activity + (2 * bc_df_cDNA$sd_activity)
bc_df_cDNA$lower_activity <- bc_df_cDNA$mean_activity - (2 * bc_df_cDNA$sd_activity)

bc_df_cDNA$low_outlier <- bc_df_cDNA$activity - bc_df_cDNA$lower_activity
bc_df_cDNA$high_outlier <- bc_df_cDNA$upper_activity - bc_df_cDNA$activity

## Plot effect of highest outlier bc -> SNP in minP promoter
outlier <- bc_df_cDNA[bc_df_cDNA$reporter_id == "ZFP42_5bp_21bp_minP_3",] %>% 
  dplyr::select(barcode_number, activity, sample) %>%
  unique()

ggplot_custom(outlier, aes(x = barcode_number, y = activity)) +
  geom_quasirandom() +
  xlab("barcode #") + 
  labs(title = "Zfp42 reporter - TATA-box minP mutated", 
       subtitle = "bc8 AGAGGGTATATAAT -> AGAGGGGATATAAT")

## Plot effect of highest outlier bc -> Elk1 outlier
outlier <- bc_df_cDNA[bc_df_cDNA$reporter_id == "ELK1_5bp_21bp_mCMV_2",] %>% 
  dplyr::select(barcode_number, activity) %>%
  unique()

ggplot_custom(outlier, aes(x = barcode_number, y = activity)) +
  geom_quasirandom()+
  xlab("barcode #") + 
  labs(title = "Elk1 reporter - bc1 attached to Pax6 reporter")

## Plot effect of highest outlier bc -> Elk1 outlier
outlier <- bc_df_cDNA[bc_df_cDNA$reporter_id == "TCF3_5bp_10bp_hBGm_3",] %>% 
  dplyr::select(barcode_number, activity) %>%
  unique()

ggplot_custom(outlier, aes(x = barcode_number, y = activity)) +
  geom_quasirandom() +
  xlab("barcode #") + 
  labs(title = "Tcf3 reporter - bc1 attached to multiple (less active) reporters")

## Choose arbitrary cutoff to get rid of most extreme outliers
bc_df_cDNA_filt <- bc_df_cDNA[bc_df_cDNA$low_outlier > -0.3 & bc_df_cDNA$high_outlier > -2 & bc_df_cDNA$sd_activity < 100,]

## Recalculate mean and sd
bc_df_cDNA_filt$mean_activity <- ave(bc_df_cDNA_filt$activity, bc_df_cDNA_filt$reporter_id, 
                                bc_df_cDNA_filt$sample_id, FUN =
                                  function(x) mean(x))
bc_df_cDNA_filt$sd_activity <- ave(bc_df_cDNA_filt$activity, bc_df_cDNA_filt$reporter_id, 
                              bc_df_cDNA_filt$sample_id,  FUN =
                                  function(x) sd(x))

Scaling data

## Compute activity relative to minimal promoter background
bc_df_cDNA_filt_neg <- bc_df_cDNA_filt %>%
  dplyr::select(sample_id, activity, reporter_id, tf, promoter) %>%
  filter(str_detect(tf, "RANDOM")) %>%
  unique() %>%
  mutate(activity = ave(activity, promoter, sample_id, FUN = function(x) mean(x))) %>%
  dplyr::select(-reporter_id) %>%
  unique() %>%
  dplyr::select("tf_activity2" = activity, promoter, sample_id) %>%
  unique()


### For library 2 I don't have random motifs, so I will take the mean of the mutated motifs instead (get rid of the 2% highest active mutated controls)
bc_df_cDNA_filt_neg2 <- bc_df_cDNA_filt %>%
  dplyr::select(sample_id, reporter_id, tf, promoter, neg_ctrls, mean_activity) %>%
  filter(neg_ctrls == "Yes") %>%
  unique() %>%
  group_by(sample_id, promoter) %>%
  dplyr::top_frac(-0.75, mean_activity) %>%
  mutate(activity = ave(mean_activity, promoter, sample_id, FUN = function(x) mean(x))) %>%
  dplyr::select(-reporter_id) %>%
  unique() %>%
  dplyr::select("tf_activity" = activity, promoter, sample_id) %>%
  unique()

x <- merge(bc_df_cDNA_filt_neg, bc_df_cDNA_filt_neg2)
plot(x$tf_activity, x$tf_activity2)

### Normalization by random has some outliers (gcf6502) -> I can better for now normalize by mutated motifs since I also have data for all samples from that


bc_df_cDNA_filt <- merge(bc_df_cDNA_filt, bc_df_cDNA_filt_neg2, by = c("sample_id", "promoter"))
bc_df_cDNA_filt <- bc_df_cDNA_filt %>%
  mutate(minP_activity = activity / tf_activity)


### Compute a p-value for each reporter with respect to the background minimal promoter activity
bc_df_cDNA_filt$library[is.na(bc_df_cDNA_filt$library)] <- "1+2"
bc_df_cDNA_filt_neg2 <- bc_df_cDNA_filt %>%
  dplyr::select(sample_id, reporter_id, tf, promoter, neg_ctrls, mean_activity, condition, library) %>%
  filter(neg_ctrls == "Yes") %>%
  unique() %>%
  group_by(sample_id, promoter) %>%
  dplyr::top_frac(-0.75, mean_activity) %>%
  mutate(id = paste(condition, promoter, library, sep = "_"))

bc_df_cDNA_filt <- bc_df_cDNA_filt %>%
  mutate(reporter_id2 = gsub("(.*)_.*(_[1-3]{1}$)", "\\1\\2", reporter_id),
         id = paste(condition, promoter, library, sep = "_"))


pval_list <- list()
for (i in unique(bc_df_cDNA_filt$reporter_id2)) {
  print(i)
  test_x <- bc_df_cDNA_filt[bc_df_cDNA_filt$reporter_id2 == i,]
  ids <- unique(bc_df_cDNA_filt$id[bc_df_cDNA_filt$reporter_id2 == i])
  pval_list[[i]] <- lapply(ids, function(x) t.test(test_x$activity[test_x$id == x], 
                                                   bc_df_cDNA_filt_neg2$mean_activity[bc_df_cDNA_filt_neg2$id == x])$p.value)
  names(pval_list[[i]]) <- ids
}
## [1] "NFE2L2_10bp_21bp_1"
## [1] "ZFP42_neg_10bp_21bp_1"
## [1] "NFE2L2_neg_10bp_21bp_1"
## [1] "SP1_10bp_21bp_1"
## [1] "ZFX_10bp_21bp_1"
## [1] "TP53_10bp_21bp_1"
## [1] "STAT3_10bp_21bp_1"
## [1] "SP1_neg_10bp_21bp_1"
## [1] "SMAD4_10bp_21bp_1"
## [1] "RBPJ_10bp_21bp_1"
## [1] "ELK1_10bp_21bp_1"
## [1] "PAX6_10bp_21bp_1"
## [1] "PAX6_neg_10bp_21bp_1"
## [1] "TFCP2L1_neg_10bp_21bp_1"
## [1] "GLI1_10bp_21bp_1"
## [1] "ELK1_neg_10bp_21bp_1"
## [1] "ESRRB_10bp_21bp_1"
## [1] "RANDOM3_10bp_21bp_1"
## [1] "OTX1_neg_10bp_21bp_1"
## [1] "GBX2_neg_10bp_21bp_1"
## [1] "IRF3_10bp_21bp_1"
## [1] "TFCP2L1_10bp_21bp_1"
## [1] "NFKB1_10bp_21bp_1"
## [1] "CREB1_neg_10bp_21bp_1"
## [1] "KLF4_10bp_21bp_1"
## [1] "RANDOM1_10bp_21bp_1"
## [1] "ESRRB_neg_10bp_21bp_1"
## [1] "KLF4_neg_10bp_21bp_1"
## [1] "IRX3_neg_10bp_21bp_1"
## [1] "ZFX_neg_10bp_21bp_1"
## [1] "STAT3_neg_10bp_21bp_1"
## [1] "CREB1_10bp_21bp_1"
## [1] "GLI1_neg_10bp_21bp_1"
## [1] "NFYA_10bp_21bp_1"
## [1] "NFYA_neg_10bp_21bp_1"
## [1] "OTX1_10bp_21bp_1"
## [1] "IRF3_neg_10bp_21bp_1"
## [1] "TCF3_neg_10bp_21bp_1"
## [1] "RANDOM2_10bp_21bp_1"
## [1] "ZFP42_10bp_21bp_1"
## [1] "RARA_neg_10bp_21bp_1"
## [1] "TP53_neg_10bp_21bp_1"
## [1] "IRX3_10bp_21bp_1"
## [1] "SMAD4_neg_10bp_21bp_1"
## [1] "TCF3_10bp_21bp_1"
## [1] "NFKB1_neg_10bp_21bp_1"
## [1] "TFCP2L1_neg_5bp_21bp_1"
## [1] "ZFX_10bp_10bp_1"
## [1] "KLF4_neg_5bp_10bp_3"
## [1] "NFKB1_neg_5bp_21bp_3"
## [1] "ELK1_5bp_10bp_1"
## [1] "OTX1_5bp_21bp_3"
## [1] "NFKB1_5bp_21bp_1"
## [1] "CREB1_10bp_10bp_3"
## [1] "NFE2L2_5bp_10bp_2"
## [1] "ZFP42_neg_10bp_10bp_1"
## [1] "NFKB1_5bp_21bp_2"
## [1] "ZFP42_5bp_21bp_2"
## [1] "NFE2L2_10bp_10bp_2"
## [1] "CREB1_neg_5bp_21bp_1"
## [1] "ZFX_5bp_21bp_2"
## [1] "ZFP42_neg_5bp_21bp_1"
## [1] "RARA_5bp_21bp_3"
## [1] "ELK1_neg_5bp_10bp_2"
## [1] "TFCP2L1_5bp_21bp_1"
## [1] "ZFX_10bp_21bp_2"
## [1] "STAT3_neg_10bp_10bp_2"
## [1] "ZFP42_neg_10bp_21bp_3"
## [1] "TP53_10bp_21bp_2"
## [1] "SP1_10bp_21bp_2"
## [1] "OTX1_10bp_21bp_2"
## [1] "CREB1_10bp_21bp_3"
## [1] "ESRRB_neg_5bp_10bp_1"
## [1] "KLF4_neg_10bp_21bp_3"
## [1] "NFE2L2_10bp_21bp_2"
## [1] "ZFX_neg_10bp_10bp_2"
## [1] "ZFP42_neg_5bp_10bp_3"
## [1] "CREB1_5bp_10bp_2"
## [1] "RBPJ_neg_5bp_10bp_3"
## [1] "ZFP42_10bp_10bp_1"
## [1] "NEUROG2_10bp_21bp_3"
## [1] "RBPJ_10bp_21bp_3"
## [1] "SMAD4_neg_5bp_10bp_1"
## [1] "NFYA_neg_10bp_21bp_3"
## [1] "NFYA_neg_10bp_10bp_2"
## [1] "NR3C1_5bp_10bp_3"
## [1] "NFYA_10bp_21bp_2"
## [1] "TFCP2L1_neg_10bp_21bp_2"
## [1] "SMAD4_neg_10bp_21bp_2"
## [1] "SMAD4_5bp_21bp_3"
## [1] "TCF3_neg_10bp_21bp_3"
## [1] "NFE2L2_10bp_21bp_3"
## [1] "KLF4_neg_10bp_21bp_2"
## [1] "RARA_neg_5bp_10bp_3"
## [1] "STAT3_5bp_10bp_1"
## [1] "GLI1_neg_5bp_21bp_1"
## [1] "KLF4_5bp_21bp_2"
## [1] "ESRRB_10bp_10bp_2"
## [1] "IRX3_neg_10bp_10bp_2"
## [1] "PAX6_5bp_10bp_2"
## [1] "NFE2L2_10bp_10bp_3"
## [1] "SMAD4_neg_5bp_21bp_3"
## [1] "KLF4_10bp_21bp_3"
## [1] "RANDOM3_5bp_10bp_3"
## [1] "RANDOM2_5bp_10bp_3"
## [1] "CREB1_5bp_10bp_3"
## [1] "GBX2_neg_5bp_21bp_1"
## [1] "NEUROG2_10bp_10bp_2"
## [1] "TCF3_neg_5bp_10bp_3"
## [1] "IRX3_neg_5bp_10bp_3"
## [1] "NFE2L2_neg_5bp_10bp_2"
## [1] "NFKB1_10bp_10bp_3"
## [1] "OTX1_neg_5bp_21bp_1"
## [1] "TP53_10bp_10bp_3"
## [1] "KLF4_neg_5bp_10bp_1"
## [1] "ESRRB_neg_10bp_10bp_1"
## [1] "TFCP2L1_neg_5bp_10bp_2"
## [1] "STAT3_10bp_21bp_3"
## [1] "RBPJ_10bp_10bp_2"
## [1] "RANDOM1_5bp_21bp_1"
## [1] "SMAD4_10bp_10bp_3"
## [1] "CREB1_5bp_10bp_1"
## [1] "ZFP42_neg_10bp_10bp_2"
## [1] "PAX6_neg_10bp_10bp_3"
## [1] "TFCP2L1_neg_5bp_21bp_3"
## [1] "TCF3_neg_10bp_21bp_2"
## [1] "GLI1_neg_10bp_10bp_1"
## [1] "OTX1_10bp_10bp_3"
## [1] "RBPJ_neg_5bp_10bp_2"
## [1] "HOMEZ_5bp_21bp_3"
## [1] "TFCP2L1_10bp_10bp_2"
## [1] "NFE2L2_neg_10bp_21bp_3"
## [1] "ZFX_neg_10bp_10bp_3"
## [1] "TFCP2L1_5bp_10bp_3"
## [1] "NR3C1_5bp_10bp_2"
## [1] "ESRRB_10bp_10bp_3"
## [1] "IRF3_neg_5bp_10bp_1"
## [1] "PAX6_5bp_21bp_1"
## [1] "TFCP2L1_neg_5bp_10bp_3"
## [1] "RANDOM1_10bp_21bp_3"
## [1] "NFKB1_5bp_10bp_1"
## [1] "NFYA_neg_5bp_21bp_3"
## [1] "HOMEZ_10bp_10bp_1"
## [1] "STAT3_10bp_10bp_2"
## [1] "TP53_5bp_21bp_2"
## [1] "OTX1_10bp_10bp_2"
## [1] "SMAD4_10bp_10bp_2"
## [1] "PAX6_5bp_21bp_2"
## [1] "GBX2_neg_5bp_21bp_3"
## [1] "OTX1_neg_5bp_10bp_3"
## [1] "RANDOM1_5bp_10bp_2"
## [1] "IRF3_neg_5bp_10bp_3"
## [1] "IRF3_10bp_10bp_3"
## [1] "GLI1_neg_10bp_10bp_2"
## [1] "KLF4_neg_10bp_10bp_3"
## [1] "RARA_10bp_21bp_3"
## [1] "NFE2L2_5bp_21bp_1"
## [1] "RANDOM3_10bp_10bp_2"
## [1] "CREB1_10bp_21bp_2"
## [1] "STAT3_neg_10bp_21bp_2"
## [1] "TFCP2L1_10bp_21bp_2"
## [1] "RBPJ_neg_10bp_21bp_3"
## [1] "NFE2L2_neg_5bp_21bp_1"
## [1] "RANDOM1_5bp_10bp_1"
## [1] "TP53_5bp_10bp_3"
## [1] "CREB1_neg_10bp_21bp_3"
## [1] "RBPJ_5bp_10bp_3"
## [1] "NEUROG2_neg_10bp_10bp_2"
## [1] "TCF3_5bp_10bp_3"
## [1] "GLI1_neg_5bp_10bp_2"
## [1] "ZFP42_5bp_21bp_3"
## [1] "IRF3_neg_10bp_21bp_3"
## [1] "STAT3_5bp_21bp_3"
## [1] "CREB1_neg_5bp_10bp_3"
## [1] "NFE2L2_5bp_21bp_3"
## [1] "STAT3_neg_10bp_10bp_3"
## [1] "ELK1_10bp_10bp_1"
## [1] "NFE2L2_neg_10bp_10bp_1"
## [1] "GBX2_5bp_21bp_3"
## [1] "CREB1_5bp_21bp_2"
## [1] "ZFP42_5bp_10bp_2"
## [1] "ESRRB_5bp_21bp_1"
## [1] "ZFP42_10bp_10bp_2"
## [1] "ELK1_5bp_21bp_2"
## [1] "NFKB1_neg_5bp_21bp_1"
## [1] "TCF3_neg_10bp_10bp_1"
## [1] "RANDOM3_5bp_10bp_2"
## [1] "PAX6_neg_5bp_10bp_3"
## [1] "ELK1_5bp_10bp_2"
## [1] "KLF4_5bp_10bp_3"
## [1] "HOMEZ_5bp_10bp_2"
## [1] "OTX1_neg_5bp_10bp_2"
## [1] "KLF4_neg_5bp_21bp_2"
## [1] "NR3C1_10bp_10bp_3"
## [1] "NFKB1_neg_5bp_10bp_2"
## [1] "RANDOM1_5bp_10bp_3"
## [1] "KLF4_5bp_21bp_1"
## [1] "STAT3_10bp_21bp_2"
## [1] "RANDOM2_5bp_21bp_3"
## [1] "TP53_5bp_21bp_3"
## [1] "NFYA_neg_10bp_10bp_3"
## [1] "ESRRB_neg_5bp_10bp_2"
## [1] "ESRRB_neg_5bp_10bp_3"
## [1] "NR3C1_neg_5bp_21bp_2"
## [1] "ZFX_5bp_10bp_2"
## [1] "GBX2_neg_10bp_21bp_3"
## [1] "GLI1_5bp_21bp_3"
## [1] "NFKB1_5bp_21bp_3"
## [1] "STAT3_5bp_10bp_2"
## [1] "RANDOM3_5bp_10bp_1"
## [1] "KLF4_5bp_10bp_1"
## [1] "GBX2_neg_5bp_10bp_1"
## [1] "ELK1_5bp_21bp_3"
## [1] "GLI1_10bp_21bp_3"
## [1] "STAT3_10bp_10bp_3"
## [1] "NEUROG2_5bp_10bp_2"
## [1] "GBX2_5bp_21bp_2"
## [1] "NFKB1_neg_10bp_10bp_1"
## [1] "PAX6_neg_5bp_21bp_1"
## [1] "NFKB1_5bp_10bp_3"
## [1] "RARA_5bp_10bp_3"
## [1] "SP1_neg_5bp_10bp_2"
## [1] "KLF4_neg_10bp_10bp_2"
## [1] "RBPJ_5bp_10bp_2"
## [1] "STAT3_5bp_10bp_3"
## [1] "SP1_5bp_10bp_2"
## [1] "ZFX_5bp_21bp_3"
## [1] "NFE2L2_neg_5bp_21bp_3"
## [1] "ESRRB_neg_5bp_21bp_2"
## [1] "RARA_5bp_10bp_2"
## [1] "SP1_neg_10bp_10bp_3"
## [1] "NFYA_5bp_21bp_3"
## [1] "NEUROG2_5bp_21bp_2"
## [1] "TCF3_neg_5bp_21bp_3"
## [1] "NEUROG2_10bp_21bp_1"
## [1] "GLI1_neg_5bp_21bp_2"
## [1] "GBX2_10bp_21bp_1"
## [1] "TCF3_neg_5bp_21bp_1"
## [1] "GBX2_neg_5bp_21bp_2"
## [1] "SP1_5bp_10bp_3"
## [1] "RANDOM1_10bp_10bp_1"
## [1] "OTX1_10bp_21bp_3"
## [1] "RANDOM2_10bp_21bp_2"
## [1] "IRF3_5bp_21bp_1"
## [1] "NFYA_10bp_10bp_1"
## [1] "ZFX_10bp_10bp_2"
## [1] "IRF3_10bp_21bp_3"
## [1] "NFYA_5bp_21bp_1"
## [1] "ELK1_neg_5bp_21bp_3"
## [1] "ELK1_neg_5bp_21bp_2"
## [1] "RARA_neg_5bp_10bp_2"
## [1] "GBX2_10bp_10bp_3"
## [1] "NR3C1_10bp_10bp_2"
## [1] "NFE2L2_neg_10bp_10bp_3"
## [1] "NFYA_10bp_21bp_3"
## [1] "GBX2_5bp_10bp_1"
## [1] "ESRRB_5bp_10bp_1"
## [1] "NFYA_neg_5bp_10bp_3"
## [1] "IRX3_10bp_10bp_2"
## [1] "NFE2L2_neg_5bp_10bp_1"
## [1] "IRX3_neg_10bp_10bp_3"
## [1] "IRF3_5bp_10bp_1"
## [1] "GLI1_10bp_10bp_3"
## [1] "ESRRB_5bp_21bp_3"
## [1] "NFE2L2_neg_10bp_21bp_2"
## [1] "CREB1_5bp_21bp_1"
## [1] "GLI1_neg_10bp_10bp_3"
## [1] "RANDOM2_10bp_10bp_1"
## [1] "KLF4_neg_5bp_21bp_1"
## [1] "ZFP42_10bp_10bp_3"
## [1] "SMAD4_5bp_10bp_3"
## [1] "ZFP42_5bp_10bp_1"
## [1] "GBX2_10bp_10bp_2"
## [1] "TP53_neg_10bp_10bp_3"
## [1] "ELK1_10bp_10bp_2"
## [1] "GLI1_10bp_10bp_2"
## [1] "RANDOM3_5bp_21bp_3"
## [1] "TP53_10bp_10bp_1"
## [1] "RANDOM3_10bp_21bp_3"
## [1] "ZFX_5bp_21bp_1"
## [1] "RBPJ_10bp_21bp_2"
## [1] "RARA_neg_5bp_21bp_1"
## [1] "ZFP42_neg_5bp_21bp_3"
## [1] "ZFP42_neg_5bp_10bp_2"
## [1] "STAT3_10bp_10bp_1"
## [1] "NR3C1_neg_10bp_21bp_1"
## [1] "IRX3_10bp_10bp_3"
## [1] "RANDOM1_10bp_10bp_2"
## [1] "ZFX_neg_5bp_10bp_3"
## [1] "PAX6_neg_5bp_10bp_2"
## [1] "OTX1_neg_10bp_21bp_2"
## [1] "IRF3_10bp_21bp_2"
## [1] "PAX6_neg_5bp_21bp_2"
## [1] "TCF3_10bp_10bp_3"
## [1] "SP1_neg_5bp_10bp_3"
## [1] "NFKB1_neg_10bp_21bp_2"
## [1] "TP53_neg_5bp_10bp_1"
## [1] "TP53_5bp_10bp_2"
## [1] "IRX3_neg_10bp_10bp_1"
## [1] "ELK1_10bp_10bp_3"
## [1] "PAX6_10bp_10bp_3"
## [1] "KLF4_neg_5bp_10bp_2"
## [1] "GLI1_5bp_10bp_2"
## [1] "NFKB1_neg_5bp_10bp_1"
## [1] "ZFX_10bp_21bp_3"
## [1] "TCF3_5bp_21bp_1"
## [1] "TFCP2L1_10bp_21bp_3"
## [1] "KLF4_10bp_10bp_3"
## [1] "OTX1_neg_10bp_10bp_2"
## [1] "ELK1_neg_5bp_21bp_1"
## [1] "OTX1_10bp_10bp_1"
## [1] "NFYA_neg_5bp_21bp_2"
## [1] "ZFX_neg_10bp_10bp_1"
## [1] "TFCP2L1_neg_10bp_10bp_2"
## [1] "TFCP2L1_neg_5bp_21bp_2"
## [1] "GBX2_neg_10bp_21bp_2"
## [1] "OTX1_neg_10bp_10bp_1"
## [1] "ZFX_neg_5bp_21bp_3"
## [1] "GBX2_neg_5bp_10bp_2"
## [1] "STAT3_neg_5bp_10bp_2"
## [1] "TFCP2L1_neg_5bp_10bp_1"
## [1] "KLF4_5bp_10bp_2"
## [1] "SP1_neg_5bp_21bp_2"
## [1] "NR3C1_neg_5bp_21bp_1"
## [1] "CREB1_neg_5bp_10bp_2"
## [1] "GBX2_neg_5bp_10bp_3"
## [1] "OTX1_neg_5bp_10bp_1"
## [1] "ESRRB_5bp_10bp_2"
## [1] "NEUROG2_neg_5bp_21bp_1"
## [1] "RARA_5bp_10bp_1"
## [1] "TFCP2L1_10bp_10bp_1"
## [1] "SMAD4_neg_10bp_10bp_3"
## [1] "CREB1_5bp_21bp_3"
## [1] "RARA_neg_10bp_21bp_3"
## [1] "STAT3_neg_5bp_21bp_3"
## [1] "NFKB1_neg_5bp_10bp_3"
## [1] "RBPJ_neg_5bp_21bp_3"
## [1] "HOMEZ_neg_10bp_21bp_3"
## [1] "RBPJ_neg_10bp_10bp_2"
## [1] "SP1_neg_10bp_10bp_2"
## [1] "NFKB1_neg_10bp_10bp_2"
## [1] "ZFP42_neg_10bp_10bp_3"
## [1] "PAX6_10bp_21bp_3"
## [1] "TFCP2L1_5bp_10bp_2"
## [1] "NFYA_5bp_10bp_3"
## [1] "NR3C1_5bp_21bp_3"
## [1] "PAX6_neg_5bp_21bp_3"
## [1] "GBX2_neg_10bp_10bp_3"
## [1] "KLF4_neg_5bp_21bp_3"
## [1] "RANDOM3_5bp_21bp_2"
## [1] "KLF4_10bp_10bp_1"
## [1] "IRX3_10bp_10bp_1"
## [1] "STAT3_neg_10bp_21bp_3"
## [1] "TP53_neg_10bp_21bp_2"
## [1] "IRX3_neg_10bp_21bp_3"
## [1] "ZFP42_neg_5bp_21bp_2"
## [1] "ZFP42_10bp_21bp_3"
## [1] "OTX1_neg_5bp_21bp_2"
## [1] "IRF3_5bp_21bp_3"
## [1] "NR3C1_5bp_21bp_1"
## [1] "RANDOM2_5bp_10bp_1"
## [1] "GBX2_10bp_21bp_3"
## [1] "RBPJ_neg_10bp_21bp_2"
## [1] "CREB1_10bp_10bp_1"
## [1] "SP1_10bp_10bp_3"
## [1] "NFE2L2_5bp_21bp_2"
## [1] "NEUROG2_5bp_21bp_3"
## [1] "SP1_neg_5bp_21bp_1"
## [1] "RBPJ_5bp_10bp_1"
## [1] "NFYA_5bp_10bp_1"
## [1] "ELK1_5bp_21bp_1"
## [1] "SP1_10bp_10bp_1"
## [1] "SP1_5bp_21bp_3"
## [1] "TP53_5bp_10bp_1"
## [1] "TFCP2L1_5bp_21bp_2"
## [1] "RARA_10bp_10bp_2"
## [1] "PAX6_10bp_21bp_2"
## [1] "ZFX_neg_5bp_10bp_2"
## [1] "HOMEZ_5bp_10bp_3"
## [1] "RANDOM1_10bp_10bp_3"
## [1] "ESRRB_neg_10bp_21bp_3"
## [1] "RARA_neg_10bp_10bp_2"
## [1] "STAT3_neg_5bp_21bp_2"
## [1] "HOMEZ_neg_5bp_10bp_1"
## [1] "TP53_neg_5bp_21bp_1"
## [1] "RARA_neg_10bp_21bp_2"
## [1] "PAX6_5bp_10bp_3"
## [1] "RBPJ_neg_10bp_21bp_1"
## [1] "SMAD4_neg_5bp_21bp_2"
## [1] "ESRRB_neg_10bp_10bp_3"
## [1] "TP53_neg_10bp_10bp_1"
## [1] "PAX6_5bp_10bp_1"
## [1] "ELK1_neg_10bp_21bp_3"
## [1] "NFYA_5bp_10bp_2"
## [1] "NFKB1_10bp_21bp_3"
## [1] "TCF3_neg_10bp_10bp_3"
## [1] "IRF3_neg_5bp_21bp_1"
## [1] "GBX2_neg_10bp_10bp_2"
## [1] "SP1_5bp_21bp_2"
## [1] "TP53_neg_10bp_10bp_2"
## [1] "GLI1_5bp_21bp_2"
## [1] "NEUROG2_neg_10bp_10bp_3"
## [1] "CREB1_neg_10bp_10bp_2"
## [1] "GLI1_neg_5bp_10bp_1"
## [1] "KLF4_10bp_21bp_2"
## [1] "NEUROG2_neg_10bp_21bp_3"
## [1] "ELK1_neg_5bp_10bp_1"
## [1] "TFCP2L1_5bp_21bp_3"
## [1] "RBPJ_5bp_21bp_1"
## [1] "SP1_5bp_21bp_1"
## [1] "ELK1_10bp_21bp_2"
## [1] "IRX3_10bp_21bp_3"
## [1] "NFKB1_5bp_10bp_2"
## [1] "NFE2L2_10bp_10bp_1"
## [1] "TCF3_10bp_10bp_1"
## [1] "NEUROG2_5bp_10bp_1"
## [1] "RBPJ_neg_5bp_10bp_1"
## [1] "ELK1_5bp_10bp_3"
## [1] "ESRRB_10bp_21bp_2"
## [1] "OTX1_neg_10bp_21bp_3"
## [1] "STAT3_neg_5bp_10bp_1"
## [1] "GBX2_10bp_21bp_2"
## [1] "NEUROG2_neg_5bp_21bp_3"
## [1] "ELK1_neg_10bp_21bp_2"
## [1] "SMAD4_neg_5bp_10bp_2"
## [1] "SP1_neg_5bp_10bp_1"
## [1] "RBPJ_5bp_21bp_3"
## [1] "IRF3_10bp_10bp_2"
## [1] "SP1_neg_10bp_21bp_2"
## [1] "KLF4_neg_10bp_10bp_1"
## [1] "ESRRB_neg_5bp_21bp_1"
## [1] "ESRRB_10bp_21bp_3"
## [1] "KLF4_10bp_10bp_2"
## [1] "IRF3_10bp_10bp_1"
## [1] "SMAD4_neg_10bp_21bp_3"
## [1] "TCF3_neg_5bp_10bp_1"
## [1] "ELK1_neg_10bp_10bp_2"
## [1] "RANDOM2_10bp_21bp_3"
## [1] "ELK1_neg_5bp_10bp_3"
## [1] "CREB1_neg_5bp_10bp_1"
## [1] "SMAD4_5bp_21bp_1"
## [1] "TP53_neg_5bp_10bp_3"
## [1] "NFE2L2_5bp_10bp_1"
## [1] "IRF3_5bp_10bp_2"
## [1] "RARA_neg_10bp_10bp_3"
## [1] "SMAD4_neg_10bp_10bp_2"
## [1] "CREB1_neg_10bp_10bp_3"
## [1] "SP1_neg_5bp_21bp_3"
## [1] "SMAD4_neg_5bp_21bp_1"
## [1] "NEUROG2_neg_5bp_21bp_2"
## [1] "STAT3_neg_5bp_21bp_1"
## [1] "RBPJ_neg_10bp_10bp_3"
## [1] "ESRRB_neg_5bp_21bp_3"
## [1] "GLI1_10bp_21bp_2"
## [1] "PAX6_5bp_21bp_3"
## [1] "PAX6_neg_10bp_21bp_3"
## [1] "ZFP42_5bp_21bp_1"
## [1] "RANDOM3_10bp_10bp_3"
## [1] "IRX3_5bp_21bp_1"
## [1] "NFYA_neg_10bp_10bp_1"
## [1] "PAX6_neg_10bp_21bp_2"
## [1] "NFKB1_10bp_21bp_2"
## [1] "TFCP2L1_neg_10bp_21bp_3"
## [1] "PAX6_10bp_10bp_2"
## [1] "ZFX_5bp_10bp_1"
## [1] "RANDOM1_5bp_21bp_3"
## [1] "TCF3_neg_5bp_10bp_2"
## [1] "ESRRB_10bp_10bp_1"
## [1] "RBPJ_10bp_10bp_3"
## [1] "SP1_neg_10bp_21bp_3"
## [1] "ZFX_10bp_10bp_3"
## [1] "IRF3_neg_10bp_10bp_3"
## [1] "GBX2_5bp_10bp_3"
## [1] "HOMEZ_10bp_10bp_3"
## [1] "NFKB1_10bp_10bp_1"
## [1] "PAX6_10bp_10bp_1"
## [1] "STAT3_5bp_21bp_1"
## [1] "RANDOM3_10bp_21bp_2"
## [1] "TP53_5bp_21bp_1"
## [1] "RARA_neg_5bp_21bp_2"
## [1] "NFE2L2_neg_5bp_10bp_3"
## [1] "RBPJ_neg_5bp_21bp_2"
## [1] "IRX3_neg_10bp_21bp_2"
## [1] "STAT3_5bp_21bp_2"
## [1] "ZFP42_neg_10bp_21bp_2"
## [1] "GLI1_10bp_10bp_1"
## [1] "RARA_5bp_21bp_2"
## [1] "NR3C1_neg_5bp_10bp_3"
## [1] "RBPJ_5bp_21bp_2"
## [1] "NR3C1_5bp_10bp_1"
## [1] "NFYA_10bp_10bp_2"
## [1] "ESRRB_5bp_21bp_2"
## [1] "GLI1_5bp_10bp_1"
## [1] "NFKB1_neg_10bp_21bp_3"
## [1] "NEUROG2_10bp_10bp_1"
## [1] "TCF3_neg_10bp_10bp_2"
## [1] "RANDOM3_5bp_21bp_1"
## [1] "ZFP42_5bp_10bp_3"
## [1] "TP53_10bp_21bp_3"
## [1] "RANDOM1_10bp_21bp_2"
## [1] "NFKB1_neg_5bp_21bp_2"
## [1] "KLF4_5bp_21bp_3"
## [1] "RARA_neg_10bp_10bp_1"
## [1] "GLI1_5bp_21bp_1"
## [1] "NFYA_neg_10bp_21bp_2"
## [1] "GLI1_neg_10bp_21bp_2"
## [1] "RANDOM3_10bp_10bp_1"
## [1] "GLI1_neg_5bp_21bp_3"
## [1] "GBX2_5bp_10bp_2"
## [1] "NFE2L2_neg_5bp_21bp_2"
## [1] "NFKB1_10bp_10bp_2"
## [1] "SMAD4_10bp_21bp_2"
## [1] "OTX1_5bp_10bp_2"
## [1] "OTX1_5bp_21bp_2"
## [1] "IRX3_5bp_21bp_3"
## [1] "OTX1_5bp_10bp_1"
## [1] "NFE2L2_neg_10bp_10bp_2"
## [1] "IRX3_5bp_10bp_3"
## [1] "RANDOM1_5bp_21bp_2"
## [1] "TP53_10bp_10bp_2"
## [1] "RBPJ_neg_10bp_10bp_1"
## [1] "TFCP2L1_5bp_10bp_1"
## [1] "SP1_5bp_10bp_1"
## [1] "RARA_10bp_21bp_1"
## [1] "ZFP42_neg_5bp_10bp_1"
## [1] "ZFX_5bp_10bp_3"
## [1] "TCF3_10bp_10bp_2"
## [1] "HOMEZ_10bp_21bp_3"
## [1] "OTX1_5bp_10bp_3"
## [1] "TFCP2L1_10bp_10bp_3"
## [1] "TFCP2L1_neg_10bp_10bp_3"
## [1] "IRF3_neg_5bp_21bp_2"
## [1] "SP1_10bp_21bp_3"
## [1] "ESRRB_5bp_10bp_3"
## [1] "HOMEZ_10bp_21bp_1"
## [1] "TFCP2L1_neg_10bp_10bp_1"
## [1] "TP53_neg_10bp_21bp_3"
## [1] "TCF3_10bp_21bp_2"
## [1] "TCF3_10bp_21bp_3"
## [1] "CREB1_neg_5bp_21bp_3"
## [1] "STAT3_neg_10bp_10bp_1"
## [1] "IRF3_neg_5bp_10bp_2"
## [1] "IRF3_5bp_10bp_3"
## [1] "RARA_5bp_21bp_1"
## [1] "RARA_10bp_21bp_2"
## [1] "IRX3_5bp_10bp_1"
## [1] "NFYA_10bp_10bp_3"
## [1] "ESRRB_neg_10bp_21bp_2"
## [1] "RBPJ_10bp_10bp_1"
## [1] "CREB1_10bp_10bp_2"
## [1] "STAT3_neg_5bp_10bp_3"
## [1] "NFKB1_neg_10bp_10bp_3"
## [1] "HOMEZ_5bp_21bp_1"
## [1] "HOMEZ_10bp_10bp_2"
## [1] "TP53_neg_5bp_21bp_3"
## [1] "GLI1_neg_10bp_21bp_3"
## [1] "IRX3_neg_5bp_10bp_2"
## [1] "GLI1_neg_5bp_10bp_3"
## [1] "ESRRB_neg_10bp_10bp_2"
## [1] "IRX3_10bp_21bp_2"
## [1] "ZFX_neg_5bp_21bp_1"
## [1] "OTX1_neg_5bp_21bp_3"
## [1] "NFE2L2_5bp_10bp_3"
## [1] "ZFX_neg_5bp_10bp_1"
## [1] "SP1_10bp_10bp_2"
## [1] "ELK1_neg_10bp_10bp_1"
## [1] "HOMEZ_neg_10bp_21bp_1"
## [1] "NEUROG2_neg_5bp_10bp_1"
## [1] "RANDOM2_5bp_10bp_2"
## [1] "CREB1_neg_5bp_21bp_2"
## [1] "RARA_10bp_10bp_3"
## [1] "NR3C1_neg_5bp_10bp_1"
## [1] "HOMEZ_neg_10bp_10bp_2"
## [1] "RARA_10bp_10bp_1"
## [1] "ELK1_neg_10bp_10bp_3"
## [1] "NEUROG2_5bp_10bp_3"
## [1] "ELK1_10bp_21bp_3"
## [1] "HOMEZ_10bp_21bp_2"
## [1] "IRX3_5bp_10bp_2"
## [1] "NFYA_5bp_21bp_2"
## [1] "IRX3_neg_5bp_21bp_1"
## [1] "CREB1_neg_10bp_21bp_2"
## [1] "CREB1_neg_10bp_10bp_1"
## [1] "IRX3_neg_5bp_21bp_3"
## [1] "PAX6_neg_5bp_10bp_1"
## [1] "TCF3_5bp_10bp_1"
## [1] "HOMEZ_5bp_10bp_1"
## [1] "TCF3_neg_5bp_21bp_2"
## [1] "NR3C1_5bp_21bp_2"
## [1] "OTX1_neg_10bp_10bp_3"
## [1] "NR3C1_neg_10bp_21bp_3"
## [1] "NFYA_neg_5bp_21bp_1"
## [1] "SMAD4_10bp_21bp_3"
## [1] "GLI1_5bp_10bp_3"
## [1] "RANDOM2_5bp_21bp_1"
## [1] "HOMEZ_neg_5bp_21bp_1"
## [1] "TCF3_5bp_10bp_2"
## [1] "RANDOM2_10bp_10bp_3"
## [1] "SMAD4_10bp_10bp_1"
## [1] "SMAD4_5bp_10bp_1"
## [1] "ZFX_neg_10bp_21bp_3"
## [1] "NEUROG2_neg_10bp_21bp_1"
## [1] "PAX6_neg_10bp_10bp_2"
## [1] "RARA_neg_5bp_21bp_3"
## [1] "GBX2_5bp_21bp_1"
## [1] "NEUROG2_neg_5bp_10bp_3"
## [1] "ZFP42_10bp_21bp_2"
## [1] "RARA_neg_5bp_10bp_1"
## [1] "IRF3_neg_10bp_21bp_2"
## [1] "IRX3_5bp_21bp_2"
## [1] "IRF3_neg_10bp_10bp_2"
## [1] "TP53_neg_5bp_10bp_2"
## [1] "NR3C1_10bp_10bp_1"
## [1] "NFYA_neg_5bp_10bp_2"
## [1] "GBX2_10bp_10bp_1"
## [1] "NR3C1_10bp_21bp_1"
## [1] "RBPJ_neg_5bp_21bp_1"
## [1] "NR3C1_10bp_21bp_3"
## [1] "NFYA_neg_5bp_10bp_1"
## [1] "ZFX_neg_10bp_21bp_2"
## [1] "RANDOM2_10bp_10bp_2"
## [1] "NR3C1_neg_10bp_10bp_1"
## [1] "GBX2_neg_10bp_10bp_1"
## [1] "SP1_neg_10bp_10bp_1"
## [1] "HOMEZ_neg_5bp_10bp_2"
## [1] "SMAD4_neg_5bp_10bp_3"
## [1] "PAX6_neg_10bp_10bp_1"
## [1] "TCF3_5bp_21bp_3"
## [1] "HOMEZ_neg_10bp_10bp_1"
## [1] "IRF3_5bp_21bp_2"
## [1] "TCF3_5bp_21bp_2"
## [1] "NEUROG2_10bp_21bp_2"
## [1] "TP53_neg_5bp_21bp_2"
## [1] "OTX1_5bp_21bp_1"
## [1] "IRF3_neg_10bp_10bp_1"
## [1] "IRF3_neg_5bp_21bp_3"
## [1] "NEUROG2_neg_10bp_21bp_2"
## [1] "HOMEZ_neg_5bp_10bp_3"
## [1] "NR3C1_neg_5bp_21bp_3"
## [1] "NR3C1_neg_10bp_10bp_3"
## [1] "NR3C1_10bp_21bp_2"
## [1] "IRX3_neg_5bp_10bp_1"
## [1] "IRX3_neg_5bp_21bp_2"
## [1] "ZFX_neg_5bp_21bp_2"
## [1] "NEUROG2_5bp_21bp_1"
## [1] "HOMEZ_neg_5bp_21bp_2"
## [1] "SMAD4_neg_10bp_10bp_1"
## [1] "NR3C1_neg_10bp_10bp_2"
## [1] "HOMEZ_neg_5bp_21bp_3"
## [1] "RANDOM2_5bp_21bp_2"
## [1] "NEUROG2_neg_10bp_10bp_1"
## [1] "SMAD4_5bp_21bp_2"
## [1] "NR3C1_neg_10bp_21bp_2"
## [1] "SMAD4_5bp_10bp_2"
## [1] "NR3C1_neg_5bp_10bp_2"
## [1] "HOMEZ_neg_10bp_21bp_2"
## [1] "NEUROG2_10bp_10bp_3"
## [1] "HOMEZ_5bp_21bp_2"
## [1] "HOMEZ_neg_10bp_10bp_3"
## [1] "NEUROG2_neg_5bp_10bp_2"
## [1] "NRF1_neg_10bp_21bp_1"
## [1] "STAT1::STAT2_neg_10bp_21bp_1"
## [1] "WT1_neg_10bp_21bp_1"
## [1] "TFAP2A_10bp_21bp_1"
## [1] "ESR1_neg_10bp_21bp_1"
## [1] "POU5F1::SOX2_neg_10bp_21bp_1"
## [1] "NFATc1_neg_10bp_21bp_1"
## [1] "NFIA_10bp_21bp_1"
## [1] "HNF4A_neg_10bp_21bp_1"
## [1] "CEBPB_neg_10bp_21bp_1"
## [1] "STAT1::STAT2_10bp_21bp_1"
## [1] "POU5F1::SOX2_10bp_21bp_1"
## [1] "PGR_10bp_21bp_1"
## [1] "RUNX2_neg_10bp_21bp_1"
## [1] "NR1I3_10bp_21bp_1"
## [1] "ONECUT1_10bp_21bp_1"
## [1] "EGR1_10bp_21bp_1"
## [1] "HSF1_neg_10bp_21bp_1"
## [1] "EGR1_neg_10bp_21bp_1"
## [1] "NR1I3_neg_10bp_21bp_1"
## [1] "NR1I2_neg_10bp_21bp_1"
## [1] "NR5A2_10bp_21bp_1"
## [1] "PGR_neg_10bp_21bp_1"
## [1] "AHR::ARNT_neg_10bp_21bp_1"
## [1] "ONECUT1_neg_10bp_21bp_1"
## [1] "NR4A1_10bp_21bp_1"
## [1] "MEF2A_10bp_21bp_1"
## [1] "NR4A2::RXRA_10bp_21bp_1"
## [1] "FOXA1_neg_10bp_21bp_1"
## [1] "ESR1_10bp_21bp_1"
## [1] "HNF1A_neg_10bp_21bp_1"
## [1] "CEBPB_10bp_21bp_1"
## [1] "PPARA::RXRA_10bp_21bp_1"
## [1] "TEAD1_10bp_21bp_1"
## [1] "NR4A2::RXRA_neg_10bp_21bp_1"
## [1] "SRF_neg_10bp_21bp_1"
## [1] "MAF::NFE2_neg_10bp_21bp_1"
## [1] "NR1H4::RXRA_10bp_21bp_1"
## [1] "HNF1A_10bp_21bp_1"
## [1] "AR_neg_10bp_21bp_1"
## [1] "RORA_10bp_21bp_1"
## [1] "TCF7_10bp_21bp_1"
## [1] "NR5A2_neg_10bp_21bp_1"
## [1] "NR1I2_10bp_21bp_1"
## [1] "FOXA1_10bp_21bp_1"
## [1] "FOSL1_10bp_21bp_1"
## [1] "VDR::RXRA_10bp_21bp_1"
## [1] "TEAD1_neg_10bp_21bp_1"
## [1] "POU2F1_neg_10bp_21bp_1"
## [1] "SRF_10bp_21bp_1"
## [1] "FOXO1_neg_10bp_21bp_1"
## [1] "MAFA_neg_10bp_21bp_1"
## [1] "GRHL1_10bp_21bp_1"
## [1] "NRF1_10bp_21bp_1"
## [1] "AR_10bp_21bp_1"
## [1] "PPARA::RXRA_neg_10bp_21bp_1"
## [1] "MAF::NFE2_10bp_21bp_1"
## [1] "GATA1_neg_10bp_21bp_1"
## [1] "WT1_10bp_21bp_1"
## [1] "NR4A1_neg_10bp_21bp_1"
## [1] "NFATc1_10bp_21bp_1"
## [1] "REL_10bp_21bp_1"
## [1] "THRA_neg_10bp_21bp_1"
## [1] "NFIA_neg_10bp_21bp_1"
## [1] "POU5F1_neg_10bp_21bp_1"
## [1] "RXRA_neg_10bp_21bp_1"
## [1] "XBP1_neg_10bp_21bp_1"
## [1] "GATA4_10bp_21bp_1"
## [1] "FOSL1_neg_10bp_21bp_1"
## [1] "RUNX2_10bp_21bp_1"
## [1] "MYBL2_neg_10bp_21bp_1"
## [1] "RXRA_10bp_21bp_1"
## [1] "T_neg_10bp_21bp_1"
## [1] "FOS::JUN_10bp_21bp_1"
## [1] "MEF2A_neg_10bp_21bp_1"
## [1] "SOX9_10bp_21bp_1"
## [1] "FOS::JUN_neg_10bp_21bp_1"
## [1] "MYBL2_10bp_21bp_1"
## [1] "SOX9_neg_10bp_21bp_1"
## [1] "ETS1_10bp_21bp_1"
## [1] "SMAD2::SMAD3::SMAD4_10bp_21bp_1"
## [1] "ETS1_neg_10bp_21bp_1"
## [1] "NR1H2_10bp_21bp_1"
## [1] "REL_neg_10bp_21bp_1"
## [1] "TFAP2A_neg_10bp_21bp_1"
## [1] "THRA_10bp_21bp_1"
## [1] "AHR::ARNT_10bp_21bp_1"
## [1] "VDR::RXRA_neg_10bp_21bp_1"
## [1] "NR3C2_neg_10bp_21bp_1"
## [1] "XBP1_10bp_21bp_1"
## [1] "TCF7_neg_10bp_21bp_1"
## [1] "NR1D1_neg_10bp_21bp_1"
## [1] "E2F1_neg_10bp_21bp_1"
## [1] "MTF1_10bp_21bp_1"
## [1] "GATA1_10bp_21bp_1"
## [1] "NFAT5_10bp_21bp_1"
## [1] "SOX2_neg_10bp_21bp_1"
## [1] "RARA:RXRA_10bp_21bp_1"
## [1] "HNF4A_10bp_21bp_1"
## [1] "NR1H2_neg_10bp_21bp_1"
## [1] "POU2F1_10bp_21bp_1"
## [1] "NR1H4::RXRA_neg_10bp_21bp_1"
## [1] "THRB_10bp_21bp_1"
## [1] "PPARG::RXRA_neg_10bp_21bp_1"
## [1] "NR2E3_neg_10bp_21bp_1"
## [1] "PPARG::RXRA_10bp_21bp_1"
## [1] "NR3C2_10bp_21bp_1"
## [1] "SMAD2::SMAD3::SMAD4_neg_10bp_21bp_1"
## [1] "E2F1_10bp_21bp_1"
## [1] "NR4A1_neg_5bp_10bp_2"
## [1] "STAT1::STAT2_5bp_21bp_2"
## [1] "NR5A2_neg_10bp_21bp_2"
## [1] "XBP1_neg_10bp_10bp_2"
## [1] "POU5F1_10bp_10bp_2"
## [1] "NFATc1_neg_5bp_21bp_2"
## [1] "TFEB_TF-seq_NA_21bp_mCMV_NA"
## [1] "GATA3_TF-seq_NA_21bp_mCMV_NA"
## [1] "RARA:RXRA_neg_5bp_21bp_2"
## [1] "PPARA::RXRA_5bp_21bp_3"
## [1] "POU5F1::SOX2_10bp_10bp_1"
## [1] "NR1D1_neg_10bp_21bp_3"
## [1] "TFAP2A_neg_5bp_21bp_2"
## [1] "GATA1_neg_10bp_21bp_3"
## [1] "MEF2A_neg_10bp_10bp_3"
## [1] "MYBL2_5bp_10bp_2"
## [1] "NR4A2::RXRA_neg_5bp_10bp_3"
## [1] "PPARA::RXRA_neg_5bp_10bp_1"
## [1] "ESR1_neg_5bp_21bp_1"
## [1] "NFATc1_5bp_10bp_2"
## [1] "E2F1_10bp_10bp_1"
## [1] "NR1I3_5bp_21bp_1"
## [1] "RARA:RXRA_5bp_21bp_3"
## [1] "POU2F1_neg_5bp_21bp_1"
## [1] "RARA:RXRA_neg_10bp_21bp_1"
## [1] "NR1H4::RXRA_5bp_10bp_3"
## [1] "E2F1_neg_5bp_21bp_2"
## [1] "NR1I2_neg_10bp_21bp_3"
## [1] "NFAT5_promega_long_NA_10bp_mCMV_NA"
## [1] "XBP1_neg_10bp_21bp_3"
## [1] "FOSL1_5bp_10bp_2"
## [1] "SRF_neg_5bp_21bp_1"
## [1] "NR1H4::RXRA_neg_5bp_10bp_3"
## [1] "NR1D1_5bp_21bp_1"
## [1] "AR_5bp_21bp_1"
## [1] "TCF7_5bp_21bp_2"
## [1] "TFAP2A_neg_5bp_10bp_1"
## [1] "THRB_5bp_10bp_2"
## [1] "FOXO1_5bp_10bp_1"
## [1] "NR4A2::RXRA_neg_10bp_21bp_2"
## [1] "NR1D1_neg_10bp_10bp_2"
## [1] "SRE_promega_NA_10bp_mCMV_NA"
## [1] "HNF1A_neg_10bp_10bp_2"
## [1] "THRA_neg_5bp_21bp_2"
## [1] "STAT1::STAT2_10bp_21bp_3"
## [1] "IRF3_romanov_NA_21bp_mCMV_NA"
## [1] "FOXA1_neg_10bp_10bp_3"
## [1] "FOXO1_neg_5bp_10bp_2"
## [1] "ONECUT1_neg_5bp_10bp_3"
## [1] "GATA1_5bp_10bp_2"
## [1] "MYBL2_romanov_NA_21bp_mCMV_NA"
## [1] "POU5F1::SOX2_neg_5bp_10bp_1"
## [1] "NR1D1_neg_10bp_10bp_3"
## [1] "MYBL2_10bp_21bp_3"
## [1] "E2F1_neg_10bp_10bp_2"
## [1] "FOXA1_neg_5bp_21bp_3"
## [1] "NFIA_romanov_NA_21bp_mCMV_NA"
## [1] "RUNX2_neg_5bp_21bp_2"
## [1] "ONECUT1_neg_10bp_10bp_2"
## [1] "TEAD1_neg_10bp_10bp_3"
## [1] "SOX9_neg_10bp_10bp_2"
## [1] "GATA4_5bp_21bp_3"
## [1] "RXRA_neg_10bp_10bp_2"
## [1] "NFAT5_5bp_21bp_3"
## [1] "RXRA_neg_10bp_21bp_2"
## [1] "WT1_neg_5bp_21bp_3"
## [1] "TFAP2A_5bp_10bp_2"
## [1] "MAF::NFE2_10bp_10bp_2"
## [1] "MAF::NFE2_10bp_21bp_3"
## [1] "PPARA::RXRA_5bp_21bp_2"
## [1] "NR1I3_neg_5bp_21bp_2"
## [1] "GATA4_10bp_21bp_2"
## [1] "PPARG::RXRA_2_TF-seq_NA_10bp_mCMV_NA"
## [1] "VDR::RXRA_neg_10bp_21bp_2"
## [1] "VDR::RXRA_5bp_21bp_3"
## [1] "POU5F1::SOX2_neg_5bp_10bp_3"
## [1] "THRA_neg_10bp_21bp_2"
## [1] "RXRA_10bp_21bp_2"
## [1] "AHR::ARNT_5bp_21bp_3"
## [1] "VDR::RXRA_neg_5bp_10bp_3"
## [1] "RARA:RXRA_neg_5bp_10bp_1"
## [1] "THRB_neg_10bp_21bp_3"
## [1] "NR1H4::RXRA_5bp_10bp_1"
## [1] "POU5F1_neg_10bp_10bp_3"
## [1] "TFAP2A_neg_10bp_10bp_1"
## [1] "EGR1_5bp_10bp_2"
## [1] "NR4A2::RXRA_10bp_10bp_2"
## [1] "SOX9_neg_10bp_10bp_3"
## [1] "STAT1::STAT2_neg_5bp_10bp_3"
## [1] "MTF1_neg_5bp_10bp_2"
## [1] "FOXO1_5bp_10bp_3"
## [1] "ESR1_10bp_10bp_1"
## [1] "FOXA1_5bp_21bp_2"
## [1] "SRF_5bp_21bp_2"
## [1] "NR1I3_neg_5bp_21bp_3"
## [1] "HNF1A_neg_5bp_10bp_1"
## [1] "POU2F1_neg_5bp_10bp_1"
## [1] "HNF4A_neg_5bp_21bp_1"
## [1] "GRHL1_10bp_10bp_3"
## [1] "FOXA1_10bp_10bp_1"
## [1] "FOS::JUN_neg_10bp_10bp_3"
## [1] "POU2F1_neg_10bp_10bp_1"
## [1] "VDR::RXRA_10bp_10bp_2"
## [1] "NFAT5_5bp_10bp_1"
## [1] "FOS::JUN_10bp_21bp_3"
## [1] "GATA4_5bp_10bp_2"
## [1] "SOX2_romanov_NA_21bp_mCMV_NA"
## [1] "CEBPB_TF-seq_NA_21bp_mCMV_NA"
## [1] "STAT1::STAT2_neg_5bp_21bp_2"
## [1] "STAT1_promega_long_NA_10bp_mCMV_NA"
## [1] "XBP1_neg_5bp_10bp_2"
## [1] "NR1D1_neg_5bp_21bp_3"
## [1] "NR4A2::RXRA_5bp_21bp_3"
## [1] "PPARG::RXRA_neg_5bp_21bp_3"
## [1] "POU5F1::SOX2_10bp_10bp_2"
## [1] "NR1H4::RXRA_neg_5bp_21bp_3"
## [1] "STAT1_TF-seq_NA_21bp_mCMV_NA"
## [1] "CREB1_promega_NA_21bp_mCMV_NA"
## [1] "CREB1_promega_long_NA_10bp_mCMV_NA"
## [1] "NFATc1_5bp_21bp_3"
## [1] "NR4A1_10bp_21bp_3"
## [1] "GATA1_5bp_21bp_2"
## [1] "THRA_10bp_10bp_1"
## [1] "VDR::RXRA_TF-seq_NA_10bp_mCMV_NA"
## [1] "NR1I2_neg_5bp_21bp_2"
## [1] "AHR::ARNT_neg_5bp_21bp_3"
## [1] "EGR1_10bp_10bp_1"
## [1] "PGR_10bp_21bp_3"
## [1] "NFAT5_5bp_10bp_3"
## [1] "NR1H4::RXRA_neg_10bp_10bp_1"
## [1] "STAT3_promega_long_NA_10bp_mCMV_NA"
## [1] "FOSL1_neg_5bp_10bp_3"
## [1] "AHR::ARNT_neg_10bp_10bp_3"
## [1] "WT1_5bp_10bp_1"
## [1] "ETS1_neg_10bp_10bp_1"
## [1] "POU5F1_10bp_21bp_1"
## [1] "MYBL2_10bp_10bp_1"
## [1] "SRF_promega_NA_10bp_mCMV_NA"
## [1] "ESR1_10bp_21bp_2"
## [1] "NRF1_5bp_10bp_3"
## [1] "RORA_neg_5bp_21bp_2"
## [1] "NFIA_romanov_NA_10bp_mCMV_NA"
## [1] "SMAD2::SMAD3::SMAD4_romanov_NA_21bp_mCMV_NA"
## [1] "POU5F1_5bp_10bp_3"
## [1] "THRB_5bp_10bp_1"
## [1] "REL_10bp_21bp_2"
## [1] "POU5F1::SOX2_5bp_21bp_1"
## [1] "STAT1::STAT2_neg_5bp_21bp_1"
## [1] "EGR1_10bp_21bp_2"
## [1] "WT1_10bp_21bp_3"
## [1] "POU5F1_5bp_21bp_3"
## [1] "MAFA_neg_5bp_10bp_1"
## [1] "FOS::JUN_TF-seq_NA_21bp_mCMV_NA"
## [1] "TCF7_10bp_10bp_2"
## [1] "ONECUT1_romanov_NA_10bp_mCMV_NA"
## [1] "NR1H2_neg_5bp_10bp_3"
## [1] "CEBPA_TF-seq_NA_21bp_mCMV_NA"
## [1] "NR1D1_neg_5bp_10bp_3"
## [1] "RXRA_neg_10bp_21bp_3"
## [1] "TCF7_neg_5bp_21bp_2"
## [1] "FOXO1_neg_10bp_10bp_2"
## [1] "STAT1::STAT2_5bp_10bp_3"
## [1] "ATF4_TF-seq_NA_10bp_mCMV_NA"
## [1] "NR4A2::RXRA_10bp_10bp_3"
## [1] "SMAD2::SMAD3::SMAD4_neg_10bp_10bp_1"
## [1] "NR1H4::RXRA_5bp_21bp_3"
## [1] "PGR_neg_10bp_10bp_1"
## [1] "T_neg_10bp_21bp_2"
## [1] "PPARG::RXRA_neg_5bp_21bp_2"
## [1] "HNF1A_neg_10bp_10bp_1"
## [1] "NR1I3_10bp_10bp_2"
## [1] "NFAT5_5bp_21bp_2"
## [1] "ONECUT1_5bp_10bp_2"
## [1] "RARA:RXRA_neg_10bp_10bp_2"
## [1] "MTF1_5bp_10bp_3"
## [1] "NFIA_5bp_10bp_1"
## [1] "NRF1_neg_10bp_10bp_1"
## [1] "EGR1_neg_10bp_21bp_3"
## [1] "NR1H4::RXRA_neg_5bp_10bp_1"
## [1] "NR2E3_neg_10bp_10bp_1"
## [1] "AHR::ARNT_10bp_10bp_1"
## [1] "VDR::RXRA_neg_5bp_21bp_1"
## [1] "MAF::NFE2_neg_10bp_10bp_2"
## [1] "SRF_5bp_10bp_3"
## [1] "TEAD1_neg_10bp_21bp_2"
## [1] "RFX1_neg_5bp_21bp_1"
## [1] "NR1D1_neg_5bp_21bp_2"
## [1] "THRA_5bp_21bp_2"
## [1] "NFATc1_neg_5bp_10bp_1"
## [1] "PGR_neg_5bp_10bp_2"
## [1] "FOSL1_neg_10bp_10bp_2"
## [1] "PGR_neg_5bp_21bp_1"
## [1] "WT1_10bp_10bp_1"
## [1] "NR1I3_10bp_10bp_1"
## [1] "GATA4_5bp_21bp_1"
## [1] "FOSL1_neg_10bp_10bp_3"
## [1] "MAFA_neg_10bp_21bp_2"
## [1] "E2F1_neg_5bp_10bp_1"
## [1] "PPARA::RXRA_neg_10bp_10bp_3"
## [1] "NR4A1_5bp_21bp_2"
## [1] "STAT5_TF-seq_NA_10bp_mCMV_NA"
## [1] "TP53_promega_NA_10bp_mCMV_NA"
## [1] "RXRA_10bp_10bp_2"
## [1] "RUNX2_5bp_10bp_1"
## [1] "ONECUT1_5bp_21bp_2"
## [1] "NR1I3_neg_10bp_10bp_3"
## [1] "STAT3_promega_NA_10bp_mCMV_NA"
## [1] "ETS1_neg_5bp_10bp_3"
## [1] "FOSL1_5bp_21bp_2"
## [1] "NR1H2_neg_10bp_10bp_2"
## [1] "MEF2A_neg_10bp_10bp_1"
## [1] "SOX9_5bp_21bp_3"
## [1] "VDR::RXRA_5bp_21bp_2"
## [1] "TFAP2A_neg_10bp_10bp_3"
## [1] "NRF1_neg_10bp_21bp_3"
## [1] "XBP1_10bp_21bp_3"
## [1] "VDR::RXRA_10bp_10bp_3"
## [1] "HNF4A_neg_10bp_21bp_3"
## [1] "SOX9_neg_5bp_21bp_1"
## [1] "RUNX2_neg_10bp_10bp_2"
## [1] "RORA_5bp_21bp_1"
## [1] "RXRA_neg_5bp_21bp_2"
## [1] "XBP1_neg_10bp_10bp_3"
## [1] "SMAD2::SMAD3::SMAD4_10bp_10bp_2"
## [1] "IRF1_TF-seq_NA_10bp_mCMV_NA"
## [1] "TCF7_TF-seq_NA_10bp_mCMV_NA"
## [1] "TCF7_neg_5bp_10bp_3"
## [1] "POU2F1_5bp_10bp_2"
## [1] "T_neg_10bp_10bp_2"
## [1] "FOS::JUN_neg_5bp_10bp_3"
## [1] "NR3C2_neg_10bp_21bp_2"
## [1] "HNF4A_neg_10bp_10bp_1"
## [1] "NFKB1_TF-seq_NA_10bp_mCMV_NA"
## [1] "RXRA_neg_5bp_10bp_1"
## [1] "NR3C2_neg_10bp_10bp_2"
## [1] "AR_neg_5bp_10bp_3"
## [1] "TCF7_neg_5bp_21bp_1"
## [1] "REL_10bp_21bp_3"
## [1] "POU5F1::SOX2_5bp_21bp_2"
## [1] "MYBL2_neg_10bp_10bp_1"
## [1] "PPARG::RXRA_neg_10bp_10bp_2"
## [1] "RXRA_neg_5bp_10bp_3"
## [1] "HNF1A_10bp_10bp_3"
## [1] "NR4A1_10bp_10bp_1"
## [1] "MTF1_5bp_21bp_1"
## [1] "SOX9_neg_5bp_10bp_1"
## [1] "TEAD1_10bp_10bp_3"
## [1] "E2F1_neg_10bp_21bp_2"
## [1] "MAF::NFE2_10bp_10bp_3"
## [1] "NR1H4::RXRA_TF-seq_NA_21bp_mCMV_NA"
## [1] "POU2F1_10bp_21bp_3"
## [1] "CEBPB_5bp_21bp_2"
## [1] "SRF_neg_10bp_10bp_3"
## [1] "TCF7_romanov_NA_10bp_mCMV_NA"
## [1] "NFATc1_neg_5bp_10bp_3"
## [1] "PPARA::RXRA_romanov_NA_10bp_mCMV_NA"
## [1] "POU5F1::SOX2_10bp_21bp_2"
## [1] "GATA1_romanov_NA_10bp_mCMV_NA"
## [1] "STAT1::STAT2_TF-seq_NA_10bp_mCMV_NA"
## [1] "NR1D1_10bp_21bp_1"
## [1] "PPARG::RXRA_10bp_21bp_3"
## [1] "PPARA::RXRA_neg_5bp_10bp_3"
## [1] "RARA:RXRA_5bp_21bp_1"
## [1] "NR4A2::RXRA_5bp_10bp_2"
## [1] "HSF1_romanov_NA_10bp_mCMV_NA"
## [1] "HSF1_5bp_21bp_3"
## [1] "PPARA::RXRA_neg_10bp_21bp_2"
## [1] "NR5A2_neg_10bp_10bp_1"
## [1] "THRB_10bp_10bp_1"
## [1] "MAFA_neg_5bp_10bp_3"
## [1] "NR1H4::RXRA_10bp_10bp_3"
## [1] "POU5F1::SOX2_5bp_10bp_2"
## [1] "FOXO1_10bp_10bp_3"
## [1] "TEAD1_TF-seq_NA_10bp_mCMV_NA"
## [1] "NFIA_5bp_21bp_1"
## [1] "EGR1_10bp_10bp_2"
## [1] "NR3C2_neg_5bp_10bp_3"
## [1] "FOXA1_10bp_21bp_3"
## [1] "TFAP2A_5bp_21bp_2"
## [1] "NR1I2_5bp_10bp_1"
## [1] "HNF4A_neg_5bp_10bp_2"
## [1] "POU2F1_neg_5bp_21bp_2"
## [1] "RUNX2_neg_5bp_21bp_3"
## [1] "ETS1_10bp_21bp_2"
## [1] "TEAD1_10bp_21bp_3"
## [1] "ESR1_neg_5bp_21bp_2"
## [1] "AHR::ARNT_neg_5bp_10bp_3"
## [1] "GATA1_neg_5bp_10bp_3"
## [1] "FOS::JUN_neg_10bp_10bp_2"
## [1] "MYBL2_10bp_10bp_3"
## [1] "FOSL1_neg_10bp_21bp_3"
## [1] "MTF1_10bp_10bp_3"
## [1] "IRF3_romanov_NA_10bp_mCMV_NA"
## [1] "NFATc1_5bp_21bp_2"
## [1] "FOXA1_5bp_21bp_1"
## [1] "MEF2A_neg_10bp_21bp_2"
## [1] "STAT6_TF-seq_NA_21bp_mCMV_NA"
## [1] "XBP1_5bp_21bp_2"
## [1] "RFX1_5bp_21bp_2"
## [1] "TCF7_neg_5bp_10bp_1"
## [1] "AR_5bp_10bp_2"
## [1] "FOSL1_neg_5bp_10bp_2"
## [1] "FOXA1_neg_5bp_10bp_1"
## [1] "REL_neg_5bp_10bp_2"
## [1] "T_neg_5bp_10bp_1"
## [1] "VDR::RXRA_5bp_10bp_3"
## [1] "GRHL1_10bp_10bp_1"
## [1] "MAFA_neg_10bp_10bp_3"
## [1] "POU2F1_5bp_21bp_2"
## [1] "NR1H4::RXRA_10bp_10bp_2"
## [1] "CEBPB_neg_10bp_21bp_2"
## [1] "HNF4A_5bp_10bp_2"
## [1] "HSF1_10bp_21bp_1"
## [1] "HNF1A_neg_10bp_10bp_3"
## [1] "E2F1_neg_10bp_10bp_1"
## [1] "NFATc1_5bp_10bp_3"
## [1] "PPARA::RXRA_neg_10bp_21bp_3"
## [1] "ONECUT1_10bp_10bp_3"
## [1] "AHR::ARNT_romanov_NA_10bp_mCMV_NA"
## [1] "SMAD2::SMAD3::SMAD4_5bp_21bp_3"
## [1] "AHR::ARNT_10bp_10bp_2"
## [1] "HSF1_10bp_10bp_1"
## [1] "ESR1_5bp_21bp_3"
## [1] "STAT4_TF-seq_NA_10bp_mCMV_NA"
## [1] "FOXA1_10bp_10bp_2"
## [1] "REL_5bp_21bp_1"
## [1] "STAT1::STAT2_5bp_21bp_1"
## [1] "HSF1_5bp_21bp_2"
## [1] "NR1I3_neg_5bp_10bp_3"
## [1] "TCF7_5bp_21bp_3"
## [1] "POU5F1::SOX2_neg_10bp_21bp_3"
## [1] "RARA:RXRA_10bp_10bp_2"
## [1] "NR1H2_5bp_21bp_1"
## [1] "E2F1_5bp_21bp_1"
## [1] "THRB_10bp_10bp_3"
## [1] "NR4A2::RXRA_5bp_10bp_1"
## [1] "WT1_5bp_21bp_2"
## [1] "AHR::ARNT_5bp_10bp_1"
## [1] "CEBPB_romanov_NA_10bp_mCMV_NA"
## [1] "REL_neg_10bp_21bp_2"
## [1] "MTF1_neg_5bp_21bp_2"
## [1] "FOS::JUN_10bp_21bp_2"
## [1] "NR1I2_10bp_10bp_1"
## [1] "RORA_neg_5bp_21bp_1"
## [1] "NFE2L2_promega_NA_10bp_mCMV_NA"
## [1] "MAFA_neg_5bp_21bp_1"
## [1] "GATA1_neg_5bp_21bp_2"
## [1] "POU5F1_neg_5bp_21bp_2"
## [1] "HSF1_neg_5bp_10bp_2"
## [1] "WT1_neg_10bp_21bp_3"
## [1] "NR1I2_5bp_21bp_1"
## [1] "XBP1_10bp_10bp_3"
## [1] "MYBL2_neg_5bp_21bp_1"
## [1] "NR3C1_romanov_NA_21bp_mCMV_NA"
## [1] "RORA_neg_10bp_10bp_1"
## [1] "NFKB1_TF-seq_NA_21bp_mCMV_NA"
## [1] "NR1I3_romanov_NA_21bp_mCMV_NA"
## [1] "ESR1_romanov_NA_10bp_mCMV_NA"
## [1] "HNF4A_10bp_21bp_2"
## [1] "NFATc1_10bp_10bp_2"
## [1] "WT1_10bp_10bp_3"
## [1] "PPARA::RXRA_neg_10bp_10bp_2"
## [1] "POU5F1::SOX2_neg_10bp_10bp_1"
## [1] "AR_neg_10bp_10bp_1"
## [1] "PGR_10bp_10bp_1"
## [1] "NR1I3_neg_10bp_10bp_1"
## [1] "SRF_neg_10bp_21bp_2"
## [1] "TCF7_neg_5bp_21bp_3"
## [1] "TEAD1_neg_10bp_10bp_2"
## [1] "MEF2A_neg_10bp_21bp_3"
## [1] "FOS::JUN_10bp_10bp_3"
## [1] "POU5F1_neg_10bp_21bp_3"
## [1] "FOXA1_neg_5bp_10bp_2"
## [1] "CEBPB_5bp_10bp_3"
## [1] "CLOCK_TF-seq_NA_10bp_mCMV_NA"
## [1] "STAT1::STAT2_neg_5bp_10bp_2"
## [1] "ELK1_TF-seq_NA_21bp_mCMV_NA"
## [1] "VDR::RXRA_neg_10bp_10bp_3"
## [1] "STAT3_romanov_NA_21bp_mCMV_NA"
## [1] "HNF4A_neg_5bp_21bp_2"
## [1] "TCF7_promega_long_NA_10bp_mCMV_NA"
## [1] "PPARG::RXRA_neg_5bp_10bp_3"
## [1] "SOX9_10bp_10bp_1"
## [1] "NRF1_neg_10bp_10bp_3"
## [1] "CEBPB_10bp_10bp_2"
## [1] "ETS1_neg_10bp_21bp_2"
## [1] "NR3C2_neg_10bp_21bp_3"
## [1] "ESR1_5bp_10bp_1"
## [1] "SOX2_10bp_21bp_3"
## [1] "NR1H2_TF-seq_NA_10bp_mCMV_NA"
## [1] "RORA_TF-seq_NA_21bp_mCMV_NA"
## [1] "FOS::JUN_5bp_10bp_2"
## [1] "RXRA_10bp_21bp_3"
## [1] "SMAD2::SMAD3::SMAD4_10bp_21bp_3"
## [1] "AR_neg_10bp_10bp_3"
## [1] "MAF::NFE2_5bp_10bp_1"
## [1] "RARA:RXRA_10bp_21bp_2"
## [1] "STAT5_TF-seq_NA_21bp_mCMV_NA"
## [1] "NFE2_romanov_NA_10bp_mCMV_NA"
## [1] "NR1H2_5bp_10bp_2"
## [1] "PPARA::RXRA_neg_10bp_10bp_1"
## [1] "EGR1_5bp_10bp_1"
## [1] "FOXO1_5bp_21bp_1"
## [1] "TFAP2A_5bp_21bp_3"
## [1] "HNF1A_10bp_10bp_1"
## [1] "CREB1_TF-seq_NA_21bp_mCMV_NA"
## [1] "HNF1A_neg_5bp_10bp_3"
## [1] "SRF_10bp_10bp_2"
## [1] "NR1I2_5bp_21bp_2"
## [1] "TFAP2A_neg_10bp_21bp_2"
## [1] "NR4A1_5bp_21bp_3"
## [1] "STAT1.49_TF-seq_NA_21bp_mCMV_NA"
## [1] "NR1H2_5bp_10bp_1"
## [1] "PPARG::PPARG_TF-seq_NA_21bp_mCMV_NA"
## [1] "NR1I2_5bp_10bp_2"
## [1] "GATA1_5bp_21bp_1"
## [1] "FOSL1_10bp_10bp_1"
## [1] "SMAD2::SMAD3::SMAD4_5bp_21bp_2"
## [1] "NFE2L2_romanov_NA_21bp_mCMV_NA"
## [1] "RUNX2_5bp_10bp_3"
## [1] "MTF1_neg_10bp_10bp_1"
## [1] "HNF1A_5bp_21bp_1"
## [1] "NR4A1_neg_5bp_21bp_1"
## [1] "NR1I3_neg_5bp_10bp_1"
## [1] "PPARG::RXRA_10bp_10bp_3"
## [1] "NR1D1_neg_10bp_10bp_1"
## [1] "FOXA1_neg_10bp_10bp_1"
## [1] "NR1I3_5bp_10bp_1"
## [1] "SOX2_neg_10bp_10bp_3"
## [1] "WT1_neg_5bp_21bp_1"
## [1] "STAT1::STAT2_5bp_10bp_1"
## [1] "TEAD1_neg_5bp_21bp_3"
## [1] "E2F1_5bp_21bp_2"
## [1] "MYBL2_5bp_21bp_1"
## [1] "ESR1_5bp_10bp_2"
## [1] "SRF_TF-seq_NA_10bp_mCMV_NA"
## [1] "AR_10bp_10bp_1"
## [1] "HNF1A_5bp_21bp_2"
## [1] "NR4A1_5bp_10bp_2"
## [1] "WT1_neg_5bp_10bp_2"
## [1] "FOXO1_10bp_21bp_2"
## [1] "THRB_neg_5bp_21bp_2"
## [1] "RFX1_5bp_10bp_1"
## [1] "RXRA_5bp_21bp_2"
## [1] "STAT1::STAT2_neg_10bp_21bp_3"
## [1] "ONECUT1_10bp_10bp_2"
## [1] "GATA1_neg_10bp_21bp_2"
## [1] "RUNX2_10bp_10bp_2"
## [1] "NR4A2::RXRA_neg_5bp_21bp_1"
## [1] "REL_neg_10bp_21bp_3"
## [1] "E2F1_10bp_21bp_3"
## [1] "FOXO1_TF-seq_NA_10bp_mCMV_NA"
## [1] "PPARA::RXRA_neg_5bp_10bp_2"
## [1] "NR1H4::RXRA_neg_10bp_21bp_2"
## [1] "FOS::JUN_10bp_10bp_2"
## [1] "REL_neg_10bp_10bp_3"
## [1] "PAX6_romanov_NA_10bp_mCMV_NA"
## [1] "FOSL1_5bp_10bp_3"
## [1] "ESR1_neg_10bp_10bp_3"
## [1] "SOX9_neg_5bp_10bp_2"
## [1] "HNF1A_10bp_10bp_2"
## [1] "RXRA_neg_10bp_10bp_1"
## [1] "NFIA_neg_5bp_21bp_3"
## [1] "RARA:RXRA_10bp_21bp_3"
## [1] "NR1H2_10bp_10bp_2"
## [1] "MTF1_promega_NA_21bp_mCMV_NA"
## [1] "RORA_neg_10bp_21bp_2"
## [1] "NFAT5_10bp_21bp_2"
## [1] "ETS1_10bp_10bp_3"
## [1] "SRF_promega_long_NA_10bp_mCMV_NA"
## [1] "AR_10bp_10bp_2"
## [1] "STAT1::STAT2_neg_10bp_10bp_3"
## [1] "NFE2L2_romanov_NA_10bp_mCMV_NA"
## [1] "XBP1_10bp_10bp_1"
## [1] "MYBL2_neg_10bp_10bp_3"
## [1] "SREBF1_TF-seq_NA_10bp_mCMV_NA"
## [1] "MEF2A_5bp_21bp_1"
## [1] "NFAT5_5bp_21bp_1"
## [1] "NR1I3_5bp_10bp_3"
## [1] "ATF6_promega_NA_21bp_mCMV_NA"
## [1] "FOS::JUN_neg_10bp_21bp_2"
## [1] "ETS1_5bp_10bp_2"
## [1] "NR3C2_5bp_10bp_2"
## [1] "HNF1A_neg_5bp_21bp_2"
## [1] "NR4A2::RXRA_neg_10bp_10bp_1"
## [1] "SREBF1_TF-seq_NA_21bp_mCMV_NA"
## [1] "NR5A2_neg_5bp_10bp_2"
## [1] "VDR::RXRA_5bp_10bp_2"
## [1] "MEF2A_5bp_10bp_2"
## [1] "POU5F1::SOX2_neg_10bp_21bp_2"
## [1] "FOSL1_neg_5bp_21bp_2"
## [1] "TCF7_promega_NA_10bp_mCMV_NA"
## [1] "XBP1_neg_10bp_10bp_1"
## [1] "NFATc1_neg_10bp_21bp_3"
## [1] "HNF4A_neg_10bp_10bp_3"
## [1] "TFAP2A_5bp_21bp_1"
## [1] "AHR::ARNT_10bp_21bp_3"
## [1] "PPARG::RXRA_5bp_21bp_1"
## [1] "CREB1_TF-romanov_NA_10bp_mCMV_NA"
## [1] "ONECUT1_5bp_21bp_1"
## [1] "RORA_5bp_10bp_2"
## [1] "SRF_5bp_10bp_1"
## [1] "THRA_neg_5bp_21bp_1"
## [1] "NR1D1_5bp_21bp_2"
## [1] "NFKB1_romanov_NA_21bp_mCMV_NA"
## [1] "SOX2_5bp_10bp_2"
## [1] "SOX2_10bp_10bp_3"
## [1] "XBP1_neg_5bp_10bp_3"
## [1] "NR1I3_romanov_NA_10bp_mCMV_NA"
## [1] "FOXA1_neg_10bp_10bp_2"
## [1] "VDR::RXRA_neg_5bp_10bp_2"
## [1] "ESR1_romanov_NA_21bp_mCMV_NA"
## [1] "PPARA::RXRA_5bp_21bp_1"
## [1] "WT1_5bp_21bp_1"
## [1] "SREBP_romanov_NA_10bp_mCMV_NA"
## [1] "SRF_5bp_21bp_1"
## [1] "CEBPB_neg_10bp_21bp_3"
## [1] "TCF7_5bp_10bp_3"
## [1] "NFATc1_neg_10bp_10bp_2"
## [1] "GATA1_10bp_10bp_1"
## [1] "EGR1_neg_5bp_21bp_3"
## [1] "POU2F1_romanov_NA_10bp_mCMV_NA"
## [1] "SMAD2::SMAD3::SMAD4_5bp_10bp_3"
## [1] "SOX2_neg_5bp_10bp_3"
## [1] "RARA:RXRA_neg_5bp_10bp_3"
## [1] "ESR1_neg_5bp_21bp_3"
## [1] "NR1I2_neg_10bp_21bp_2"
## [1] "POU5F1_neg_10bp_10bp_2"
## [1] "RARA:RXRA_10bp_10bp_3"
## [1] "CEBPB_neg_10bp_10bp_3"
## [1] "ONECUT1_10bp_21bp_3"
## [1] "NR1H2_romanov_NA_10bp_mCMV_NA"
## [1] "MTF1_neg_10bp_21bp_3"
## [1] "RORA_5bp_10bp_3"
## [1] "SMAD2::SMAD3::SMAD4_neg_5bp_10bp_1"
## [1] "HNF4A_10bp_21bp_3"
## [1] "NR1I3_neg_10bp_21bp_2"
## [1] "STAT1::STAT2_promega_NA_10bp_mCMV_NA"
## [1] "RUNX2_5bp_21bp_3"
## [1] "TCF7_TF-seq_NA_21bp_mCMV_NA"
## [1] "NR1I2_10bp_21bp_2"
## [1] "FOS::JUN_neg_5bp_10bp_1"
## [1] "SOX9_5bp_21bp_2"
## [1] "FOXA1_5bp_10bp_2"
## [1] "REL_neg_5bp_10bp_3"
## [1] "E2F1_romanov_NA_21bp_mCMV_NA"
## [1] "SREBP_romanov_NA_21bp_mCMV_NA"
## [1] "NR2E3_neg_5bp_10bp_2"
## [1] "SMAD2::SMAD3::SMAD4_romanov_NA_10bp_mCMV_NA"
## [1] "POU5F1::SOX2_5bp_10bp_1"
## [1] "PPARA::RXRA_neg_5bp_21bp_1"
## [1] "THRA_10bp_21bp_2"
## [1] "AR_neg_5bp_21bp_2"
## [1] "THRA_neg_10bp_10bp_3"
## [1] "GATA1_neg_5bp_10bp_1"
## [1] "TCF7_neg_10bp_10bp_1"
## [1] "STAT3_romanov_NA_10bp_mCMV_NA"
## [1] "FOSL1_10bp_10bp_3"
## [1] "WT1_neg_10bp_21bp_2"
## [1] "NR5A2_5bp_21bp_2"
## [1] "SMAD2::SMAD3::SMAD4_neg_5bp_21bp_1"
## [1] "POU5F1_neg_5bp_10bp_3"
## [1] "TCF7_10bp_10bp_1"
## [1] "XBP1_5bp_10bp_1"
## [1] "PGR_5bp_21bp_1"
## [1] "RUNX2_neg_5bp_10bp_1"
## [1] "POU5F1::SOX2_5bp_10bp_3"
## [1] "MAF::NFE2_5bp_10bp_2"
## [1] "RXRA_neg_5bp_10bp_2"
## [1] "MTF1_neg_10bp_10bp_3"
## [1] "FOSL1_10bp_21bp_2"
## [1] "STAT1.49_TF-seq_NA_10bp_mCMV_NA"
## [1] "FOSL1_neg_10bp_21bp_2"
## [1] "PPARG::RXRA_neg_5bp_21bp_1"
## [1] "MTF1_neg_10bp_10bp_2"
## [1] "NR1H4::RXRA_5bp_21bp_2"
## [1] "RXRA_5bp_10bp_2"
## [1] "GATA4_5bp_10bp_3"
## [1] "CEBPB_neg_5bp_21bp_1"
## [1] "NRF1_10bp_10bp_3"
## [1] "STAT3_TF-seq_NA_21bp_mCMV_NA"
## [1] "NR2E3_neg_5bp_21bp_3"
## [1] "PGR_10bp_21bp_2"
## [1] "RXRA_10bp_10bp_1"
## [1] "NFYA_TF-seq_NA_21bp_mCMV_NA"
## [1] "TFAP2A_neg_5bp_10bp_2"
## [1] "WT1_neg_10bp_10bp_1"
## [1] "STAT5_promega_NA_10bp_mCMV_NA"
## [1] "E2F1_10bp_10bp_2"
## [1] "PPARG::RXRA_neg_5bp_10bp_1"
## [1] "NR4A1_5bp_10bp_3"
## [1] "WT1_neg_5bp_21bp_2"
## [1] "NRF1_neg_10bp_10bp_2"
## [1] "NFIA_neg_5bp_10bp_1"
## [1] "CEBPB_5bp_10bp_2"
## [1] "POU2F1_10bp_10bp_2"
## [1] "MYBL2_neg_5bp_21bp_2"
## [1] "TFAP2A_10bp_10bp_2"
## [1] "SOX9_10bp_21bp_2"
## [1] "WT1_10bp_10bp_2"
## [1] "SRF_neg_5bp_10bp_2"
## [1] "MTF1_10bp_21bp_3"
## [1] "POU5F1_10bp_10bp_1"
## [1] "HNF4A_neg_10bp_10bp_2"
## [1] "RORA_10bp_10bp_3"
## [1] "NR5A2_10bp_10bp_3"
## [1] "HSF1_neg_10bp_21bp_2"
## [1] "FOS::JUN_5bp_10bp_3"
## [1] "MTF1_10bp_21bp_2"
## [1] "NFIA_10bp_10bp_3"
## [1] "EGR1_5bp_21bp_1"
## [1] "SRF_TF-seq_NA_21bp_mCMV_NA"
## [1] "SMAD2::SMAD3::SMAD4_neg_5bp_21bp_3"
## [1] "PGR_neg_10bp_21bp_3"
## [1] "MYBL2_neg_5bp_21bp_3"
## [1] "MEF2A_10bp_10bp_2"
## [1] "POU2F1_romanov_NA_21bp_mCMV_NA"
## [1] "CEBPA_TF-seq_NA_10bp_mCMV_NA"
## [1] "AHR::ARNT_10bp_21bp_2"
## [1] "ATF6_promega_long_NA_10bp_mCMV_NA"
## [1] "ATF6_promega_NA_10bp_mCMV_NA"
## [1] "FOXO1_10bp_21bp_1"
## [1] "NR1H2_TF-seq_NA_21bp_mCMV_NA"
## [1] "STAT3_TF-seq_NA_10bp_mCMV_NA"
## [1] "MYBL2_5bp_21bp_3"
## [1] "NFAT5_10bp_10bp_3"
## [1] "SMAD2::SMAD3::SMAD4_10bp_10bp_1"
## [1] "CEBPB_neg_10bp_10bp_1"
## [1] "PGR_neg_10bp_10bp_3"
## [1] "RFX1_neg_10bp_21bp_3"
## [1] "MAFA_neg_10bp_10bp_2"
## [1] "NR1H4::RXRA_5bp_21bp_1"
## [1] "RXRA_neg_10bp_10bp_3"
## [1] "E2F1_neg_5bp_10bp_2"
## [1] "NFE2L2_promega_NA_21bp_mCMV_NA"
## [1] "POU2F1_neg_5bp_10bp_3"
## [1] "SMAD2::SMAD3::SMAD4_5bp_10bp_1"
## [1] "NR4A2::RXRA_5bp_21bp_1"
## [1] "NR4A1_neg_5bp_10bp_3"
## [1] "SOX9_neg_5bp_10bp_3"
## [1] "E2F1_5bp_10bp_3"
## [1] "MAF::NFE2_neg_5bp_10bp_1"
## [1] "XBP1_10bp_10bp_2"
## [1] "RUNX2_10bp_10bp_3"
## [1] "PPARG::PPARG_TF-seq_NA_10bp_mCMV_NA"
## [1] "HNF4A_neg_10bp_21bp_2"
## [1] "RFX1_5bp_10bp_2"
## [1] "PPARG::RXRA_neg_5bp_10bp_2"
## [1] "NR1H4::RXRA_TF-seq_NA_10bp_mCMV_NA"
## [1] "FOXO1_10bp_21bp_3"
## [1] "IRF3_TF-seq_NA_21bp_mCMV_NA"
## [1] "MEF2A_neg_5bp_21bp_3"
## [1] "RXRA_5bp_21bp_1"
## [1] "HSF1_promega_NA_21bp_mCMV_NA"
## [1] "NR3C2_romanov_NA_21bp_mCMV_NA"
## [1] "FOXA1_romanov_NA_21bp_mCMV_NA"
## [1] "ONECUT1_5bp_21bp_3"
## [1] "PPARG::RXRA_10bp_10bp_1"
## [1] "HSF1_5bp_10bp_2"
## [1] "NR5A2_5bp_10bp_3"
## [1] "RUNX2_5bp_21bp_1"
## [1] "NR1I3_neg_10bp_21bp_3"
## [1] "MYBL2_5bp_21bp_2"
## [1] "ETS1_neg_5bp_21bp_1"
## [1] "CEBPB_10bp_10bp_1"
## [1] "NR2E3_neg_5bp_21bp_2"
## [1] "GRHL1_10bp_21bp_3"
## [1] "EGR1_neg_5bp_10bp_1"
## [1] "ONECUT1_neg_5bp_10bp_2"
## [1] "HNF4A_10bp_10bp_1"
## [1] "NFAT5_5bp_10bp_2"
## [1] "RARA_TF-seq_NA_21bp_mCMV_NA"
## [1] "AHR::ARNT_10bp_10bp_3"
## [1] "SRF_neg_5bp_21bp_2"
## [1] "TFAP2A_5bp_10bp_3"
## [1] "NR3C1_TF-seq_NA_21bp_mCMV_NA"
## [1] "NR2E3_neg_10bp_10bp_2"
## [1] "REL_5bp_21bp_2"
## [1] "ELK1_romanov_NA_21bp_mCMV_NA"
## [1] "FOXA1_neg_5bp_21bp_1"
## [1] "RORA_5bp_21bp_2"
## [1] "MYBL2_neg_5bp_10bp_2"
## [1] "NFIA_neg_5bp_10bp_2"
## [1] "NFATc1_neg_10bp_10bp_3"
## [1] "FOXO1_neg_10bp_21bp_3"
## [1] "NR5A2_neg_10bp_21bp_3"
## [1] "XBP1_TF-seq_NA_21bp_mCMV_NA"
## [1] "NFATc1_5bp_10bp_1"
## [1] "NR3C2_5bp_10bp_3"
## [1] "NR2E3_neg_5bp_10bp_1"
## [1] "CEBPB_10bp_21bp_2"
## [1] "E2F1_romanov_NA_10bp_mCMV_NA"
## [1] "GATA1_5bp_10bp_3"
## [1] "GATA1_neg_5bp_10bp_2"
## [1] "TEAD1_neg_5bp_21bp_2"
## [1] "SOX9_10bp_21bp_3"
## [1] "SP1_TF-seq_NA_10bp_mCMV_NA"
## [1] "NR1H4::RXRA_10bp_21bp_3"
## [1] "NRF1_5bp_21bp_2"
## [1] "WT1_neg_10bp_10bp_2"
## [1] "NFIA_neg_5bp_21bp_1"
## [1] "SOX2_neg_10bp_21bp_2"
## [1] "POU5F1::SOX2_neg_10bp_10bp_2"
## [1] "PPARG::RXRA_5bp_10bp_3"
## [1] "NR1I2_10bp_10bp_3"
## [1] "RXRA_neg_5bp_21bp_1"
## [1] "THRB_10bp_10bp_2"
## [1] "GATA3_TF-seq_NA_10bp_mCMV_NA"
## [1] "FOXA1_romanov_NA_10bp_mCMV_NA"
## [1] "SRE_promega_NA_21bp_mCMV_NA"
## [1] "NFIA_5bp_10bp_2"
## [1] "THRA_5bp_21bp_3"
## [1] "FOS::JUN_TF-seq_NA_10bp_mCMV_NA"
## [1] "THRB_neg_5bp_10bp_3"
## [1] "MTF1_5bp_10bp_1"
## [1] "PGR_neg_5bp_10bp_3"
## [1] "PGR_5bp_10bp_2"
## [1] "RARA:RXRA_5bp_21bp_2"
## [1] "RUNX2_10bp_21bp_3"
## [1] "TEAD1_neg_5bp_10bp_2"
## [1] "SOX9_10bp_10bp_3"
## [1] "NR1D1_5bp_10bp_1"
## [1] "NR4A1_neg_5bp_21bp_3"
## [1] "TCF7_5bp_10bp_2"
## [1] "REL_neg_10bp_10bp_1"
## [1] "NR3C2_neg_10bp_10bp_1"
## [1] "NR1H2_10bp_21bp_2"
## [1] "NRF1_10bp_10bp_2"
## [1] "ESR1_neg_10bp_10bp_1"
## [1] "ELK1_romanov_NA_10bp_mCMV_NA"
## [1] "GATA4_5bp_10bp_1"
## [1] "NFIA_neg_10bp_21bp_3"
## [1] "FOXO1_neg_5bp_21bp_3"
## [1] "GATA1_neg_5bp_21bp_1"
## [1] "THRA_5bp_10bp_1"
## [1] "MTF1_5bp_21bp_2"
## [1] "NR1I3_10bp_10bp_3"
## [1] "HSF1_neg_5bp_10bp_3"
## [1] "AHR::ARNT_neg_10bp_10bp_2"
## [1] "SOX2_neg_5bp_10bp_2"
## [1] "SOX2_neg_5bp_21bp_1"
## [1] "THRB_10bp_21bp_2"
## [1] "MAF::NFE2_TF-seq_NA_10bp_mCMV_NA"
## [1] "CREB1_TF-seq_NA_10bp_mCMV_NA"
## [1] "NR5A2_neg_5bp_10bp_1"
## [1] "SOX9_neg_10bp_21bp_3"
## [1] "HNF1A_neg_5bp_10bp_2"
## [1] "VDR::RXRA_neg_5bp_10bp_1"
## [1] "RARA:RXRA_5bp_10bp_3"
## [1] "MAFA_neg_10bp_10bp_1"
## [1] "NR1H4::RXRA_neg_5bp_21bp_1"
## [1] "MTF1_promega_NA_10bp_mCMV_NA"
## [1] "TFAP2A_neg_5bp_10bp_3"
## [1] "NFIA_neg_5bp_21bp_2"
## [1] "GATA1_neg_10bp_10bp_2"
## [1] "MEF2A_neg_5bp_21bp_1"
## [1] "ETS1_5bp_21bp_1"
## [1] "AHR::ARNT_neg_10bp_21bp_2"
## [1] "NRF1_neg_5bp_10bp_2"
## [1] "GATA1_5bp_10bp_1"
## [1] "SMAD2::SMAD3::SMAD4_10bp_21bp_2"
## [1] "RARA:RXRA_TF-seq_NA_21bp_mCMV_NA"
## [1] "MTF1_neg_5bp_10bp_3"
## [1] "TFAP2A_10bp_21bp_3"
## [1] "HNF4A_neg_5bp_10bp_3"
## [1] "MEF2A_5bp_10bp_1"
## [1] "SMAD2::SMAD3::SMAD4_neg_10bp_10bp_2"
## [1] "RFX1_10bp_10bp_2"
## [1] "FOS::JUN_neg_5bp_21bp_2"
## [1] "AHR::ARNT_neg_5bp_21bp_1"
## [1] "NFIA_neg_10bp_10bp_3"
## [1] "TEAD1_5bp_10bp_3"
## [1] "RUNX2_10bp_10bp_1"
## [1] "CEBPB_10bp_21bp_3"
## [1] "GATA1_10bp_21bp_3"
## [1] "RXRA_neg_5bp_21bp_3"
## [1] "FOXO1_5bp_21bp_3"
## [1] "CEBPB_neg_5bp_21bp_2"
## [1] "CLOCK_TF-seq_NA_21bp_mCMV_NA"
## [1] "EGR1_neg_5bp_21bp_1"
## [1] "ETS1_romanov_NA_21bp_mCMV_NA"
## [1] "SRF_5bp_21bp_3"
## [1] "RARA:RXRA_10bp_10bp_1"
## [1] "POU2F1_5bp_10bp_1"
## [1] "TEAD1_5bp_10bp_1"
## [1] "NR4A1_5bp_10bp_1"
## [1] "NR1H4::RXRA_neg_10bp_10bp_3"
## [1] "GRHL1_5bp_10bp_1"
## [1] "SRF_neg_10bp_10bp_2"
## [1] "NR5A2_neg_5bp_21bp_3"
## [1] "T_neg_5bp_10bp_2"
## [1] "RBPJ_TF-seq_NA_21bp_mCMV_NA"
## [1] "SMAD2::SMAD3::SMAD4_10bp_10bp_3"
## [1] "FOSL1_neg_5bp_10bp_1"
## [1] "POU2F1_neg_5bp_10bp_2"
## [1] "HNF1A_5bp_10bp_1"
## [1] "E2F1_5bp_10bp_1"
## [1] "NR4A2::RXRA_10bp_21bp_3"
## [1] "TCF7_neg_10bp_10bp_3"
## [1] "THRB_neg_10bp_21bp_2"
## [1] "PGR_neg_5bp_21bp_3"
## [1] "FOXA1_neg_5bp_21bp_2"
## [1] "REL_10bp_10bp_1"
## [1] "ETS1_neg_10bp_10bp_3"
## [1] "HNF4A_neg_5bp_21bp_3"
## [1] "SRF_10bp_21bp_2"
## [1] "GLI1_TF-seq_NA_10bp_mCMV_NA"
## [1] "REL_TF-seq_NA_10bp_mCMV_NA"
## [1] "ETS1_neg_10bp_10bp_2"
## [1] "MAF::NFE2_neg_10bp_10bp_3"
## [1] "HIF1A_promega_NA_21bp_mCMV_NA"
## [1] "NR5A2_neg_5bp_21bp_1"
## [1] "RORA_10bp_21bp_3"
## [1] "POU5F1_5bp_21bp_2"
## [1] "POU5F1::SOX2_neg_5bp_10bp_2"
## [1] "STAT5_promega_long_NA_10bp_mCMV_NA"
## [1] "PPARA::RXRA_romanov_NA_21bp_mCMV_NA"
## [1] "T_neg_5bp_21bp_2"
## [1] "NR1H4::RXRA_neg_5bp_10bp_2"
## [1] "MEF2A_10bp_10bp_3"
## [1] "ESR1_5bp_21bp_2"
## [1] "RFX1_neg_5bp_10bp_3"
## [1] "ONECUT1_neg_10bp_21bp_3"
## [1] "MEF2A_neg_5bp_10bp_2"
## [1] "CEBPB_5bp_21bp_1"
## [1] "NFIA_neg_10bp_10bp_1"
## [1] "AHR::ARNT_5bp_21bp_2"
## [1] "REL_TF-seq_NA_21bp_mCMV_NA"
## [1] "NR5A2_5bp_10bp_2"
## [1] "WT1_5bp_10bp_3"
## [1] "NR5A2_neg_10bp_10bp_3"
## [1] "FOS::JUN_neg_5bp_10bp_2"
## [1] "SOX9_5bp_21bp_1"
## [1] "RFX1_neg_10bp_10bp_2"
## [1] "GATA1_neg_5bp_21bp_3"
## [1] "RUNX2_10bp_21bp_2"
## [1] "HSF1_promega_long_NA_10bp_mCMV_NA"
## [1] "PPARA::RXRA_neg_5bp_21bp_3"
## [1] "AHR::ARNT_5bp_10bp_2"
## [1] "RUNX2_TF-seq_NA_10bp_mCMV_NA"
## [1] "SOX2_neg_5bp_21bp_2"
## [1] "FOXO1_5bp_10bp_2"
## [1] "POU5F1::SOX2_neg_5bp_21bp_1"
## [1] "STAT1::STAT2_neg_10bp_10bp_2"
## [1] "PPARG::RXRA_5bp_10bp_2"
## [1] "NFATc1_10bp_21bp_3"
## [1] "POU5F1::SOX2_neg_5bp_21bp_2"
## [1] "TFAP2A_10bp_10bp_1"
## [1] "CREB1_promega_NA_10bp_mCMV_NA"
## [1] "ETS1_neg_5bp_21bp_2"
## [1] "FOXO1_5bp_21bp_2"
## [1] "MYBL2_neg_5bp_10bp_3"
## [1] "NR1I3_10bp_21bp_3"
## [1] "NR1H2_5bp_21bp_2"
## [1] "TFEB_TF-seq_NA_10bp_mCMV_NA"
## [1] "PPARA::RXRA_neg_5bp_21bp_2"
## [1] "POU5F1_5bp_21bp_1"
## [1] "SMAD2::SMAD3::SMAD4_TF-seq_NA_10bp_mCMV_NA"
## [1] "MAF::NFE2_5bp_21bp_1"
## [1] "HNF4A_TF-seq_NA_10bp_mCMV_NA"
## [1] "HNF1A_10bp_21bp_2"
## [1] "PPARA::RXRA_10bp_10bp_1"
## [1] "ONECUT1_neg_10bp_21bp_2"
## [1] "NR5A2_neg_5bp_21bp_2"
## [1] "NFIA_5bp_10bp_3"
## [1] "GATA4_10bp_10bp_1"
## [1] "NR3C2_romanov_NA_10bp_mCMV_NA"
## [1] "POU5F1_5bp_10bp_2"
## [1] "FOS::JUN_promega_NA_10bp_mCMV_NA"
## [1] "AHR::ARNT_neg_5bp_10bp_1"
## [1] "ETS1_10bp_21bp_3"
## [1] "XBP1_promega_long_NA_10bp_mCMV_NA"
## [1] "GATA4_10bp_10bp_2"
## [1] "PPARG::RXRA_TF-seq_NA_10bp_mCMV_NA"
## [1] "NR5A2_neg_10bp_10bp_2"
## [1] "XBP1_promega_NA_21bp_mCMV_NA"
## [1] "SP1_TF-seq_NA_21bp_mCMV_NA"
## [1] "NR1H4::RXRA_neg_5bp_21bp_2"
## [1] "REL_5bp_10bp_1"
## [1] "NR1H4::RXRA_10bp_10bp_1"
## [1] "POU2F1_10bp_21bp_2"
## [1] "HNF1A_neg_10bp_21bp_2"
## [1] "STAT1::STAT2_5bp_21bp_3"
## [1] "SOX2_romanov_NA_10bp_mCMV_NA"
## [1] "NRF1_neg_5bp_21bp_1"
## [1] "PPARA::RXRA_10bp_21bp_2"
## [1] "NR1I2_neg_10bp_10bp_2"
## [1] "NR3C2_neg_5bp_21bp_1"
## [1] "NFE2_romanov_NA_21bp_mCMV_NA"
## [1] "NRF1_5bp_21bp_3"
## [1] "MYBL2_5bp_10bp_3"
## [1] "MAF::NFE2_neg_5bp_21bp_1"
## [1] "FOS::JUN_5bp_10bp_1"
## [1] "AHR::ARNT_neg_5bp_21bp_2"
## [1] "TCF7_romanov_NA_21bp_mCMV_NA"
## [1] "TEAD1_neg_5bp_21bp_1"
## [1] "MAF::NFE2_neg_5bp_21bp_2"
## [1] "SMAD2::SMAD3::SMAD4_promega_NA_21bp_mCMV_NA"
## [1] "NFAT5_10bp_10bp_1"
## [1] "XBP1_neg_5bp_21bp_1"
## [1] "SOX2_10bp_21bp_1"
## [1] "MAF::NFE2_neg_10bp_21bp_3"
## [1] "TFAP2A_5bp_10bp_1"
## [1] "STAT1::STAT2_10bp_10bp_1"
## [1] "REL_neg_5bp_10bp_1"
## [1] "MAFA_neg_5bp_21bp_2"
## [1] "HNF1A_5bp_21bp_3"
## [1] "MYBL2_neg_5bp_10bp_1"
## [1] "NR2E3_neg_10bp_21bp_3"
## [1] "NFATc1_neg_5bp_21bp_3"
## [1] "IRF3_promega_NA_10bp_mCMV_NA"
## [1] "MYBL2_5bp_10bp_1"
## [1] "FOXA1_10bp_10bp_3"
## [1] "VDR::RXRA_neg_5bp_21bp_2"
## [1] "AR_5bp_21bp_2"
## [1] "PPARG::RXRA_neg_10bp_10bp_1"
## [1] "HSF1_romanov_NA_21bp_mCMV_NA"
## [1] "RORA_neg_5bp_10bp_3"
## [1] "NR1D1_neg_5bp_21bp_1"
## [1] "SP1_romanov_NA_21bp_mCMV_NA"
## [1] "HNF4A_5bp_21bp_1"
## [1] "NFIA_10bp_21bp_2"
## [1] "AR_neg_10bp_21bp_3"
## [1] "HSF1_10bp_21bp_3"
## [1] "POU5F1_10bp_21bp_2"
## [1] "NR1H4::RXRA_neg_10bp_21bp_3"
## [1] "GATA4_10bp_10bp_3"
## [1] "MAFA_neg_5bp_21bp_3"
## [1] "NR4A2::RXRA_10bp_10bp_1"
## [1] "ONECUT1_romanov_NA_21bp_mCMV_NA"
## [1] "POU2F1_neg_10bp_10bp_2"
## [1] "NR1I3_neg_5bp_10bp_2"
## [1] "XBP1_5bp_21bp_1"
## [1] "TFAP2A_romanov_NA_21bp_mCMV_NA"
## [1] "NR5A2_5bp_21bp_1"
## [1] "TCF7_neg_10bp_21bp_2"
## [1] "MEF2A_neg_5bp_10bp_3"
## [1] "TCF7_5bp_21bp_1"
## [1] "NR4A1_10bp_10bp_3"
## [1] "FOXO1_neg_10bp_21bp_2"
## [1] "NR5A2_10bp_21bp_2"
## [1] "PPARG::RXRA_10bp_10bp_2"
## [1] "E2F1_neg_5bp_21bp_1"
## [1] "RARA:RXRA_neg_5bp_10bp_2"
## [1] "HNF4A_5bp_10bp_1"
## [1] "AR_neg_10bp_10bp_2"
## [1] "NR2E3_neg_10bp_10bp_3"
## [1] "MYBL2_neg_10bp_21bp_3"
## [1] "NR1H2_neg_10bp_10bp_1"
## [1] "SRF_10bp_10bp_1"
## [1] "PGR_neg_10bp_10bp_2"
## [1] "RXRA_5bp_10bp_1"
## [1] "SOX9_neg_5bp_21bp_2"
## [1] "NFATc1_5bp_21bp_1"
## [1] "NR3C2_10bp_10bp_2"
## [1] "PPARA::RXRA_5bp_10bp_1"
## [1] "VDR::RXRA_neg_10bp_10bp_1"
## [1] "SOX9_neg_5bp_21bp_3"
## [1] "NR3C2_10bp_10bp_1"
## [1] "EGR1_neg_10bp_10bp_1"
## [1] "VDR::RXRA_5bp_10bp_1"
## [1] "THRA_5bp_10bp_2"
## [1] "MAF::NFE2_TF-seq_NA_21bp_mCMV_NA"
## [1] "XBP1_romanov_NA_10bp_mCMV_NA"
## [1] "THRB_neg_10bp_10bp_1"
## [1] "CEBPB_neg_5bp_21bp_3"
## [1] "STAT1.50_TF-seq_NA_21bp_mCMV_NA"
## [1] "NRF1_neg_10bp_21bp_2"
## [1] "ATF6_TF-seq_NA_21bp_mCMV_NA"
## [1] "SRF_neg_5bp_10bp_3"
## [1] "HNF1A_neg_5bp_21bp_1"
## [1] "RFX1_5bp_21bp_3"
## [1] "RORA_neg_5bp_10bp_1"
## [1] "CEBPB_neg_5bp_10bp_2"
## [1] "NR4A2::RXRA_neg_10bp_10bp_3"
## [1] "CEBPB_neg_5bp_10bp_3"
## [1] "PPARA::RXRA_10bp_10bp_2"
## [1] "NR5A2_10bp_10bp_2"
## [1] "RARA_TF-seq_NA_10bp_mCMV_NA"
## [1] "HSF1_neg_10bp_10bp_2"
## [1] "AHR::ARNT_neg_5bp_10bp_2"
## [1] "NFKB1_promega_long_NA_10bp_mCMV_NA"
## [1] "WT1_5bp_21bp_3"
## [1] "NFATc1_10bp_10bp_3"
## [1] "PPARA::RXRA_5bp_10bp_2"
## [1] "NR5A2_10bp_10bp_1"
## [1] "NFATc1_neg_10bp_21bp_2"
## [1] "HSF1_neg_10bp_10bp_1"
## [1] "MYBL2_10bp_21bp_2"
## [1] "ATF2_TF-seq_NA_10bp_mCMV_NA"
## [1] "HSF1_5bp_21bp_1"
## [1] "MTF1_5bp_21bp_3"
## [1] "VDR::RXRA_5bp_21bp_1"
## [1] "ETS1_neg_10bp_21bp_3"
## [1] "RUNX2_neg_10bp_21bp_3"
## [1] "AHR::ARNT_TF-seq_NA_21bp_mCMV_NA"
## [1] "HNF1A_5bp_10bp_2"
## [1] "E2F1_neg_5bp_10bp_3"
## [1] "TP53_romanov_NA_10bp_mCMV_NA"
## [1] "NRF1_5bp_21bp_1"
## [1] "GATA1_10bp_10bp_2"
## [1] "ESR1_5bp_10bp_3"
## [1] "MAF::NFE2_neg_10bp_10bp_1"
## [1] "RARA:RXRA_neg_5bp_21bp_1"
## [1] "PPARG::RXRA_neg_10bp_21bp_3"
## [1] "STAT5_promega_NA_21bp_mCMV_NA"
## [1] "TFAP2A_10bp_10bp_3"
## [1] "ESR1_neg_5bp_10bp_2"
## [1] "TEAD1_10bp_21bp_2"
## [1] "NFIA_5bp_21bp_3"
## [1] "SOX2_5bp_21bp_2"
## [1] "TCF7_neg_10bp_10bp_2"
## [1] "ELK1_TF-seq_NA_10bp_mCMV_NA"
## [1] "SMAD2::SMAD3::SMAD4_neg_5bp_10bp_3"
## [1] "RXRA_10bp_10bp_3"
## [1] "MAF::NFE2_neg_5bp_21bp_3"
## [1] "HNF1A_neg_5bp_21bp_3"
## [1] "ESR1_10bp_10bp_3"
## [1] "THRA_neg_10bp_10bp_2"
## [1] "MTF1_10bp_10bp_2"
## [1] "GATA1_10bp_10bp_3"
## [1] "AHR::ARNT_neg_10bp_10bp_1"
## [1] "SRF_10bp_21bp_3"
## [1] "PPARA::RXRA_10bp_10bp_3"
## [1] "SMAD2::SMAD3::SMAD4_5bp_10bp_2"
## [1] "PPARG::RXRA_10bp_21bp_2"
## [1] "NR4A1_neg_10bp_10bp_2"
## [1] "THRA_neg_5bp_21bp_3"
## [1] "NR1D1_5bp_10bp_3"
## [1] "RXRA_5bp_10bp_3"
## [1] "NFIA_neg_10bp_21bp_2"
## [1] "POU5F1_10bp_21bp_3"
## [1] "NR4A2::RXRA_neg_5bp_10bp_2"
## [1] "RFX1_neg_10bp_10bp_1"
## [1] "NR4A2::RXRA_5bp_10bp_3"
## [1] "SRF_neg_10bp_10bp_1"
## [1] "NR3C2_10bp_21bp_2"
## [1] "TFAP2A_neg_10bp_10bp_2"
## [1] "ESR1_neg_5bp_10bp_1"
## [1] "AR_neg_10bp_21bp_2"
## [1] "SOX9_5bp_10bp_3"
## [1] "NRF1_neg_5bp_21bp_2"
## [1] "POU2F1_neg_10bp_21bp_2"
## [1] "NR1I2_5bp_10bp_3"
## [1] "NR4A1_neg_10bp_21bp_2"
## [1] "XBP1_neg_5bp_10bp_1"
## [1] "ONECUT1_neg_5bp_21bp_2"
## [1] "RFX1_10bp_10bp_1"
## [1] "GRHL1_10bp_21bp_2"
## [1] "STAT1_TF-seq_NA_10bp_mCMV_NA"
## [1] "FOXA1_5bp_21bp_3"
## [1] "NR4A2::RXRA_neg_10bp_21bp_3"
## [1] "RFX1_neg_5bp_10bp_2"
## [1] "AR_10bp_21bp_2"
## [1] "POU2F1_5bp_21bp_3"
## [1] "GATA1_10bp_21bp_2"
## [1] "RFX1_10bp_21bp_3"
## [1] "REL_10bp_10bp_3"
## [1] "FOSL1_5bp_21bp_1"
## [1] "EGR1_neg_10bp_10bp_3"
## [1] "NR1I2_neg_10bp_10bp_3"
## [1] "THRA_neg_5bp_10bp_2"
## [1] "SP1_romanov_NA_10bp_mCMV_NA"
## [1] "STAT3_promega_NA_21bp_mCMV_NA"
## [1] "STAT1::STAT2_neg_5bp_21bp_3"
## [1] "RFX1_neg_10bp_21bp_2"
## [1] "FOSL1_10bp_10bp_2"
## [1] "NR1I2_10bp_21bp_3"
## [1] "CREL_TF-seq_NA_10bp_mCMV_NA"
## [1] "NRF1_5bp_10bp_1"
## [1] "SOX9_5bp_10bp_1"
## [1] "CREL_TF-seq_NA_21bp_mCMV_NA"
## [1] "ONECUT1_neg_5bp_21bp_1"
## [1] "AR_5bp_21bp_3"
## [1] "POU5F1::SOX2_neg_10bp_10bp_3"
## [1] "FOXA1_5bp_10bp_1"
## [1] "NR1H4::RXRA_neg_10bp_10bp_2"
## [1] "MAF::NFE2_5bp_21bp_2"
## [1] "MTF1_neg_5bp_21bp_3"
## [1] "FOXA1_10bp_21bp_2"
## [1] "GATA4_5bp_21bp_2"
## [1] "SRF_10bp_10bp_3"
## [1] "FOS::JUN_neg_5bp_21bp_1"
## [1] "THRA_neg_5bp_10bp_1"
## [1] "NR5A2_neg_5bp_10bp_3"
## [1] "FOS::JUN_promega_NA_21bp_mCMV_NA"
## [1] "ONECUT1_neg_10bp_10bp_3"
## [1] "HIF1A_promega_long_NA_10bp_mCMV_NA"
## [1] "TCF7_10bp_21bp_3"
## [1] "RUNX2_neg_10bp_21bp_2"
## [1] "SOX2_neg_10bp_10bp_1"
## [1] "NFIA_neg_5bp_10bp_3"
## [1] "NR3C2_neg_5bp_10bp_1"
## [1] "CEBPB_romanov_NA_21bp_mCMV_NA"
## [1] "RORA_10bp_10bp_1"
## [1] "SOX2_5bp_10bp_1"
## [1] "TEAD1_TF-seq_NA_21bp_mCMV_NA"
## [1] "XBP1_romanov_NA_21bp_mCMV_NA"
## [1] "THRB_neg_5bp_21bp_1"
## [1] "NR1I2_neg_10bp_10bp_1"
## [1] "HSF1_5bp_10bp_3"
## [1] "TEAD1_neg_10bp_10bp_1"
## [1] "EGR1_neg_10bp_10bp_2"
## [1] "ESR1_10bp_10bp_2"
## [1] "NR1I3_5bp_21bp_2"
## [1] "POU5F1::SOX2_10bp_10bp_3"
## [1] "TEAD1_neg_5bp_10bp_3"
## [1] "NR4A2::RXRA_neg_10bp_10bp_2"
## [1] "NR1H2_romanov_NA_21bp_mCMV_NA"
## [1] "HSF1_10bp_10bp_3"
## [1] "EGR1_neg_5bp_21bp_2"
## [1] "NR4A1_5bp_21bp_1"
## [1] "RFX1_10bp_10bp_3"
## [1] "GRHL1_5bp_21bp_1"
## [1] "NFATc1_neg_10bp_10bp_1"
## [1] "EGR1_neg_5bp_10bp_3"
## [1] "PGR_10bp_10bp_2"
## [1] "TEAD1_5bp_21bp_1"
## [1] "E2F1_neg_5bp_21bp_3"
## [1] "TEAD1_neg_5bp_10bp_1"
## [1] "NR1H2_neg_5bp_21bp_1"
## [1] "ONECUT1_neg_10bp_10bp_1"
## [1] "STAT1::STAT2_promega_NA_21bp_mCMV_NA"
## [1] "RUNX2_TF-seq_NA_21bp_mCMV_NA"
## [1] "TEAD1_5bp_21bp_3"
## [1] "ETS1_5bp_10bp_3"
## [1] "STAT1::STAT2_10bp_21bp_2"
## [1] "GRHL1_5bp_21bp_3"
## [1] "GRHL1_5bp_21bp_2"
## [1] "RARA:RXRA_neg_10bp_10bp_1"
## [1] "SMAD2::SMAD3::SMAD4_neg_10bp_21bp_2"
## [1] "THRA_10bp_10bp_2"
## [1] "MAF::NFE2_neg_10bp_21bp_2"
## [1] "NFIA_10bp_21bp_3"
## [1] "SOX9_neg_10bp_21bp_2"
## [1] "HIF1A_promega_NA_10bp_mCMV_NA"
## [1] "ETS1_5bp_10bp_1"
## [1] "NFATc1_10bp_10bp_1"
## [1] "NRF1_5bp_10bp_2"
## [1] "AHR::ARNT_5bp_10bp_3"
## [1] "POU2F1_10bp_10bp_3"
## [1] "WT1_10bp_21bp_2"
## [1] "ONECUT1_10bp_10bp_1"
## [1] "NRF1_neg_5bp_21bp_3"
## [1] "TFAP2A_neg_5bp_21bp_3"
## [1] "RORA_TF-seq_NA_10bp_mCMV_NA"
## [1] "FOXO1_neg_5bp_21bp_2"
## [1] "NR1I3_neg_10bp_10bp_2"
## [1] "MTF1_neg_5bp_10bp_1"
## [1] "MAF::NFE2_5bp_10bp_3"
## [1] "FOS::JUN_5bp_21bp_2"
## [1] "POU2F1_5bp_10bp_3"
## [1] "TEAD1_5bp_21bp_2"
## [1] "HSF1_10bp_10bp_2"
## [1] "REL_neg_5bp_21bp_1"
## [1] "NR1H2_neg_5bp_10bp_1"
## [1] "XBP1_neg_5bp_21bp_3"
## [1] "NR1I2_5bp_21bp_3"
## [1] "WT1_neg_5bp_10bp_3"
## [1] "RFX1_neg_5bp_21bp_3"
## [1] "NFE2L2_TF-seq_NA_21bp_mCMV_NA"
## [1] "NR1H2_10bp_10bp_1"
## [1] "TEAD1_neg_10bp_21bp_3"
## [1] "MTF1_neg_10bp_21bp_1"
## [1] "PPARG::RXRA_TF-seq_NA_21bp_mCMV_NA"
## [1] "PPARG::RXRA_neg_10bp_10bp_3"
## [1] "NFATc1_neg_5bp_10bp_2"
## [1] "POU5F1_5bp_10bp_1"
## [1] "NR3C2_10bp_10bp_3"
## [1] "FOS::JUN_10bp_10bp_1"
## [1] "SOX9_neg_10bp_10bp_1"
## [1] "NR1H2_neg_10bp_21bp_3"
## [1] "XBP1_TF-seq_NA_10bp_mCMV_NA"
## [1] "ESR1_5bp_21bp_1"
## [1] "SRF_neg_10bp_21bp_3"
## [1] "POU5F1::SOX2_5bp_21bp_3"
## [1] "MYBL2_neg_10bp_10bp_2"
## [1] "AR_neg_5bp_21bp_3"
## [1] "ONECUT1_5bp_10bp_3"
## [1] "RORA_neg_10bp_10bp_2"
## [1] "THRB_neg_10bp_10bp_2"
## [1] "SRF_5bp_10bp_2"
## [1] "HNF4A_5bp_21bp_2"
## [1] "NFIA_5bp_21bp_2"
## [1] "FOXA1_neg_5bp_10bp_3"
## [1] "VDR::RXRA_10bp_21bp_3"
## [1] "VDR::RXRA_10bp_10bp_1"
## [1] "RFX1_neg_10bp_10bp_3"
## [1] "TP53_promega_long_NA_10bp_mCMV_NA"
## [1] "ETS1_neg_5bp_10bp_1"
## [1] "NR4A2::RXRA_neg_5bp_21bp_3"
## [1] "CEBPB_TF-seq_NA_10bp_mCMV_NA"
## [1] "VDR::RXRA_neg_10bp_10bp_2"
## [1] "AHR::ARNT_neg_10bp_21bp_3"
## [1] "NR1H4::RXRA_10bp_21bp_2"
## [1] "FOSL1_5bp_10bp_1"
## [1] "FOS::JUN_neg_10bp_21bp_3"
## [1] "ATF6_TF-seq_NA_10bp_mCMV_NA"
## [1] "HNF4A_5bp_10bp_3"
## [1] "STAT1::STAT2_neg_5bp_10bp_1"
## [1] "RUNX2_neg_10bp_10bp_3"
## [1] "MAFA_neg_10bp_21bp_3"
## [1] "WT1_neg_5bp_10bp_1"
## [1] "TCF7_10bp_21bp_2"
## [1] "MYBL2_10bp_10bp_2"
## [1] "FOS::JUN_5bp_21bp_3"
## [1] "TCF7_neg_5bp_10bp_2"
## [1] "CEBPB_neg_5bp_10bp_1"
## [1] "RFX1_neg_10bp_21bp_1"
## [1] "PGR_5bp_10bp_3"
## [1] "HSF1_5bp_10bp_1"
## [1] "EGR1_5bp_10bp_3"
## [1] "SMAD2::SMAD3::SMAD4_promega_NA_10bp_mCMV_NA"
## [1] "NR1H2_neg_5bp_21bp_2"
## [1] "EGR1_10bp_10bp_3"
## [1] "STAT1::STAT2_neg_10bp_10bp_1"
## [1] "NRF1_10bp_21bp_3"
## [1] "TFAP2A_neg_10bp_21bp_3"
## [1] "NR1D1_10bp_10bp_1"
## [1] "XBP1_neg_5bp_21bp_2"
## [1] "GATA1_romanov_NA_21bp_mCMV_NA"
## [1] "FOXA1_neg_10bp_21bp_3"
## [1] "HSF1_10bp_21bp_2"
## [1] "HSF1_neg_5bp_21bp_2"
## [1] "THRB_neg_10bp_10bp_3"
## [1] "IRF3_promega_NA_21bp_mCMV_NA"
## [1] "FOXO1_neg_5bp_21bp_1"
## [1] "MAF::NFE2_neg_5bp_10bp_2"
## [1] "Myc_romanov_NA_21bp_mCMV_NA"
## [1] "ETS1_neg_5bp_21bp_3"
## [1] "MYBL2_romanov_NA_10bp_mCMV_NA"
## [1] "NR4A1_10bp_10bp_2"
## [1] "STAT1::STAT2_neg_10bp_21bp_2"
## [1] "ATF4_TF-seq_NA_21bp_mCMV_NA"
## [1] "POU5F1_10bp_10bp_3"
## [1] "RUNX2_neg_10bp_10bp_1"
## [1] "RORA_5bp_10bp_1"
## [1] "STAT1::STAT2_10bp_10bp_3"
## [1] "THRB_5bp_21bp_2"
## [1] "STAT1.50_TF-seq_NA_10bp_mCMV_NA"
## [1] "NR1I3_10bp_21bp_2"
## [1] "POU5F1_neg_5bp_10bp_2"
## [1] "THRB_neg_5bp_21bp_3"
## [1] "NFYA_TF-seq_NA_10bp_mCMV_NA"
## [1] "STAT4_TF-seq_NA_21bp_mCMV_NA"
## [1] "SOX9_10bp_10bp_2"
## [1] "FOXO1_neg_5bp_10bp_1"
## [1] "TP53_romanov_NA_21bp_mCMV_NA"
## [1] "MEF2A_5bp_21bp_2"
## [1] "TCF7_5bp_10bp_1"
## [1] "IRF1_TF-seq_NA_21bp_mCMV_NA"
## [1] "NR3C2_neg_5bp_21bp_3"
## [1] "NR1H4::RXRA_5bp_10bp_2"
## [1] "HNF4A_neg_5bp_10bp_1"
## [1] "XBP1_10bp_21bp_2"
## [1] "PGR_neg_5bp_10bp_1"
## [1] "PGR_10bp_10bp_3"
## [1] "TP53_promega_NA_21bp_mCMV_NA"
## [1] "CEBPB_5bp_10bp_1"
## [1] "E2F1_5bp_10bp_2"
## [1] "ONECUT1_neg_5bp_10bp_1"
## [1] "AR_5bp_10bp_1"
## [1] "PGR_neg_5bp_21bp_2"
## [1] "FOXO1_neg_5bp_10bp_3"
## [1] "NR3C2_10bp_21bp_3"
## [1] "NR1I2_neg_5bp_10bp_1"
## [1] "AHR::ARNT_romanov_NA_21bp_mCMV_NA"
## [1] "NR1D1_10bp_21bp_2"
## [1] "NR1I2_neg_5bp_10bp_3"
## [1] "FOXA1_neg_10bp_21bp_2"
## [1] "NRF1_neg_5bp_10bp_3"
## [1] "POU2F1_neg_5bp_21bp_3"
## [1] "CREB1_TF-romanov_NA_21bp_mCMV_NA"
## [1] "NRF1_neg_5bp_10bp_1"
## [1] "SOX2_neg_5bp_10bp_1"
## [1] "AR_10bp_21bp_3"
## [1] "T_neg_10bp_10bp_3"
## [1] "SOX2_neg_10bp_21bp_3"
## [1] "REL_5bp_10bp_2"
## [1] "PPARG::RXRA_5bp_21bp_2"
## [1] "NR2E3_neg_5bp_21bp_1"
## [1] "TFAP2A_neg_5bp_21bp_1"
## [1] "PPARG::RXRA_2_TF-seq_NA_21bp_mCMV_NA"
## [1] "ETS1_5bp_21bp_2"
## [1] "HSF1_neg_5bp_21bp_3"
## [1] "GRHL1_10bp_10bp_2"
## [1] "NR1H2_10bp_10bp_3"
## [1] "THRA_neg_10bp_10bp_1"
## [1] "NFAT5_10bp_10bp_2"
## [1] "HNF1A_10bp_21bp_3"
## [1] "GATA1_neg_10bp_10bp_1"
## [1] "ETS1_5bp_21bp_3"
## [1] "E2F1_neg_10bp_10bp_3"
## [1] "TEAD1_5bp_10bp_2"
## [1] "EGR1_neg_5bp_10bp_2"
## [1] "FOS::JUN_romanov_NA_21bp_mCMV_NA"
## [1] "GATA4_10bp_21bp_3"
## [1] "REL_5bp_21bp_3"
## [1] "AHR::ARNT_5bp_21bp_1"
## [1] "NR2E3_neg_10bp_21bp_2"
## [1] "NR4A2::RXRA_5bp_21bp_2"
## [1] "NR1D1_neg_5bp_10bp_1"
## [1] "E2F1_10bp_10bp_3"
## [1] "NFE2L2_promega_long_NA_10bp_mCMV_NA"
## [1] "NR3C2_5bp_21bp_3"
## [1] "MEF2A_10bp_10bp_1"
## [1] "NFATc1_neg_5bp_21bp_1"
## [1] "NR3C2_neg_5bp_10bp_2"
## [1] "RFX1_10bp_21bp_1"
## [1] "TEAD1_10bp_10bp_1"
## [1] "XBP1_promega_NA_10bp_mCMV_NA"
## [1] "MAF::NFE2_5bp_21bp_3"
## [1] "NR4A1_10bp_21bp_2"
## [1] "NR5A2_5bp_10bp_1"
## [1] "RFX1_10bp_21bp_2"
## [1] "WT1_neg_10bp_10bp_3"
## [1] "PPARG::RXRA_5bp_21bp_3"
## [1] "FOXA1_5bp_10bp_3"
## [1] "ETS1_10bp_10bp_1"
## [1] "NR1D1_5bp_10bp_2"
## [1] "SMAD2::SMAD3::SMAD4_neg_5bp_21bp_2"
## [1] "MAF::NFE2_10bp_10bp_1"
## [1] "POU5F1_neg_5bp_21bp_1"
## [1] "HSF1_neg_10bp_10bp_3"
## [1] "FOSL1_10bp_21bp_3"
## [1] "POU5F1_neg_10bp_21bp_2"
## [1] "RARA:RXRA_5bp_10bp_1"
## [1] "THRB_5bp_10bp_3"
## [1] "FOXO1_neg_10bp_10bp_3"
## [1] "FOSL1_neg_10bp_10bp_1"
## [1] "NR1I3_neg_5bp_21bp_1"
## [1] "SRE_promega_long_NA_10bp_mCMV_NA"
## [1] "RORA_10bp_10bp_2"
## [1] "EGR1_romanov_NA_21bp_mCMV_NA"
## [1] "NR1H2_neg_10bp_10bp_3"
## [1] "AR_neg_5bp_10bp_2"
## [1] "HNF4A_5bp_21bp_3"
## [1] "SMAD2::SMAD3::SMAD4_TF-seq_NA_21bp_mCMV_NA"
## [1] "REL_neg_5bp_21bp_3"
## [1] "RARA:RXRA_neg_5bp_21bp_3"
## [1] "IRF3_TF-seq_NA_10bp_mCMV_NA"
## [1] "NR1H2_5bp_21bp_3"
## [1] "STAT1::STAT2_10bp_10bp_2"
## [1] "MAF::NFE2_neg_5bp_10bp_3"
## [1] "NFKB1_romanov_NA_10bp_mCMV_NA"
## [1] "MEF2A_10bp_21bp_2"
## [1] "EGR1_romanov_NA_10bp_mCMV_NA"
## [1] "NR1I2_neg_5bp_21bp_1"
## [1] "XBP1_5bp_10bp_2"
## [1] "POU2F1_10bp_10bp_1"
## [1] "NR1I2_neg_5bp_10bp_2"
## [1] "EGR1_neg_10bp_21bp_2"
## [1] "STAT1::STAT2_TF-seq_NA_21bp_mCMV_NA"
## [1] "T_neg_10bp_21bp_3"
## [1] "NRF1_10bp_21bp_2"
## [1] "PGR_5bp_21bp_3"
## [1] "STAT1::STAT2_5bp_10bp_2"
## [1] "EGR1_5bp_21bp_3"
## [1] "SOX2_10bp_10bp_1"
## [1] "T_neg_5bp_10bp_3"
## [1] "XBP1_neg_10bp_21bp_2"
## [1] "RUNX2_5bp_10bp_2"
## [1] "HNF1A_neg_10bp_21bp_3"
## [1] "MEF2A_10bp_21bp_3"
## [1] "THRA_5bp_10bp_3"
## [1] "ESR1_neg_5bp_10bp_3"
## [1] "NFE2L2_TF-seq_NA_10bp_mCMV_NA"
## [1] "NRF1_10bp_10bp_1"
## [1] "HNF4A_TF-seq_NA_21bp_mCMV_NA"
## [1] "AR_10bp_10bp_3"
## [1] "MAFA_neg_5bp_10bp_2"
## [1] "VDR::RXRA_neg_10bp_21bp_3"
## [1] "HNF1A_5bp_10bp_3"
## [1] "FOXO1_10bp_10bp_1"
## [1] "NR5A2_10bp_21bp_3"
## [1] "POU5F1::SOX2_10bp_21bp_3"
## [1] "SRF_neg_5bp_21bp_3"
## [1] "PAX6_romanov_NA_21bp_mCMV_NA"
## [1] "TEAD1_10bp_10bp_2"
## [1] "XBP1_5bp_10bp_3"
## [1] "NR4A1_neg_10bp_10bp_1"
## [1] "REL_neg_5bp_21bp_2"
## [1] "REL_5bp_10bp_3"
## [1] "EGR1_5bp_21bp_2"
## [1] "PPARA::RXRA_10bp_21bp_3"
## [1] "AR_5bp_10bp_3"
## [1] "NR1D1_neg_5bp_10bp_2"
## [1] "TCF7_neg_10bp_21bp_3"
## [1] "PPARA::RXRA_5bp_10bp_3"
## [1] "POU2F1_neg_10bp_10bp_3"
## [1] "RUNX2_neg_5bp_21bp_1"
## [1] "SOX2_5bp_21bp_1"
## [1] "SOX9_5bp_10bp_2"
## [1] "FOS::JUN_5bp_21bp_1"
## [1] "NR1D1_5bp_21bp_3"
## [1] "PPARG::RXRA_5bp_10bp_1"
## [1] "GATA1_neg_10bp_10bp_3"
## [1] "NR1I3_5bp_21bp_3"
## [1] "NR3C1_TF-seq_NA_10bp_mCMV_NA"
## [1] "NR1I2_10bp_10bp_2"
## [1] "POU5F1_neg_5bp_10bp_1"
## [1] "NFATc1_10bp_21bp_2"
## [1] "NR3C2_neg_5bp_21bp_2"
## [1] "CEBPB_10bp_10bp_3"
## [1] "XBP1_5bp_21bp_3"
## [1] "T_neg_5bp_21bp_1"
## [1] "GRHL1_5bp_10bp_2"
## [1] "TCF7_promega_NA_21bp_mCMV_NA"
## [1] "NR4A2::RXRA_neg_5bp_10bp_1"
## [1] "NFKB1_promega_NA_21bp_mCMV_NA"
## [1] "SMAD2::SMAD3::SMAD4_neg_5bp_10bp_2"
## [1] "THRA_neg_5bp_10bp_3"
## [1] "ONECUT1_5bp_10bp_1"
## [1] "TCF7_10bp_10bp_3"
## [1] "FOS::JUN_neg_10bp_10bp_1"
## [1] "MEF2A_neg_10bp_10bp_2"
## [1] "MEF2A_neg_5bp_10bp_1"
## [1] "HSF1_promega_NA_10bp_mCMV_NA"
## [1] "EGR1_TF-seq_NA_10bp_mCMV_NA"
## [1] "FOSL1_neg_5bp_21bp_3"
## [1] "RUNX2_5bp_21bp_2"
## [1] "SOX2_10bp_10bp_2"
## [1] "MEF2A_neg_5bp_21bp_2"
## [1] "PGR_neg_10bp_21bp_2"
## [1] "ESR1_10bp_21bp_3"
## [1] "CEBPB_neg_10bp_10bp_2"
## [1] "EGR1_10bp_21bp_3"
## [1] "ESR1_neg_10bp_10bp_2"
## [1] "POU2F1_5bp_21bp_1"
## [1] "NR1H2_neg_10bp_21bp_2"
## [1] "RARA:RXRA_neg_10bp_10bp_3"
## [1] "NFIA_10bp_10bp_2"
## [1] "E2F1_5bp_21bp_3"
## [1] "SMAD2::SMAD3::SMAD4_neg_10bp_21bp_3"
## [1] "HSF1_neg_5bp_21bp_1"
## [1] "SMAD2::SMAD3::SMAD4_5bp_21bp_1"
## [1] "NR1H2_10bp_21bp_3"
## [1] "NFIA_neg_10bp_10bp_2"
## [1] "MYBL2_neg_10bp_21bp_2"
## [1] "EGR1_TF-seq_NA_21bp_mCMV_NA"
## [1] "NR3C1_romanov_NA_10bp_mCMV_NA"
## [1] "NFAT5_10bp_21bp_3"
## [1] "E2F1_10bp_21bp_2"
## [1] "THRB_neg_5bp_10bp_2"
## [1] "FOS::JUN_neg_5bp_21bp_3"
## [1] "HNF4A_10bp_10bp_3"
## [1] "RFX1_neg_5bp_10bp_1"
## [1] "SMAD2::SMAD3::SMAD4_neg_10bp_10bp_3"
## [1] "T_neg_10bp_10bp_1"
## [1] "FOS::JUN_romanov_NA_10bp_mCMV_NA"
## [1] "ETS1_neg_5bp_10bp_2"
## [1] "POU5F1_neg_10bp_10bp_1"
## [1] "NR1H2_5bp_10bp_3"
## [1] "GLI1_romanov_NA_10bp_mCMV_NA"
## [1] "AR_neg_5bp_21bp_1"
## [1] "THRA_neg_10bp_21bp_3"
## [1] "PGR_5bp_10bp_1"
## [1] "NR1D1_10bp_10bp_2"
## [1] "RBPJ_TF-seq_NA_10bp_mCMV_NA"
## [1] "NR1D1_neg_10bp_21bp_2"
## [1] "FOS::JUN_promega_long_NA_10bp_mCMV_NA"
## [1] "STAT6_TF-seq_NA_10bp_mCMV_NA"
## [1] "FOSL1_neg_5bp_21bp_1"
## [1] "NR4A1_neg_10bp_21bp_3"
## [1] "SOX2_neg_10bp_10bp_2"
## [1] "RFX1_neg_5bp_21bp_2"
## [1] "MTF1_neg_10bp_21bp_2"
## [1] "NFIA_10bp_10bp_1"
## [1] "ESR1_neg_10bp_21bp_2"
## [1] "RORA_neg_10bp_21bp_1"
## [1] "NR1D1_10bp_10bp_3"
## [1] "TFAP2A_10bp_21bp_2"
## [1] "NR1I2_neg_5bp_21bp_3"
## [1] "THRB_5bp_21bp_3"
## [1] "HNF4A_10bp_10bp_2"
## [1] "MAF::NFE2_10bp_21bp_2"
## [1] "E2F1_neg_10bp_21bp_3"
## [1] "MEF2A_5bp_10bp_3"
## [1] "RARA:RXRA_neg_10bp_21bp_2"
## [1] "NR4A2::RXRA_neg_5bp_21bp_2"
## [1] "ONECUT1_neg_5bp_21bp_3"
## [1] "RORA_neg_5bp_10bp_2"
## [1] "MTF1_10bp_10bp_1"
## [1] "NR1H2_neg_5bp_21bp_3"
## [1] "NR1I3_5bp_10bp_2"
## [1] "SOX2_neg_5bp_21bp_3"
## [1] "NR3C2_5bp_21bp_1"
## [1] "HSF1_neg_5bp_10bp_1"
## [1] "REL_neg_10bp_10bp_2"
## [1] "SMAD2::SMAD3::SMAD4_promega_long_NA_10bp_mCMV_NA"
## [1] "PGR_5bp_21bp_2"
## [1] "FOXO1_10bp_10bp_2"
## [1] "NFKB1_promega_NA_10bp_mCMV_NA"
## [1] "SRF_neg_5bp_10bp_1"
## [1] "GLI1_TF-seq_NA_21bp_mCMV_NA"
## [1] "GATA1_5bp_21bp_3"
## [1] "NR1H2_neg_5bp_10bp_2"
## [1] "NR2E3_neg_5bp_10bp_3"
## [1] "AHR::ARNT_TF-seq_NA_10bp_mCMV_NA"
## [1] "VDR::RXRA_TF-seq_NA_21bp_mCMV_NA"
## [1] "NR3C2_5bp_10bp_1"
## [1] "THRA_10bp_10bp_3"
## [1] "RORA_10bp_21bp_2"
## [1] "CEBPB_5bp_21bp_3"
## [1] "HSF1_neg_10bp_21bp_3"
## [1] "THRB_neg_5bp_10bp_1"
## [1] "FOSL1_5bp_21bp_3"
## [1] "NR4A2::RXRA_10bp_21bp_2"
## [1] "ETS1_romanov_NA_10bp_mCMV_NA"
## [1] "TFAP2A_romanov_NA_10bp_mCMV_NA"
## [1] "POU2F1_neg_10bp_21bp_3"
## [1] "SOX2_5bp_10bp_3"
## [1] "MTF1_5bp_10bp_2"
## [1] "RARA:RXRA_TF-seq_NA_10bp_mCMV_NA"
## [1] "NR4A1_neg_5bp_10bp_1"
## [1] "SRF_promega_NA_21bp_mCMV_NA"
## [1] "GRHL1_5bp_10bp_3"
## [1] "FOXO1_romanov_NA_21bp_mCMV_NA"
## [1] "RORA_5bp_21bp_3"
## [1] "ETS1_10bp_10bp_2"
## [1] "NR4A1_neg_5bp_21bp_2"
## [1] "POU5F1::SOX2_neg_5bp_21bp_3"
## [1] "THRA_5bp_21bp_1"
## [1] "NFAT5_promega_NA_10bp_mCMV_NA"
## [1] "WT1_5bp_10bp_2"
## [1] "NR3C2_neg_10bp_10bp_3"
## [1] "REL_10bp_10bp_2"
## [1] "GLI1_romanov_NA_21bp_mCMV_NA"
## [1] "PPARG::RXRA_neg_10bp_21bp_2"
## [1] "NR4A1_neg_10bp_10bp_3"
## [1] "RXRA_5bp_21bp_3"
## [1] "FOXO1_romanov_NA_10bp_mCMV_NA"
## [1] "ONECUT1_10bp_21bp_2"
## [1] "NR5A2_5bp_21bp_3"
## [1] "T_neg_5bp_21bp_3"
## [1] "RFX1_5bp_10bp_3"
## [1] "THRA_10bp_21bp_3"
## [1] "SOX2_5bp_21bp_3"
## [1] "RUNX2_neg_5bp_10bp_3"
## [1] "RORA_neg_5bp_21bp_3"
## [1] "RUNX2_neg_5bp_10bp_2"
## [1] "AR_neg_5bp_10bp_1"
## [1] "Myc_romanov_NA_10bp_mCMV_NA"
## [1] "MEF2A_5bp_21bp_3"
## [1] "RARA:RXRA_5bp_10bp_2"
## [1] "RARA:RXRA_neg_10bp_21bp_3"
## [1] "FOXO1_neg_10bp_10bp_1"
## [1] "VDR::RXRA_10bp_21bp_2"
## [1] "ESR1_neg_10bp_21bp_3"
## [1] "VDR::RXRA_neg_5bp_21bp_3"
## [1] "STAT1.49_TF-seq_NA_21bp_minP_NA"
## [1] "GATA3_TF-seq_NA_21bp_minP_NA"
## [1] "TP53_promega_NA_10bp_minP_NA"
## [1] "FOS::JUN_TF-seq_NA_21bp_minP_NA"
## [1] "NFYA_TF-seq_NA_21bp_minP_NA"
## [1] "GATA3_TF-seq_NA_10bp_minP_NA"
## [1] "STAT6_TF-seq_NA_10bp_minP_NA"
## [1] "ATF4_TF-seq_NA_21bp_minP_NA"
## [1] "CEBPB_TF-seq_NA_10bp_minP_NA"
## [1] "SRF_TF-seq_NA_10bp_minP_NA"
## [1] "HNF4A_TF-seq_NA_10bp_minP_NA"
## [1] "TCF7_romanov_NA_21bp_minP_NA"
## [1] "REL_TF-seq_NA_21bp_minP_NA"
## [1] "CREB1_promega_NA_10bp_minP_NA"
## [1] "NR1I3_romanov_NA_10bp_minP_NA"
## [1] "NFE2L2_romanov_NA_21bp_minP_NA"
## [1] "IRF3_promega_NA_21bp_minP_NA"
## [1] "XBP1_promega_NA_10bp_minP_NA"
## [1] "CEBPB_romanov_NA_21bp_minP_NA"
## [1] "CREB1_promega_long_NA_10bp_minP_NA"
## [1] "EGR1_romanov_NA_21bp_minP_NA"
## [1] "FOS::JUN_romanov_NA_21bp_minP_NA"
## [1] "ETS1_romanov_NA_10bp_minP_NA"
## [1] "SRE_promega_long_NA_10bp_minP_NA"
## [1] "ATF6_promega_NA_10bp_minP_NA"
## [1] "Myc_romanov_NA_21bp_minP_NA"
## [1] "ESR1_romanov_NA_10bp_minP_NA"
## [1] "STAT5_TF-seq_NA_10bp_minP_NA"
## [1] "SP1_TF-seq_NA_10bp_minP_NA"
## [1] "SP1_romanov_NA_21bp_minP_NA"
## [1] "STAT3_romanov_NA_10bp_minP_NA"
## [1] "NFKB1_promega_NA_10bp_minP_NA"
## [1] "SRF_promega_NA_10bp_minP_NA"
## [1] "FOS::JUN_romanov_NA_10bp_minP_NA"
## [1] "SP1_TF-seq_NA_21bp_minP_NA"
## [1] "STAT3_TF-seq_NA_21bp_minP_NA"
## [1] "NFKB1_romanov_NA_10bp_minP_NA"
## [1] "STAT1::STAT2_TF-seq_NA_21bp_minP_NA"
## [1] "AHR::ARNT_TF-seq_NA_10bp_minP_NA"
## [1] "STAT1_TF-seq_NA_21bp_minP_NA"
## [1] "RFX1_5bp_21bp_1"
## [1] "POU2F1_romanov_NA_21bp_minP_NA"
## [1] "HIF1A_promega_long_NA_10bp_minP_NA"
## [1] "PPARA::RXRA_romanov_NA_10bp_minP_NA"
## [1] "RORA_TF-seq_NA_10bp_minP_NA"
## [1] "MTF1_neg_5bp_21bp_1"
## [1] "PPARA::RXRA_romanov_NA_21bp_minP_NA"
## [1] "STAT5_promega_NA_10bp_minP_NA"
## [1] "TCF7_promega_long_NA_10bp_minP_NA"
## [1] "XBP1_promega_NA_21bp_minP_NA"
## [1] "ELK1_TF-seq_NA_21bp_minP_NA"
## [1] "GATA1_romanov_NA_10bp_minP_NA"
## [1] "NFIA_romanov_NA_10bp_minP_NA"
## [1] "NR1D1_10bp_21bp_3"
## [1] "SREBF1_TF-seq_NA_21bp_minP_NA"
## [1] "CEBPA_TF-seq_NA_10bp_minP_NA"
## [1] "POU5F1_neg_5bp_21bp_3"
## [1] "TFAP2A_romanov_NA_21bp_minP_NA"
## [1] "EGR1_romanov_NA_10bp_minP_NA"
## [1] "SMAD2::SMAD3::SMAD4_promega_long_NA_10bp_minP_NA"
## [1] "IRF3_romanov_NA_10bp_minP_NA"
## [1] "TFAP2A_romanov_NA_10bp_minP_NA"
## [1] "NFYA_TF-seq_NA_10bp_minP_NA"
## [1] "AHR::ARNT_romanov_NA_21bp_minP_NA"
## [1] "ATF4_TF-seq_NA_10bp_minP_NA"
## [1] "Myc_romanov_NA_10bp_minP_NA"
## [1] "FOS::JUN_promega_long_NA_10bp_minP_NA"
## [1] "CREL_TF-seq_NA_21bp_minP_NA"
## [1] "THRB_neg_10bp_21bp_1"
## [1] "GLI1_romanov_NA_21bp_minP_NA"
## [1] "NFE2_romanov_NA_21bp_minP_NA"
## [1] "SRE_promega_NA_10bp_minP_NA"
## [1] "STAT1::STAT2_promega_NA_10bp_minP_NA"
## [1] "TP53_promega_long_NA_10bp_minP_NA"
## [1] "TCF7_promega_NA_10bp_minP_NA"
## [1] "NFE2_romanov_NA_10bp_minP_NA"
## [1] "NFE2L2_TF-seq_NA_10bp_minP_NA"
## [1] "STAT4_TF-seq_NA_21bp_minP_NA"
## [1] "RORA_TF-seq_NA_21bp_minP_NA"
## [1] "NR3C2_romanov_NA_10bp_minP_NA"
## [1] "TFEB_TF-seq_NA_10bp_minP_NA"
## [1] "STAT1.50_TF-seq_NA_10bp_minP_NA"
## [1] "CEBPB_romanov_NA_10bp_minP_NA"
## [1] "XBP1_romanov_NA_21bp_minP_NA"
## [1] "FOS::JUN_promega_NA_21bp_minP_NA"
## [1] "STAT5_TF-seq_NA_21bp_minP_NA"
## [1] "SMAD2::SMAD3::SMAD4_TF-seq_NA_21bp_minP_NA"
## [1] "CREB1_TF-romanov_NA_21bp_minP_NA"
## [1] "NR1H2_romanov_NA_21bp_minP_NA"
## [1] "GLI1_TF-seq_NA_10bp_minP_NA"
## [1] "NFE2L2_TF-seq_NA_21bp_minP_NA"
## [1] "FOXO1_romanov_NA_10bp_minP_NA"
## [1] "ETS1_romanov_NA_21bp_minP_NA"
## [1] "ONECUT1_romanov_NA_21bp_minP_NA"
## [1] "TP53_promega_NA_21bp_minP_NA"
## [1] "VDR::RXRA_TF-seq_NA_10bp_minP_NA"
## [1] "CEBPA_TF-seq_NA_21bp_minP_NA"
## [1] "STAT3_TF-seq_NA_10bp_minP_NA"
## [1] "MAF::NFE2_TF-seq_NA_10bp_minP_NA"
## [1] "NR1I3_romanov_NA_21bp_minP_NA"
## [1] "NR1H2_romanov_NA_10bp_minP_NA"
## [1] "XBP1_TF-seq_NA_21bp_minP_NA"
## [1] "TCF7_TF-seq_NA_10bp_minP_NA"
## [1] "SREBP_romanov_NA_21bp_minP_NA"
## [1] "THRB_5bp_21bp_1"
## [1] "TCF7_TF-seq_NA_21bp_minP_NA"
## [1] "PPARG::PPARG_TF-seq_NA_10bp_minP_NA"
## [1] "E2F1_romanov_NA_10bp_minP_NA"
## [1] "NR3C1_TF-seq_NA_10bp_minP_NA"
## [1] "ELK1_romanov_NA_21bp_minP_NA"
## [1] "STAT4_TF-seq_NA_10bp_minP_NA"
## [1] "XBP1_promega_long_NA_10bp_minP_NA"
## [1] "STAT1::STAT2_promega_NA_21bp_minP_NA"
## [1] "TCF7_promega_NA_21bp_minP_NA"
## [1] "ATF6_TF-seq_NA_10bp_minP_NA"
## [1] "ELK1_romanov_NA_10bp_minP_NA"
## [1] "SP1_romanov_NA_10bp_minP_NA"
## [1] "XBP1_romanov_NA_10bp_minP_NA"
## [1] "STAT3_promega_NA_21bp_minP_NA"
## [1] "EGR1_TF-seq_NA_10bp_minP_NA"
## [1] "NFIA_romanov_NA_21bp_minP_NA"
## [1] "CREB1_TF-seq_NA_21bp_minP_NA"
## [1] "AHR::ARNT_romanov_NA_10bp_minP_NA"
## [1] "FOXO1_romanov_NA_21bp_minP_NA"
## [1] "FOS::JUN_promega_NA_10bp_minP_NA"
## [1] "NR1H4::RXRA_TF-seq_NA_21bp_minP_NA"
## [1] "MYBL2_romanov_NA_21bp_minP_NA"
## [1] "HIF1A_promega_NA_21bp_minP_NA"
## [1] "TP53_romanov_NA_10bp_minP_NA"
## [1] "PPARG::PPARG_TF-seq_NA_21bp_minP_NA"
## [1] "STAT1.49_TF-seq_NA_10bp_minP_NA"
## [1] "STAT1::STAT2_TF-seq_NA_10bp_minP_NA"
## [1] "NR3C2_romanov_NA_21bp_minP_NA"
## [1] "ONECUT1_romanov_NA_10bp_minP_NA"
## [1] "NR1H2_TF-seq_NA_21bp_minP_NA"
## [1] "PPARG::RXRA_2_TF-seq_NA_21bp_minP_NA"
## [1] "NR3C1_TF-seq_NA_21bp_minP_NA"
## [1] "ATF2_TF-seq_NA_10bp_minP_NA"
## [1] "MAF::NFE2_TF-seq_NA_21bp_minP_NA"
## [1] "PAX6_romanov_NA_21bp_minP_NA"
## [1] "NFKB1_promega_NA_21bp_minP_NA"
## [1] "STAT1_promega_long_NA_10bp_minP_NA"
## [1] "ATF6_promega_NA_21bp_minP_NA"
## [1] "NFAT5_promega_NA_10bp_minP_NA"
## [1] "RARA:RXRA_TF-seq_NA_10bp_minP_NA"
## [1] "NFE2L2_promega_NA_21bp_minP_NA"
## [1] "RARA_TF-seq_NA_10bp_minP_NA"
## [1] "NR1H4::RXRA_TF-seq_NA_10bp_minP_NA"
## [1] "CREL_TF-seq_NA_10bp_minP_NA"
## [1] "SRE_promega_NA_21bp_minP_NA"
## [1] "AHR::ARNT_TF-seq_NA_21bp_minP_NA"
## [1] "CLOCK_TF-seq_NA_21bp_minP_NA"
## [1] "MTF1_promega_NA_21bp_minP_NA"
## [1] "NFKB1_TF-seq_NA_21bp_minP_NA"
## [1] "E2F1_romanov_NA_21bp_minP_NA"
## [1] "ELK1_TF-seq_NA_10bp_minP_NA"
## [1] "NFKB1_romanov_NA_21bp_minP_NA"
## [1] "IRF3_romanov_NA_21bp_minP_NA"
## [1] "NFKB1_TF-seq_NA_10bp_minP_NA"
## [1] "RUNX2_TF-seq_NA_10bp_minP_NA"
## [1] "STAT5_promega_long_NA_10bp_minP_NA"
## [1] "RARA:RXRA_TF-seq_NA_21bp_minP_NA"
## [1] "EGR1_TF-seq_NA_21bp_minP_NA"
## [1] "FOXA1_romanov_NA_10bp_minP_NA"
## [1] "CEBPB_TF-seq_NA_21bp_minP_NA"
## [1] "RARA_TF-seq_NA_21bp_minP_NA"
## [1] "HSF1_romanov_NA_21bp_minP_NA"
## [1] "NFE2L2_promega_long_NA_10bp_minP_NA"
## [1] "SREBP_romanov_NA_10bp_minP_NA"
## [1] "NFE2L2_promega_NA_10bp_minP_NA"
## [1] "NR3C2_5bp_21bp_2"
## [1] "SRF_promega_long_NA_10bp_minP_NA"
## [1] "STAT3_promega_NA_10bp_minP_NA"
## [1] "STAT5_promega_NA_21bp_minP_NA"
## [1] "FOS::JUN_TF-seq_NA_10bp_minP_NA"
## [1] "NR1H2_TF-seq_NA_10bp_minP_NA"
## [1] "TCF7_romanov_NA_10bp_minP_NA"
## [1] "HIF1A_promega_NA_10bp_minP_NA"
## [1] "ATF6_promega_long_NA_10bp_minP_NA"
## [1] "CREB1_TF-romanov_NA_10bp_minP_NA"
## [1] "IRF3_TF-seq_NA_10bp_minP_NA"
## [1] "IRF3_TF-seq_NA_21bp_minP_NA"
## [1] "STAT3_romanov_NA_21bp_minP_NA"
## [1] "MYBL2_romanov_NA_10bp_minP_NA"
## [1] "NFAT5_promega_long_NA_10bp_minP_NA"
## [1] "IRF1_TF-seq_NA_10bp_minP_NA"
## [1] "REL_TF-seq_NA_10bp_minP_NA"
## [1] "POU2F1_romanov_NA_10bp_minP_NA"
## [1] "RBPJ_TF-seq_NA_10bp_minP_NA"
## [1] "TEAD1_TF-seq_NA_10bp_minP_NA"
## [1] "CREB1_promega_NA_21bp_minP_NA"
## [1] "IRF1_TF-seq_NA_21bp_minP_NA"
## [1] "SRF_TF-seq_NA_21bp_minP_NA"
## [1] "STAT1_TF-seq_NA_10bp_minP_NA"
## [1] "ATF6_TF-seq_NA_21bp_minP_NA"
## [1] "NR3C1_romanov_NA_10bp_minP_NA"
## [1] "SRF_promega_NA_21bp_minP_NA"
## [1] "ESR1_romanov_NA_21bp_minP_NA"
## [1] "SMAD2::SMAD3::SMAD4_romanov_NA_10bp_minP_NA"
## [1] "GLI1_TF-seq_NA_21bp_minP_NA"
## [1] "SREBF1_TF-seq_NA_10bp_minP_NA"
## [1] "STAT3_promega_long_NA_10bp_minP_NA"
## [1] "THRB_10bp_21bp_3"
## [1] "ATF2_TF-seq_NA_21bp_minP_NA"
## [1] "SMAD2::SMAD3::SMAD4_promega_NA_21bp_minP_NA"
## [1] "RBPJ_TF-seq_NA_21bp_minP_NA"
## [1] "GATA1_romanov_NA_21bp_minP_NA"
## [1] "NR3C1_romanov_NA_21bp_minP_NA"
## [1] "HSF1_promega_long_NA_10bp_minP_NA"
## [1] "XBP1_TF-seq_NA_10bp_minP_NA"
## [1] "NFKB1_promega_long_NA_10bp_minP_NA"
## [1] "CREB1_TF-seq_NA_10bp_minP_NA"
## [1] "PPARG::RXRA_2_TF-seq_NA_10bp_minP_NA"
## [1] "SOX2_romanov_NA_10bp_minP_NA"
## [1] "PAX6_romanov_NA_10bp_minP_NA"
## [1] "VDR::RXRA_TF-seq_NA_21bp_minP_NA"
## [1] "TP53_romanov_NA_21bp_minP_NA"
## [1] "TFEB_TF-seq_NA_21bp_minP_NA"
## [1] "HNF4A_TF-seq_NA_21bp_minP_NA"
## [1] "MTF1_promega_NA_10bp_minP_NA"
## [1] "FOXO1_TF-seq_NA_10bp_minP_NA"
## [1] "NFE2L2_romanov_NA_10bp_minP_NA"
## [1] "STAT1.50_TF-seq_NA_21bp_minP_NA"
## [1] "SMAD2::SMAD3::SMAD4_TF-seq_NA_10bp_minP_NA"
## [1] "STAT6_TF-seq_NA_21bp_minP_NA"
## [1] "CLOCK_TF-seq_NA_10bp_minP_NA"
## [1] "RORA_neg_10bp_21bp_3"
## [1] "FOXA1_romanov_NA_21bp_minP_NA"
## [1] "HSF1_promega_NA_21bp_minP_NA"
## [1] "HSF1_promega_NA_10bp_minP_NA"
## [1] "FOXO1_TF-seq_NA_21bp_minP_NA"
## [1] "GLI1_romanov_NA_10bp_minP_NA"
## [1] "IRF3_promega_NA_10bp_minP_NA"
## [1] "RORA_neg_10bp_10bp_3"
## [1] "NFAT5_promega_NA_21bp_mCMV_NA"
## [1] "ATF2_TF-seq_NA_21bp_mCMV_NA"
## [1] "FOXO1_TF-seq_NA_21bp_mCMV_NA"
## [1] "SOX2_10bp_21bp_2"
## [1] "RUNX2_TF-seq_NA_21bp_minP_NA"
## [1] "PPARG::RXRA_TF-seq_NA_10bp_minP_NA"
## [1] "SOX2_romanov_NA_21bp_minP_NA"
## [1] "NFAT5_promega_NA_21bp_minP_NA"
## [1] "SMAD2::SMAD3::SMAD4_promega_NA_10bp_minP_NA"
## [1] "TEAD1_TF-seq_NA_21bp_minP_NA"
## [1] "HSF1_romanov_NA_10bp_minP_NA"
## [1] "PPARG::RXRA_TF-seq_NA_21bp_minP_NA"
## [1] "SMAD2::SMAD3::SMAD4_romanov_NA_21bp_minP_NA"
pval_df <- data.frame(bind_rows(pval_list))
rownames(pval_df) <- names(pval_list)
pval_df <- pval_df %>%
  rownames_to_column("reporter_id2") %>%
  pivot_longer(-reporter_id2, names_to = "id", values_to = "pval") %>%
  mutate(id = gsub("1.2", "1+2", id)) %>%
  na.omit()

bc_df_cDNA_filt <- merge(bc_df_cDNA_filt, pval_df, by = c("reporter_id2", "id"), all = T)
bc_df_cDNA_filt <- bc_df_cDNA_filt[!is.na(bc_df_cDNA_filt$sample_id),]

bc_df_cDNA_filt <- bc_df_cDNA_filt %>%
  mutate(pval_adj = p.adjust(p = pval))

## Compute activity relative to NFYA reporter
bc_df_cDNA_filt_nfya <- bc_df_cDNA_filt %>%
  dplyr::select(sample_id, activity, reporter_id, tf, promoter) %>%
  filter(str_detect(tf, "NFYA"), promoter == "minP") %>%
  unique() %>%
  mutate(activity = ave(activity, sample_id, FUN = function(x) mean(x))) %>%
  dplyr::select(-reporter_id) %>%
  unique() %>%
  dplyr::select("nfya_activity" = activity, sample_id) %>%
  unique()

bc_df_cDNA_filt <- merge(bc_df_cDNA_filt, bc_df_cDNA_filt_nfya, by = "sample_id")
bc_df_cDNA_filt <- bc_df_cDNA_filt %>%
  mutate(nfya_activity = activity / nfya_activity)

# Compute mean of technical replicates
bc_df_cDNA_filt$mean_activity_sample_minP <- ave(bc_df_cDNA_filt$minP_activity, bc_df_cDNA_filt$reporter_id,
                                bc_df_cDNA_filt$sample_id, FUN =
                                  function(x) mean(x, na.rm = T))

bc_df_cDNA_filt$mean_activity_sample_nfya <- ave(bc_df_cDNA_filt$nfya_activity, bc_df_cDNA_filt$reporter_id,
                                bc_df_cDNA_filt$sample_id, FUN =
                                  function(x) mean(x, na.rm = T))
bc_df_cDNA_filt$mean_activity_sample <- ave(bc_df_cDNA_filt$activity, bc_df_cDNA_filt$reporter_id,
                                bc_df_cDNA_filt$sample_id, FUN =
                                  function(x) mean(x, na.rm = T))


# Compute activity relative to mutated motif
bc_df_cDNA_filt_mutated <- bc_df_cDNA_filt %>%
  filter(neg_ctrls == "Yes") %>%
  dplyr::select(reporter_id, 'mutated_activity' = mean_activity_sample, sample_id) %>%
  unique() %>%
  mutate(reporter_id = gsub("_neg", "", reporter_id)) %>%
  filter(str_detect(reporter_id, "MAFA_", negate = T), str_detect(reporter_id, "NR2E3_", negate = T), str_detect(reporter_id, "^T_", negate = T))

bc_df_cDNA_filt <- merge(bc_df_cDNA_filt, bc_df_cDNA_filt_mutated, by = c("reporter_id", "sample_id"), all = T)
bc_df_cDNA_filt <- bc_df_cDNA_filt[!is.na(bc_df_cDNA_filt$barcode),]
bc_df_cDNA_filt <- bc_df_cDNA_filt %>%
  mutate(mean_activity_sample_neg = mean_activity / mutated_activity)

## Statistical significance of reporters vs negative control
bc_df_cDNA_filt <- bc_df_cDNA_filt %>%
  mutate(reporter_id2 = gsub("_neg", "", reporter_id))

pval_list <- list()
for (i in unique(bc_df_cDNA_filt$reporter_id2)) {
  print(i)
  test_x <- bc_df_cDNA_filt[bc_df_cDNA_filt$reporter_id2 == i,]
  ids <- intersect(unique(bc_df_cDNA_filt$id[bc_df_cDNA_filt$reporter_id2 == i & bc_df_cDNA_filt$neg_ctrls == "Yes"]),
                     unique(bc_df_cDNA_filt$id[bc_df_cDNA_filt$reporter_id2 == i & bc_df_cDNA_filt$neg_ctrls == "No"]))
    pval_list[[i]] <- lapply(ids, function(x) t.test(test_x$activity[test_x$id == x & test_x$neg_ctrls == "No"], 
                                                   test_x$activity[test_x$id == x & test_x$neg_ctrls == "Yes"])$p.value)
    names(pval_list[[i]]) <- ids
}
## [1] "AHR::ARNT_10bp_10bp_mCMV_1"
## [1] "AHR::ARNT_10bp_10bp_mCMV_2"
## [1] "AHR::ARNT_10bp_10bp_mCMV_3"
## [1] "AHR::ARNT_10bp_10bp_minP_1"
## [1] "AHR::ARNT_10bp_10bp_minP_2"
## [1] "AHR::ARNT_10bp_10bp_minP_3"
## [1] "AHR::ARNT_10bp_21bp_Random_1"
## [1] "AHR::ARNT_10bp_21bp_mCMV_1"
## [1] "AHR::ARNT_10bp_21bp_mCMV_2"
## [1] "AHR::ARNT_10bp_21bp_mCMV_3"
## [1] "AHR::ARNT_10bp_21bp_minP_1"
## [1] "AHR::ARNT_10bp_21bp_minP_2"
## [1] "AHR::ARNT_10bp_21bp_minP_3"
## [1] "AHR::ARNT_5bp_10bp_mCMV_1"
## [1] "AHR::ARNT_5bp_10bp_mCMV_2"
## [1] "AHR::ARNT_5bp_10bp_mCMV_3"
## [1] "AHR::ARNT_5bp_10bp_minP_1"
## [1] "AHR::ARNT_5bp_10bp_minP_2"
## [1] "AHR::ARNT_5bp_10bp_minP_3"
## [1] "AHR::ARNT_5bp_21bp_mCMV_1"
## [1] "AHR::ARNT_5bp_21bp_mCMV_2"
## [1] "AHR::ARNT_5bp_21bp_mCMV_3"
## [1] "AHR::ARNT_5bp_21bp_minP_1"
## [1] "AHR::ARNT_5bp_21bp_minP_2"
## [1] "AHR::ARNT_5bp_21bp_minP_3"
## [1] "AHR::ARNT_TF-seq_NA_10bp_mCMV_NA"
## [1] "AHR::ARNT_TF-seq_NA_10bp_minP_NA"
## [1] "AHR::ARNT_TF-seq_NA_21bp_mCMV_NA"
## [1] "AHR::ARNT_TF-seq_NA_21bp_minP_NA"
## [1] "AHR::ARNT_romanov_NA_10bp_mCMV_NA"
## [1] "AHR::ARNT_romanov_NA_10bp_minP_NA"
## [1] "AHR::ARNT_romanov_NA_21bp_mCMV_NA"
## [1] "AHR::ARNT_romanov_NA_21bp_minP_NA"
## [1] "AR_10bp_10bp_mCMV_1"
## [1] "AR_10bp_10bp_mCMV_2"
## [1] "AR_10bp_10bp_mCMV_3"
## [1] "AR_10bp_10bp_minP_1"
## [1] "AR_10bp_10bp_minP_2"
## [1] "AR_10bp_10bp_minP_3"
## [1] "AR_10bp_21bp_Random_1"
## [1] "AR_10bp_21bp_mCMV_1"
## [1] "AR_10bp_21bp_mCMV_2"
## [1] "AR_10bp_21bp_mCMV_3"
## [1] "AR_10bp_21bp_minP_1"
## [1] "AR_10bp_21bp_minP_2"
## [1] "AR_10bp_21bp_minP_3"
## [1] "AR_5bp_10bp_mCMV_1"
## [1] "AR_5bp_10bp_mCMV_2"
## [1] "AR_5bp_10bp_mCMV_3"
## [1] "AR_5bp_10bp_minP_1"
## [1] "AR_5bp_10bp_minP_2"
## [1] "AR_5bp_10bp_minP_3"
## [1] "AR_5bp_21bp_mCMV_1"
## [1] "AR_5bp_21bp_mCMV_2"
## [1] "AR_5bp_21bp_mCMV_3"
## [1] "AR_5bp_21bp_minP_1"
## [1] "AR_5bp_21bp_minP_2"
## [1] "AR_5bp_21bp_minP_3"
## [1] "ATF2_TF-seq_NA_10bp_mCMV_NA"
## [1] "ATF2_TF-seq_NA_10bp_minP_NA"
## [1] "ATF2_TF-seq_NA_21bp_mCMV_NA"
## [1] "ATF2_TF-seq_NA_21bp_minP_NA"
## [1] "ATF4_TF-seq_NA_10bp_mCMV_NA"
## [1] "ATF4_TF-seq_NA_10bp_minP_NA"
## [1] "ATF4_TF-seq_NA_21bp_mCMV_NA"
## [1] "ATF4_TF-seq_NA_21bp_minP_NA"
## [1] "ATF6_TF-seq_NA_10bp_mCMV_NA"
## [1] "ATF6_TF-seq_NA_10bp_minP_NA"
## [1] "ATF6_TF-seq_NA_21bp_mCMV_NA"
## [1] "ATF6_TF-seq_NA_21bp_minP_NA"
## [1] "ATF6_promega_NA_10bp_mCMV_NA"
## [1] "ATF6_promega_NA_10bp_minP_NA"
## [1] "ATF6_promega_NA_21bp_mCMV_NA"
## [1] "ATF6_promega_NA_21bp_minP_NA"
## [1] "ATF6_promega_long_NA_10bp_mCMV_NA"
## [1] "ATF6_promega_long_NA_10bp_minP_NA"
## [1] "CEBPA_TF-seq_NA_10bp_mCMV_NA"
## [1] "CEBPA_TF-seq_NA_10bp_minP_NA"
## [1] "CEBPA_TF-seq_NA_21bp_mCMV_NA"
## [1] "CEBPA_TF-seq_NA_21bp_minP_NA"
## [1] "CEBPB_10bp_10bp_mCMV_1"
## [1] "CEBPB_10bp_10bp_mCMV_2"
## [1] "CEBPB_10bp_10bp_mCMV_3"
## [1] "CEBPB_10bp_10bp_minP_1"
## [1] "CEBPB_10bp_10bp_minP_2"
## [1] "CEBPB_10bp_10bp_minP_3"
## [1] "CEBPB_10bp_21bp_Random_1"
## [1] "CEBPB_10bp_21bp_mCMV_1"
## [1] "CEBPB_10bp_21bp_mCMV_2"
## [1] "CEBPB_10bp_21bp_mCMV_3"
## [1] "CEBPB_10bp_21bp_minP_1"
## [1] "CEBPB_10bp_21bp_minP_2"
## [1] "CEBPB_10bp_21bp_minP_3"
## [1] "CEBPB_5bp_10bp_mCMV_1"
## [1] "CEBPB_5bp_10bp_mCMV_2"
## [1] "CEBPB_5bp_10bp_mCMV_3"
## [1] "CEBPB_5bp_10bp_minP_1"
## [1] "CEBPB_5bp_10bp_minP_2"
## [1] "CEBPB_5bp_10bp_minP_3"
## [1] "CEBPB_5bp_21bp_mCMV_1"
## [1] "CEBPB_5bp_21bp_mCMV_2"
## [1] "CEBPB_5bp_21bp_mCMV_3"
## [1] "CEBPB_5bp_21bp_minP_1"
## [1] "CEBPB_5bp_21bp_minP_2"
## [1] "CEBPB_5bp_21bp_minP_3"
## [1] "CEBPB_TF-seq_NA_10bp_mCMV_NA"
## [1] "CEBPB_TF-seq_NA_10bp_minP_NA"
## [1] "CEBPB_TF-seq_NA_21bp_mCMV_NA"
## [1] "CEBPB_TF-seq_NA_21bp_minP_NA"
## [1] "CEBPB_romanov_NA_10bp_mCMV_NA"
## [1] "CEBPB_romanov_NA_10bp_minP_NA"
## [1] "CEBPB_romanov_NA_21bp_mCMV_NA"
## [1] "CEBPB_romanov_NA_21bp_minP_NA"
## [1] "CLOCK_TF-seq_NA_10bp_mCMV_NA"
## [1] "CLOCK_TF-seq_NA_10bp_minP_NA"
## [1] "CLOCK_TF-seq_NA_21bp_mCMV_NA"
## [1] "CLOCK_TF-seq_NA_21bp_minP_NA"
## [1] "CREB1_10bp_10bp_hBGm_1"
## [1] "CREB1_10bp_10bp_hBGm_2"
## [1] "CREB1_10bp_10bp_hBGm_3"
## [1] "CREB1_10bp_10bp_mCMV_1"
## [1] "CREB1_10bp_10bp_mCMV_2"
## [1] "CREB1_10bp_10bp_mCMV_3"
## [1] "CREB1_10bp_10bp_minP_1"
## [1] "CREB1_10bp_10bp_minP_2"
## [1] "CREB1_10bp_10bp_minP_3"
## [1] "CREB1_10bp_21bp_Random_1"
## [1] "CREB1_10bp_21bp_hBGm_1"
## [1] "CREB1_10bp_21bp_hBGm_2"
## [1] "CREB1_10bp_21bp_hBGm_3"
## [1] "CREB1_10bp_21bp_mCMV_1"
## [1] "CREB1_10bp_21bp_mCMV_2"
## [1] "CREB1_10bp_21bp_mCMV_3"
## [1] "CREB1_10bp_21bp_minP_1"
## [1] "CREB1_10bp_21bp_minP_2"
## [1] "CREB1_10bp_21bp_minP_3"
## [1] "CREB1_5bp_10bp_hBGm_1"
## [1] "CREB1_5bp_10bp_hBGm_2"
## [1] "CREB1_5bp_10bp_hBGm_3"
## [1] "CREB1_5bp_10bp_mCMV_1"
## [1] "CREB1_5bp_10bp_mCMV_2"
## [1] "CREB1_5bp_10bp_mCMV_3"
## [1] "CREB1_5bp_10bp_minP_1"
## [1] "CREB1_5bp_10bp_minP_2"
## [1] "CREB1_5bp_10bp_minP_3"
## [1] "CREB1_5bp_21bp_hBGm_1"
## [1] "CREB1_5bp_21bp_hBGm_2"
## [1] "CREB1_5bp_21bp_hBGm_3"
## [1] "CREB1_5bp_21bp_mCMV_1"
## [1] "CREB1_5bp_21bp_mCMV_2"
## [1] "CREB1_5bp_21bp_mCMV_3"
## [1] "CREB1_5bp_21bp_minP_1"
## [1] "CREB1_5bp_21bp_minP_2"
## [1] "CREB1_5bp_21bp_minP_3"
## [1] "CREB1_TF-romanov_NA_10bp_mCMV_NA"
## [1] "CREB1_TF-romanov_NA_10bp_minP_NA"
## [1] "CREB1_TF-romanov_NA_21bp_mCMV_NA"
## [1] "CREB1_TF-romanov_NA_21bp_minP_NA"
## [1] "CREB1_TF-seq_NA_10bp_mCMV_NA"
## [1] "CREB1_TF-seq_NA_10bp_minP_NA"
## [1] "CREB1_TF-seq_NA_21bp_mCMV_NA"
## [1] "CREB1_TF-seq_NA_21bp_minP_NA"
## [1] "CREB1_promega_NA_10bp_mCMV_NA"
## [1] "CREB1_promega_NA_10bp_minP_NA"
## [1] "CREB1_promega_NA_21bp_mCMV_NA"
## [1] "CREB1_promega_NA_21bp_minP_NA"
## [1] "CREB1_promega_long_NA_10bp_mCMV_NA"
## [1] "CREB1_promega_long_NA_10bp_minP_NA"
## [1] "CREL_TF-seq_NA_10bp_mCMV_NA"
## [1] "CREL_TF-seq_NA_10bp_minP_NA"
## [1] "CREL_TF-seq_NA_21bp_mCMV_NA"
## [1] "CREL_TF-seq_NA_21bp_minP_NA"
## [1] "E2F1_10bp_10bp_mCMV_1"
## [1] "E2F1_10bp_10bp_mCMV_2"
## [1] "E2F1_10bp_10bp_mCMV_3"
## [1] "E2F1_10bp_10bp_minP_1"
## [1] "E2F1_10bp_10bp_minP_2"
## [1] "E2F1_10bp_10bp_minP_3"
## [1] "E2F1_10bp_21bp_Random_1"
## [1] "E2F1_10bp_21bp_mCMV_1"
## [1] "E2F1_10bp_21bp_mCMV_2"
## [1] "E2F1_10bp_21bp_mCMV_3"
## [1] "E2F1_10bp_21bp_minP_1"
## [1] "E2F1_10bp_21bp_minP_2"
## [1] "E2F1_10bp_21bp_minP_3"
## [1] "E2F1_5bp_10bp_mCMV_1"
## [1] "E2F1_5bp_10bp_mCMV_2"
## [1] "E2F1_5bp_10bp_mCMV_3"
## [1] "E2F1_5bp_10bp_minP_1"
## [1] "E2F1_5bp_10bp_minP_2"
## [1] "E2F1_5bp_10bp_minP_3"
## [1] "E2F1_5bp_21bp_mCMV_1"
## [1] "E2F1_5bp_21bp_mCMV_2"
## [1] "E2F1_5bp_21bp_mCMV_3"
## [1] "E2F1_5bp_21bp_minP_1"
## [1] "E2F1_5bp_21bp_minP_2"
## [1] "E2F1_5bp_21bp_minP_3"
## [1] "E2F1_romanov_NA_10bp_mCMV_NA"
## [1] "E2F1_romanov_NA_10bp_minP_NA"
## [1] "E2F1_romanov_NA_21bp_mCMV_NA"
## [1] "E2F1_romanov_NA_21bp_minP_NA"
## [1] "EGR1_10bp_10bp_mCMV_1"
## [1] "EGR1_10bp_10bp_mCMV_2"
## [1] "EGR1_10bp_10bp_mCMV_3"
## [1] "EGR1_10bp_10bp_minP_1"
## [1] "EGR1_10bp_10bp_minP_2"
## [1] "EGR1_10bp_10bp_minP_3"
## [1] "EGR1_10bp_21bp_Random_1"
## [1] "EGR1_10bp_21bp_mCMV_1"
## [1] "EGR1_10bp_21bp_mCMV_2"
## [1] "EGR1_10bp_21bp_mCMV_3"
## [1] "EGR1_10bp_21bp_minP_1"
## [1] "EGR1_10bp_21bp_minP_2"
## [1] "EGR1_10bp_21bp_minP_3"
## [1] "EGR1_5bp_10bp_mCMV_1"
## [1] "EGR1_5bp_10bp_mCMV_2"
## [1] "EGR1_5bp_10bp_mCMV_3"
## [1] "EGR1_5bp_10bp_minP_1"
## [1] "EGR1_5bp_10bp_minP_2"
## [1] "EGR1_5bp_10bp_minP_3"
## [1] "EGR1_5bp_21bp_mCMV_1"
## [1] "EGR1_5bp_21bp_mCMV_2"
## [1] "EGR1_5bp_21bp_mCMV_3"
## [1] "EGR1_5bp_21bp_minP_1"
## [1] "EGR1_5bp_21bp_minP_2"
## [1] "EGR1_5bp_21bp_minP_3"
## [1] "EGR1_TF-seq_NA_10bp_mCMV_NA"
## [1] "EGR1_TF-seq_NA_10bp_minP_NA"
## [1] "EGR1_TF-seq_NA_21bp_mCMV_NA"
## [1] "EGR1_TF-seq_NA_21bp_minP_NA"
## [1] "EGR1_romanov_NA_10bp_mCMV_NA"
## [1] "EGR1_romanov_NA_10bp_minP_NA"
## [1] "EGR1_romanov_NA_21bp_mCMV_NA"
## [1] "EGR1_romanov_NA_21bp_minP_NA"
## [1] "ELK1_10bp_10bp_hBGm_1"
## [1] "ELK1_10bp_10bp_hBGm_2"
## [1] "ELK1_10bp_10bp_hBGm_3"
## [1] "ELK1_10bp_10bp_mCMV_1"
## [1] "ELK1_10bp_10bp_mCMV_2"
## [1] "ELK1_10bp_10bp_mCMV_3"
## [1] "ELK1_10bp_10bp_minP_1"
## [1] "ELK1_10bp_10bp_minP_2"
## [1] "ELK1_10bp_10bp_minP_3"
## [1] "ELK1_10bp_21bp_Random_1"
## [1] "ELK1_10bp_21bp_hBGm_1"
## [1] "ELK1_10bp_21bp_hBGm_2"
## [1] "ELK1_10bp_21bp_hBGm_3"
## [1] "ELK1_10bp_21bp_mCMV_1"
## [1] "ELK1_10bp_21bp_mCMV_2"
## [1] "ELK1_10bp_21bp_mCMV_3"
## [1] "ELK1_10bp_21bp_minP_1"
## [1] "ELK1_10bp_21bp_minP_2"
## [1] "ELK1_10bp_21bp_minP_3"
## [1] "ELK1_5bp_10bp_hBGm_1"
## [1] "ELK1_5bp_10bp_hBGm_2"
## [1] "ELK1_5bp_10bp_hBGm_3"
## [1] "ELK1_5bp_10bp_mCMV_1"
## [1] "ELK1_5bp_10bp_mCMV_2"
## [1] "ELK1_5bp_10bp_mCMV_3"
## [1] "ELK1_5bp_10bp_minP_1"
## [1] "ELK1_5bp_10bp_minP_2"
## [1] "ELK1_5bp_10bp_minP_3"
## [1] "ELK1_5bp_21bp_hBGm_1"
## [1] "ELK1_5bp_21bp_hBGm_2"
## [1] "ELK1_5bp_21bp_hBGm_3"
## [1] "ELK1_5bp_21bp_mCMV_1"
## [1] "ELK1_5bp_21bp_mCMV_2"
## [1] "ELK1_5bp_21bp_mCMV_3"
## [1] "ELK1_5bp_21bp_minP_1"
## [1] "ELK1_5bp_21bp_minP_2"
## [1] "ELK1_5bp_21bp_minP_3"
## [1] "ELK1_TF-seq_NA_10bp_mCMV_NA"
## [1] "ELK1_TF-seq_NA_10bp_minP_NA"
## [1] "ELK1_TF-seq_NA_21bp_mCMV_NA"
## [1] "ELK1_TF-seq_NA_21bp_minP_NA"
## [1] "ELK1_romanov_NA_10bp_mCMV_NA"
## [1] "ELK1_romanov_NA_10bp_minP_NA"
## [1] "ELK1_romanov_NA_21bp_mCMV_NA"
## [1] "ELK1_romanov_NA_21bp_minP_NA"
## [1] "ESR1_10bp_10bp_mCMV_1"
## [1] "ESR1_10bp_10bp_mCMV_2"
## [1] "ESR1_10bp_10bp_mCMV_3"
## [1] "ESR1_10bp_10bp_minP_1"
## [1] "ESR1_10bp_10bp_minP_2"
## [1] "ESR1_10bp_10bp_minP_3"
## [1] "ESR1_10bp_21bp_Random_1"
## [1] "ESR1_10bp_21bp_mCMV_1"
## [1] "ESR1_10bp_21bp_mCMV_2"
## [1] "ESR1_10bp_21bp_mCMV_3"
## [1] "ESR1_10bp_21bp_minP_1"
## [1] "ESR1_10bp_21bp_minP_2"
## [1] "ESR1_10bp_21bp_minP_3"
## [1] "ESR1_5bp_10bp_mCMV_1"
## [1] "ESR1_5bp_10bp_mCMV_2"
## [1] "ESR1_5bp_10bp_mCMV_3"
## [1] "ESR1_5bp_10bp_minP_1"
## [1] "ESR1_5bp_10bp_minP_2"
## [1] "ESR1_5bp_10bp_minP_3"
## [1] "ESR1_5bp_21bp_mCMV_1"
## [1] "ESR1_5bp_21bp_mCMV_2"
## [1] "ESR1_5bp_21bp_mCMV_3"
## [1] "ESR1_5bp_21bp_minP_1"
## [1] "ESR1_5bp_21bp_minP_2"
## [1] "ESR1_5bp_21bp_minP_3"
## [1] "ESR1_romanov_NA_10bp_mCMV_NA"
## [1] "ESR1_romanov_NA_10bp_minP_NA"
## [1] "ESR1_romanov_NA_21bp_mCMV_NA"
## [1] "ESR1_romanov_NA_21bp_minP_NA"
## [1] "ESRRB_10bp_10bp_hBGm_1"
## [1] "ESRRB_10bp_10bp_hBGm_2"
## [1] "ESRRB_10bp_10bp_hBGm_3"
## [1] "ESRRB_10bp_10bp_mCMV_1"
## [1] "ESRRB_10bp_10bp_mCMV_2"
## [1] "ESRRB_10bp_10bp_mCMV_3"
## [1] "ESRRB_10bp_10bp_minP_1"
## [1] "ESRRB_10bp_10bp_minP_2"
## [1] "ESRRB_10bp_10bp_minP_3"
## [1] "ESRRB_10bp_21bp_Random_1"
## [1] "ESRRB_10bp_21bp_hBGm_1"
## [1] "ESRRB_10bp_21bp_hBGm_2"
## [1] "ESRRB_10bp_21bp_hBGm_3"
## [1] "ESRRB_10bp_21bp_mCMV_1"
## [1] "ESRRB_10bp_21bp_mCMV_2"
## [1] "ESRRB_10bp_21bp_mCMV_3"
## [1] "ESRRB_10bp_21bp_minP_1"
## [1] "ESRRB_10bp_21bp_minP_2"
## [1] "ESRRB_10bp_21bp_minP_3"
## [1] "ESRRB_5bp_10bp_hBGm_1"
## [1] "ESRRB_5bp_10bp_hBGm_2"
## [1] "ESRRB_5bp_10bp_hBGm_3"
## [1] "ESRRB_5bp_10bp_mCMV_1"
## [1] "ESRRB_5bp_10bp_mCMV_2"
## [1] "ESRRB_5bp_10bp_mCMV_3"
## [1] "ESRRB_5bp_10bp_minP_1"
## [1] "ESRRB_5bp_10bp_minP_2"
## [1] "ESRRB_5bp_10bp_minP_3"
## [1] "ESRRB_5bp_21bp_hBGm_1"
## [1] "ESRRB_5bp_21bp_hBGm_2"
## [1] "ESRRB_5bp_21bp_hBGm_3"
## [1] "ESRRB_5bp_21bp_mCMV_1"
## [1] "ESRRB_5bp_21bp_mCMV_2"
## [1] "ESRRB_5bp_21bp_mCMV_3"
## [1] "ESRRB_5bp_21bp_minP_1"
## [1] "ESRRB_5bp_21bp_minP_2"
## [1] "ESRRB_5bp_21bp_minP_3"
## [1] "ETS1_10bp_10bp_mCMV_1"
## [1] "ETS1_10bp_10bp_mCMV_2"
## [1] "ETS1_10bp_10bp_mCMV_3"
## [1] "ETS1_10bp_10bp_minP_1"
## [1] "ETS1_10bp_10bp_minP_2"
## [1] "ETS1_10bp_10bp_minP_3"
## [1] "ETS1_10bp_21bp_Random_1"
## [1] "ETS1_10bp_21bp_mCMV_1"
## [1] "ETS1_10bp_21bp_mCMV_2"
## [1] "ETS1_10bp_21bp_mCMV_3"
## [1] "ETS1_10bp_21bp_minP_1"
## [1] "ETS1_10bp_21bp_minP_2"
## [1] "ETS1_10bp_21bp_minP_3"
## [1] "ETS1_5bp_10bp_mCMV_1"
## [1] "ETS1_5bp_10bp_mCMV_2"
## [1] "ETS1_5bp_10bp_mCMV_3"
## [1] "ETS1_5bp_10bp_minP_1"
## [1] "ETS1_5bp_10bp_minP_2"
## [1] "ETS1_5bp_10bp_minP_3"
## [1] "ETS1_5bp_21bp_mCMV_1"
## [1] "ETS1_5bp_21bp_mCMV_2"
## [1] "ETS1_5bp_21bp_mCMV_3"
## [1] "ETS1_5bp_21bp_minP_1"
## [1] "ETS1_5bp_21bp_minP_2"
## [1] "ETS1_5bp_21bp_minP_3"
## [1] "ETS1_romanov_NA_10bp_mCMV_NA"
## [1] "ETS1_romanov_NA_10bp_minP_NA"
## [1] "ETS1_romanov_NA_21bp_mCMV_NA"
## [1] "ETS1_romanov_NA_21bp_minP_NA"
## [1] "FOS::JUN_10bp_10bp_mCMV_1"
## [1] "FOS::JUN_10bp_10bp_mCMV_2"
## [1] "FOS::JUN_10bp_10bp_mCMV_3"
## [1] "FOS::JUN_10bp_10bp_minP_1"
## [1] "FOS::JUN_10bp_10bp_minP_2"
## [1] "FOS::JUN_10bp_10bp_minP_3"
## [1] "FOS::JUN_10bp_21bp_Random_1"
## [1] "FOS::JUN_10bp_21bp_mCMV_1"
## [1] "FOS::JUN_10bp_21bp_mCMV_2"
## [1] "FOS::JUN_10bp_21bp_mCMV_3"
## [1] "FOS::JUN_10bp_21bp_minP_1"
## [1] "FOS::JUN_10bp_21bp_minP_2"
## [1] "FOS::JUN_10bp_21bp_minP_3"
## [1] "FOS::JUN_5bp_10bp_mCMV_1"
## [1] "FOS::JUN_5bp_10bp_mCMV_2"
## [1] "FOS::JUN_5bp_10bp_mCMV_3"
## [1] "FOS::JUN_5bp_10bp_minP_1"
## [1] "FOS::JUN_5bp_10bp_minP_2"
## [1] "FOS::JUN_5bp_10bp_minP_3"
## [1] "FOS::JUN_5bp_21bp_mCMV_1"
## [1] "FOS::JUN_5bp_21bp_mCMV_2"
## [1] "FOS::JUN_5bp_21bp_mCMV_3"
## [1] "FOS::JUN_5bp_21bp_minP_1"
## [1] "FOS::JUN_5bp_21bp_minP_2"
## [1] "FOS::JUN_5bp_21bp_minP_3"
## [1] "FOS::JUN_TF-seq_NA_10bp_mCMV_NA"
## [1] "FOS::JUN_TF-seq_NA_10bp_minP_NA"
## [1] "FOS::JUN_TF-seq_NA_21bp_mCMV_NA"
## [1] "FOS::JUN_TF-seq_NA_21bp_minP_NA"
## [1] "FOS::JUN_promega_NA_10bp_mCMV_NA"
## [1] "FOS::JUN_promega_NA_10bp_minP_NA"
## [1] "FOS::JUN_promega_NA_21bp_mCMV_NA"
## [1] "FOS::JUN_promega_NA_21bp_minP_NA"
## [1] "FOS::JUN_promega_long_NA_10bp_mCMV_NA"
## [1] "FOS::JUN_promega_long_NA_10bp_minP_NA"
## [1] "FOS::JUN_romanov_NA_10bp_mCMV_NA"
## [1] "FOS::JUN_romanov_NA_10bp_minP_NA"
## [1] "FOS::JUN_romanov_NA_21bp_mCMV_NA"
## [1] "FOS::JUN_romanov_NA_21bp_minP_NA"
## [1] "FOSL1_10bp_10bp_mCMV_1"
## [1] "FOSL1_10bp_10bp_mCMV_2"
## [1] "FOSL1_10bp_10bp_mCMV_3"
## [1] "FOSL1_10bp_10bp_minP_1"
## [1] "FOSL1_10bp_10bp_minP_2"
## [1] "FOSL1_10bp_10bp_minP_3"
## [1] "FOSL1_10bp_21bp_Random_1"
## [1] "FOSL1_10bp_21bp_mCMV_1"
## [1] "FOSL1_10bp_21bp_mCMV_2"
## [1] "FOSL1_10bp_21bp_mCMV_3"
## [1] "FOSL1_10bp_21bp_minP_1"
## [1] "FOSL1_10bp_21bp_minP_2"
## [1] "FOSL1_10bp_21bp_minP_3"
## [1] "FOSL1_5bp_10bp_mCMV_1"
## [1] "FOSL1_5bp_10bp_mCMV_2"
## [1] "FOSL1_5bp_10bp_mCMV_3"
## [1] "FOSL1_5bp_10bp_minP_1"
## [1] "FOSL1_5bp_10bp_minP_2"
## [1] "FOSL1_5bp_10bp_minP_3"
## [1] "FOSL1_5bp_21bp_mCMV_1"
## [1] "FOSL1_5bp_21bp_mCMV_2"
## [1] "FOSL1_5bp_21bp_mCMV_3"
## [1] "FOSL1_5bp_21bp_minP_1"
## [1] "FOSL1_5bp_21bp_minP_2"
## [1] "FOSL1_5bp_21bp_minP_3"
## [1] "FOXA1_10bp_10bp_mCMV_1"
## [1] "FOXA1_10bp_10bp_mCMV_2"
## [1] "FOXA1_10bp_10bp_mCMV_3"
## [1] "FOXA1_10bp_10bp_minP_1"
## [1] "FOXA1_10bp_10bp_minP_2"
## [1] "FOXA1_10bp_10bp_minP_3"
## [1] "FOXA1_10bp_21bp_Random_1"
## [1] "FOXA1_10bp_21bp_mCMV_1"
## [1] "FOXA1_10bp_21bp_mCMV_2"
## [1] "FOXA1_10bp_21bp_mCMV_3"
## [1] "FOXA1_10bp_21bp_minP_1"
## [1] "FOXA1_10bp_21bp_minP_2"
## [1] "FOXA1_10bp_21bp_minP_3"
## [1] "FOXA1_5bp_10bp_mCMV_1"
## [1] "FOXA1_5bp_10bp_mCMV_2"
## [1] "FOXA1_5bp_10bp_mCMV_3"
## [1] "FOXA1_5bp_10bp_minP_1"
## [1] "FOXA1_5bp_10bp_minP_2"
## [1] "FOXA1_5bp_10bp_minP_3"
## [1] "FOXA1_5bp_21bp_mCMV_1"
## [1] "FOXA1_5bp_21bp_mCMV_2"
## [1] "FOXA1_5bp_21bp_mCMV_3"
## [1] "FOXA1_5bp_21bp_minP_1"
## [1] "FOXA1_5bp_21bp_minP_2"
## [1] "FOXA1_5bp_21bp_minP_3"
## [1] "FOXA1_romanov_NA_10bp_mCMV_NA"
## [1] "FOXA1_romanov_NA_10bp_minP_NA"
## [1] "FOXA1_romanov_NA_21bp_mCMV_NA"
## [1] "FOXA1_romanov_NA_21bp_minP_NA"
## [1] "FOXO1_10bp_10bp_mCMV_1"
## [1] "FOXO1_10bp_10bp_mCMV_2"
## [1] "FOXO1_10bp_10bp_mCMV_3"
## [1] "FOXO1_10bp_10bp_minP_1"
## [1] "FOXO1_10bp_10bp_minP_2"
## [1] "FOXO1_10bp_10bp_minP_3"
## [1] "FOXO1_10bp_21bp_Random_1"
## [1] "FOXO1_10bp_21bp_mCMV_1"
## [1] "FOXO1_10bp_21bp_mCMV_2"
## [1] "FOXO1_10bp_21bp_mCMV_3"
## [1] "FOXO1_10bp_21bp_minP_1"
## [1] "FOXO1_10bp_21bp_minP_2"
## [1] "FOXO1_10bp_21bp_minP_3"
## [1] "FOXO1_5bp_10bp_mCMV_1"
## [1] "FOXO1_5bp_10bp_mCMV_2"
## [1] "FOXO1_5bp_10bp_mCMV_3"
## [1] "FOXO1_5bp_10bp_minP_1"
## [1] "FOXO1_5bp_10bp_minP_2"
## [1] "FOXO1_5bp_10bp_minP_3"
## [1] "FOXO1_5bp_21bp_mCMV_1"
## [1] "FOXO1_5bp_21bp_mCMV_2"
## [1] "FOXO1_5bp_21bp_mCMV_3"
## [1] "FOXO1_5bp_21bp_minP_1"
## [1] "FOXO1_5bp_21bp_minP_2"
## [1] "FOXO1_5bp_21bp_minP_3"
## [1] "FOXO1_TF-seq_NA_10bp_mCMV_NA"
## [1] "FOXO1_TF-seq_NA_10bp_minP_NA"
## [1] "FOXO1_TF-seq_NA_21bp_mCMV_NA"
## [1] "FOXO1_TF-seq_NA_21bp_minP_NA"
## [1] "FOXO1_romanov_NA_10bp_mCMV_NA"
## [1] "FOXO1_romanov_NA_10bp_minP_NA"
## [1] "FOXO1_romanov_NA_21bp_mCMV_NA"
## [1] "FOXO1_romanov_NA_21bp_minP_NA"
## [1] "GATA1_10bp_10bp_mCMV_1"
## [1] "GATA1_10bp_10bp_mCMV_2"
## [1] "GATA1_10bp_10bp_mCMV_3"
## [1] "GATA1_10bp_10bp_minP_1"
## [1] "GATA1_10bp_10bp_minP_2"
## [1] "GATA1_10bp_10bp_minP_3"
## [1] "GATA1_10bp_21bp_Random_1"
## [1] "GATA1_10bp_21bp_mCMV_1"
## [1] "GATA1_10bp_21bp_mCMV_2"
## [1] "GATA1_10bp_21bp_mCMV_3"
## [1] "GATA1_10bp_21bp_minP_1"
## [1] "GATA1_10bp_21bp_minP_2"
## [1] "GATA1_10bp_21bp_minP_3"
## [1] "GATA1_5bp_10bp_mCMV_1"
## [1] "GATA1_5bp_10bp_mCMV_2"
## [1] "GATA1_5bp_10bp_mCMV_3"
## [1] "GATA1_5bp_10bp_minP_1"
## [1] "GATA1_5bp_10bp_minP_2"
## [1] "GATA1_5bp_10bp_minP_3"
## [1] "GATA1_5bp_21bp_mCMV_1"
## [1] "GATA1_5bp_21bp_mCMV_2"
## [1] "GATA1_5bp_21bp_mCMV_3"
## [1] "GATA1_5bp_21bp_minP_1"
## [1] "GATA1_5bp_21bp_minP_2"
## [1] "GATA1_5bp_21bp_minP_3"
## [1] "GATA1_romanov_NA_10bp_mCMV_NA"
## [1] "GATA1_romanov_NA_10bp_minP_NA"
## [1] "GATA1_romanov_NA_21bp_mCMV_NA"
## [1] "GATA1_romanov_NA_21bp_minP_NA"
## [1] "GATA3_TF-seq_NA_10bp_mCMV_NA"
## [1] "GATA3_TF-seq_NA_10bp_minP_NA"
## [1] "GATA3_TF-seq_NA_21bp_mCMV_NA"
## [1] "GATA3_TF-seq_NA_21bp_minP_NA"
## [1] "GATA4_10bp_10bp_mCMV_1"
## [1] "GATA4_10bp_10bp_mCMV_2"
## [1] "GATA4_10bp_10bp_mCMV_3"
## [1] "GATA4_10bp_10bp_minP_1"
## [1] "GATA4_10bp_10bp_minP_2"
## [1] "GATA4_10bp_10bp_minP_3"
## [1] "GATA4_10bp_21bp_Random_1"
## [1] "GATA4_10bp_21bp_mCMV_1"
## [1] "GATA4_10bp_21bp_mCMV_2"
## [1] "GATA4_10bp_21bp_mCMV_3"
## [1] "GATA4_10bp_21bp_minP_1"
## [1] "GATA4_10bp_21bp_minP_2"
## [1] "GATA4_10bp_21bp_minP_3"
## [1] "GATA4_5bp_10bp_mCMV_1"
## [1] "GATA4_5bp_10bp_mCMV_2"
## [1] "GATA4_5bp_10bp_mCMV_3"
## [1] "GATA4_5bp_10bp_minP_1"
## [1] "GATA4_5bp_10bp_minP_2"
## [1] "GATA4_5bp_10bp_minP_3"
## [1] "GATA4_5bp_21bp_mCMV_1"
## [1] "GATA4_5bp_21bp_mCMV_2"
## [1] "GATA4_5bp_21bp_mCMV_3"
## [1] "GATA4_5bp_21bp_minP_1"
## [1] "GATA4_5bp_21bp_minP_2"
## [1] "GATA4_5bp_21bp_minP_3"
## [1] "GBX2_10bp_10bp_hBGm_1"
## [1] "GBX2_10bp_10bp_hBGm_2"
## [1] "GBX2_10bp_10bp_hBGm_3"
## [1] "GBX2_10bp_10bp_mCMV_1"
## [1] "GBX2_10bp_10bp_mCMV_2"
## [1] "GBX2_10bp_10bp_mCMV_3"
## [1] "GBX2_10bp_10bp_minP_1"
## [1] "GBX2_10bp_10bp_minP_2"
## [1] "GBX2_10bp_10bp_minP_3"
## [1] "GBX2_10bp_21bp_Random_1"
## [1] "GBX2_10bp_21bp_hBGm_1"
## [1] "GBX2_10bp_21bp_hBGm_2"
## [1] "GBX2_10bp_21bp_hBGm_3"
## [1] "GBX2_10bp_21bp_mCMV_1"
## [1] "GBX2_10bp_21bp_mCMV_2"
## [1] "GBX2_10bp_21bp_mCMV_3"
## [1] "GBX2_10bp_21bp_minP_1"
## [1] "GBX2_10bp_21bp_minP_2"
## [1] "GBX2_10bp_21bp_minP_3"
## [1] "GBX2_5bp_10bp_hBGm_1"
## [1] "GBX2_5bp_10bp_hBGm_2"
## [1] "GBX2_5bp_10bp_hBGm_3"
## [1] "GBX2_5bp_10bp_mCMV_1"
## [1] "GBX2_5bp_10bp_mCMV_2"
## [1] "GBX2_5bp_10bp_mCMV_3"
## [1] "GBX2_5bp_10bp_minP_1"
## [1] "GBX2_5bp_10bp_minP_2"
## [1] "GBX2_5bp_10bp_minP_3"
## [1] "GBX2_5bp_21bp_hBGm_1"
## [1] "GBX2_5bp_21bp_hBGm_2"
## [1] "GBX2_5bp_21bp_hBGm_3"
## [1] "GBX2_5bp_21bp_mCMV_1"
## [1] "GBX2_5bp_21bp_mCMV_2"
## [1] "GBX2_5bp_21bp_mCMV_3"
## [1] "GBX2_5bp_21bp_minP_1"
## [1] "GBX2_5bp_21bp_minP_2"
## [1] "GBX2_5bp_21bp_minP_3"
## [1] "GLI1_10bp_10bp_hBGm_1"
## [1] "GLI1_10bp_10bp_hBGm_2"
## [1] "GLI1_10bp_10bp_hBGm_3"
## [1] "GLI1_10bp_10bp_mCMV_1"
## [1] "GLI1_10bp_10bp_mCMV_2"
## [1] "GLI1_10bp_10bp_mCMV_3"
## [1] "GLI1_10bp_10bp_minP_1"
## [1] "GLI1_10bp_10bp_minP_2"
## [1] "GLI1_10bp_10bp_minP_3"
## [1] "GLI1_10bp_21bp_Random_1"
## [1] "GLI1_10bp_21bp_hBGm_1"
## [1] "GLI1_10bp_21bp_hBGm_2"
## [1] "GLI1_10bp_21bp_hBGm_3"
## [1] "GLI1_10bp_21bp_mCMV_1"
## [1] "GLI1_10bp_21bp_mCMV_2"
## [1] "GLI1_10bp_21bp_mCMV_3"
## [1] "GLI1_10bp_21bp_minP_1"
## [1] "GLI1_10bp_21bp_minP_2"
## [1] "GLI1_10bp_21bp_minP_3"
## [1] "GLI1_5bp_10bp_hBGm_1"
## [1] "GLI1_5bp_10bp_hBGm_2"
## [1] "GLI1_5bp_10bp_hBGm_3"
## [1] "GLI1_5bp_10bp_mCMV_1"
## [1] "GLI1_5bp_10bp_mCMV_2"
## [1] "GLI1_5bp_10bp_mCMV_3"
## [1] "GLI1_5bp_10bp_minP_1"
## [1] "GLI1_5bp_10bp_minP_2"
## [1] "GLI1_5bp_10bp_minP_3"
## [1] "GLI1_5bp_21bp_hBGm_1"
## [1] "GLI1_5bp_21bp_hBGm_2"
## [1] "GLI1_5bp_21bp_hBGm_3"
## [1] "GLI1_5bp_21bp_mCMV_1"
## [1] "GLI1_5bp_21bp_mCMV_2"
## [1] "GLI1_5bp_21bp_mCMV_3"
## [1] "GLI1_5bp_21bp_minP_1"
## [1] "GLI1_5bp_21bp_minP_2"
## [1] "GLI1_5bp_21bp_minP_3"
## [1] "GLI1_TF-seq_NA_10bp_mCMV_NA"
## [1] "GLI1_TF-seq_NA_10bp_minP_NA"
## [1] "GLI1_TF-seq_NA_21bp_mCMV_NA"
## [1] "GLI1_TF-seq_NA_21bp_minP_NA"
## [1] "GLI1_romanov_NA_10bp_mCMV_NA"
## [1] "GLI1_romanov_NA_10bp_minP_NA"
## [1] "GLI1_romanov_NA_21bp_mCMV_NA"
## [1] "GLI1_romanov_NA_21bp_minP_NA"
## [1] "GRHL1_10bp_10bp_mCMV_1"
## [1] "GRHL1_10bp_10bp_mCMV_2"
## [1] "GRHL1_10bp_10bp_mCMV_3"
## [1] "GRHL1_10bp_10bp_minP_1"
## [1] "GRHL1_10bp_10bp_minP_2"
## [1] "GRHL1_10bp_10bp_minP_3"
## [1] "GRHL1_10bp_21bp_Random_1"
## [1] "GRHL1_10bp_21bp_mCMV_1"
## [1] "GRHL1_10bp_21bp_mCMV_2"
## [1] "GRHL1_10bp_21bp_mCMV_3"
## [1] "GRHL1_10bp_21bp_minP_1"
## [1] "GRHL1_10bp_21bp_minP_2"
## [1] "GRHL1_10bp_21bp_minP_3"
## [1] "GRHL1_5bp_10bp_mCMV_1"
## [1] "GRHL1_5bp_10bp_mCMV_2"
## [1] "GRHL1_5bp_10bp_mCMV_3"
## [1] "GRHL1_5bp_10bp_minP_1"
## [1] "GRHL1_5bp_10bp_minP_2"
## [1] "GRHL1_5bp_10bp_minP_3"
## [1] "GRHL1_5bp_21bp_mCMV_1"
## [1] "GRHL1_5bp_21bp_mCMV_2"
## [1] "GRHL1_5bp_21bp_mCMV_3"
## [1] "GRHL1_5bp_21bp_minP_1"
## [1] "GRHL1_5bp_21bp_minP_2"
## [1] "GRHL1_5bp_21bp_minP_3"
## [1] "HIF1A_promega_NA_10bp_mCMV_NA"
## [1] "HIF1A_promega_NA_10bp_minP_NA"
## [1] "HIF1A_promega_NA_21bp_mCMV_NA"
## [1] "HIF1A_promega_NA_21bp_minP_NA"
## [1] "HIF1A_promega_long_NA_10bp_mCMV_NA"
## [1] "HIF1A_promega_long_NA_10bp_minP_NA"
## [1] "HNF1A_10bp_10bp_mCMV_1"
## [1] "HNF1A_10bp_10bp_mCMV_2"
## [1] "HNF1A_10bp_10bp_mCMV_3"
## [1] "HNF1A_10bp_10bp_minP_1"
## [1] "HNF1A_10bp_10bp_minP_2"
## [1] "HNF1A_10bp_10bp_minP_3"
## [1] "HNF1A_10bp_21bp_Random_1"
## [1] "HNF1A_10bp_21bp_mCMV_1"
## [1] "HNF1A_10bp_21bp_mCMV_2"
## [1] "HNF1A_10bp_21bp_mCMV_3"
## [1] "HNF1A_10bp_21bp_minP_1"
## [1] "HNF1A_10bp_21bp_minP_2"
## [1] "HNF1A_10bp_21bp_minP_3"
## [1] "HNF1A_5bp_10bp_mCMV_1"
## [1] "HNF1A_5bp_10bp_mCMV_2"
## [1] "HNF1A_5bp_10bp_mCMV_3"
## [1] "HNF1A_5bp_10bp_minP_1"
## [1] "HNF1A_5bp_10bp_minP_2"
## [1] "HNF1A_5bp_10bp_minP_3"
## [1] "HNF1A_5bp_21bp_mCMV_1"
## [1] "HNF1A_5bp_21bp_mCMV_2"
## [1] "HNF1A_5bp_21bp_mCMV_3"
## [1] "HNF1A_5bp_21bp_minP_1"
## [1] "HNF1A_5bp_21bp_minP_2"
## [1] "HNF1A_5bp_21bp_minP_3"
## [1] "HNF4A_10bp_10bp_mCMV_1"
## [1] "HNF4A_10bp_10bp_mCMV_2"
## [1] "HNF4A_10bp_10bp_mCMV_3"
## [1] "HNF4A_10bp_10bp_minP_1"
## [1] "HNF4A_10bp_10bp_minP_2"
## [1] "HNF4A_10bp_10bp_minP_3"
## [1] "HNF4A_10bp_21bp_Random_1"
## [1] "HNF4A_10bp_21bp_mCMV_1"
## [1] "HNF4A_10bp_21bp_mCMV_2"
## [1] "HNF4A_10bp_21bp_mCMV_3"
## [1] "HNF4A_10bp_21bp_minP_1"
## [1] "HNF4A_10bp_21bp_minP_2"
## [1] "HNF4A_10bp_21bp_minP_3"
## [1] "HNF4A_5bp_10bp_mCMV_1"
## [1] "HNF4A_5bp_10bp_mCMV_2"
## [1] "HNF4A_5bp_10bp_mCMV_3"
## [1] "HNF4A_5bp_10bp_minP_1"
## [1] "HNF4A_5bp_10bp_minP_2"
## [1] "HNF4A_5bp_10bp_minP_3"
## [1] "HNF4A_5bp_21bp_mCMV_1"
## [1] "HNF4A_5bp_21bp_mCMV_2"
## [1] "HNF4A_5bp_21bp_mCMV_3"
## [1] "HNF4A_5bp_21bp_minP_1"
## [1] "HNF4A_5bp_21bp_minP_2"
## [1] "HNF4A_5bp_21bp_minP_3"
## [1] "HNF4A_TF-seq_NA_10bp_mCMV_NA"
## [1] "HNF4A_TF-seq_NA_10bp_minP_NA"
## [1] "HNF4A_TF-seq_NA_21bp_mCMV_NA"
## [1] "HNF4A_TF-seq_NA_21bp_minP_NA"
## [1] "HOMEZ_10bp_10bp_hBGm_1"
## [1] "HOMEZ_10bp_10bp_hBGm_2"
## [1] "HOMEZ_10bp_10bp_hBGm_3"
## [1] "HOMEZ_10bp_10bp_mCMV_1"
## [1] "HOMEZ_10bp_10bp_mCMV_2"
## [1] "HOMEZ_10bp_10bp_mCMV_3"
## [1] "HOMEZ_10bp_10bp_minP_1"
## [1] "HOMEZ_10bp_10bp_minP_2"
## [1] "HOMEZ_10bp_10bp_minP_3"
## [1] "HOMEZ_10bp_21bp_Random_1"
## [1] "HOMEZ_10bp_21bp_hBGm_1"
## [1] "HOMEZ_10bp_21bp_hBGm_2"
## [1] "HOMEZ_10bp_21bp_hBGm_3"
## [1] "HOMEZ_10bp_21bp_mCMV_1"
## [1] "HOMEZ_10bp_21bp_mCMV_2"
## [1] "HOMEZ_10bp_21bp_mCMV_3"
## [1] "HOMEZ_10bp_21bp_minP_1"
## [1] "HOMEZ_10bp_21bp_minP_2"
## [1] "HOMEZ_10bp_21bp_minP_3"
## [1] "HOMEZ_5bp_10bp_hBGm_1"
## [1] "HOMEZ_5bp_10bp_hBGm_2"
## [1] "HOMEZ_5bp_10bp_hBGm_3"
## [1] "HOMEZ_5bp_10bp_mCMV_1"
## [1] "HOMEZ_5bp_10bp_mCMV_2"
## [1] "HOMEZ_5bp_10bp_mCMV_3"
## [1] "HOMEZ_5bp_10bp_minP_1"
## [1] "HOMEZ_5bp_10bp_minP_2"
## [1] "HOMEZ_5bp_10bp_minP_3"
## [1] "HOMEZ_5bp_21bp_hBGm_1"
## [1] "HOMEZ_5bp_21bp_hBGm_2"
## [1] "HOMEZ_5bp_21bp_hBGm_3"
## [1] "HOMEZ_5bp_21bp_mCMV_1"
## [1] "HOMEZ_5bp_21bp_mCMV_2"
## [1] "HOMEZ_5bp_21bp_mCMV_3"
## [1] "HOMEZ_5bp_21bp_minP_1"
## [1] "HOMEZ_5bp_21bp_minP_2"
## [1] "HOMEZ_5bp_21bp_minP_3"
## [1] "HSF1_10bp_10bp_mCMV_1"
## [1] "HSF1_10bp_10bp_mCMV_2"
## [1] "HSF1_10bp_10bp_mCMV_3"
## [1] "HSF1_10bp_10bp_minP_1"
## [1] "HSF1_10bp_10bp_minP_2"
## [1] "HSF1_10bp_10bp_minP_3"
## [1] "HSF1_10bp_21bp_Random_1"
## [1] "HSF1_10bp_21bp_mCMV_1"
## [1] "HSF1_10bp_21bp_mCMV_2"
## [1] "HSF1_10bp_21bp_mCMV_3"
## [1] "HSF1_10bp_21bp_minP_1"
## [1] "HSF1_10bp_21bp_minP_2"
## [1] "HSF1_10bp_21bp_minP_3"
## [1] "HSF1_5bp_10bp_mCMV_1"
## [1] "HSF1_5bp_10bp_mCMV_2"
## [1] "HSF1_5bp_10bp_mCMV_3"
## [1] "HSF1_5bp_10bp_minP_1"
## [1] "HSF1_5bp_10bp_minP_2"
## [1] "HSF1_5bp_10bp_minP_3"
## [1] "HSF1_5bp_21bp_mCMV_1"
## [1] "HSF1_5bp_21bp_mCMV_2"
## [1] "HSF1_5bp_21bp_mCMV_3"
## [1] "HSF1_5bp_21bp_minP_1"
## [1] "HSF1_5bp_21bp_minP_2"
## [1] "HSF1_5bp_21bp_minP_3"
## [1] "HSF1_promega_NA_10bp_mCMV_NA"
## [1] "HSF1_promega_NA_10bp_minP_NA"
## [1] "HSF1_promega_NA_21bp_mCMV_NA"
## [1] "HSF1_promega_NA_21bp_minP_NA"
## [1] "HSF1_promega_long_NA_10bp_mCMV_NA"
## [1] "HSF1_promega_long_NA_10bp_minP_NA"
## [1] "HSF1_romanov_NA_10bp_mCMV_NA"
## [1] "HSF1_romanov_NA_10bp_minP_NA"
## [1] "HSF1_romanov_NA_21bp_mCMV_NA"
## [1] "HSF1_romanov_NA_21bp_minP_NA"
## [1] "IRF1_TF-seq_NA_10bp_mCMV_NA"
## [1] "IRF1_TF-seq_NA_10bp_minP_NA"
## [1] "IRF1_TF-seq_NA_21bp_mCMV_NA"
## [1] "IRF1_TF-seq_NA_21bp_minP_NA"
## [1] "IRF3_10bp_10bp_hBGm_1"
## [1] "IRF3_10bp_10bp_hBGm_2"
## [1] "IRF3_10bp_10bp_hBGm_3"
## [1] "IRF3_10bp_10bp_mCMV_1"
## [1] "IRF3_10bp_10bp_mCMV_2"
## [1] "IRF3_10bp_10bp_mCMV_3"
## [1] "IRF3_10bp_10bp_minP_1"
## [1] "IRF3_10bp_10bp_minP_2"
## [1] "IRF3_10bp_10bp_minP_3"
## [1] "IRF3_10bp_21bp_Random_1"
## [1] "IRF3_10bp_21bp_hBGm_1"
## [1] "IRF3_10bp_21bp_hBGm_2"
## [1] "IRF3_10bp_21bp_hBGm_3"
## [1] "IRF3_10bp_21bp_mCMV_1"
## [1] "IRF3_10bp_21bp_mCMV_2"
## [1] "IRF3_10bp_21bp_mCMV_3"
## [1] "IRF3_10bp_21bp_minP_1"
## [1] "IRF3_10bp_21bp_minP_2"
## [1] "IRF3_10bp_21bp_minP_3"
## [1] "IRF3_5bp_10bp_hBGm_1"
## [1] "IRF3_5bp_10bp_hBGm_2"
## [1] "IRF3_5bp_10bp_hBGm_3"
## [1] "IRF3_5bp_10bp_mCMV_1"
## [1] "IRF3_5bp_10bp_mCMV_2"
## [1] "IRF3_5bp_10bp_mCMV_3"
## [1] "IRF3_5bp_10bp_minP_1"
## [1] "IRF3_5bp_10bp_minP_2"
## [1] "IRF3_5bp_10bp_minP_3"
## [1] "IRF3_5bp_21bp_hBGm_1"
## [1] "IRF3_5bp_21bp_hBGm_2"
## [1] "IRF3_5bp_21bp_hBGm_3"
## [1] "IRF3_5bp_21bp_mCMV_1"
## [1] "IRF3_5bp_21bp_mCMV_2"
## [1] "IRF3_5bp_21bp_mCMV_3"
## [1] "IRF3_5bp_21bp_minP_1"
## [1] "IRF3_5bp_21bp_minP_2"
## [1] "IRF3_5bp_21bp_minP_3"
## [1] "IRF3_TF-seq_NA_10bp_mCMV_NA"
## [1] "IRF3_TF-seq_NA_10bp_minP_NA"
## [1] "IRF3_TF-seq_NA_21bp_mCMV_NA"
## [1] "IRF3_TF-seq_NA_21bp_minP_NA"
## [1] "IRF3_promega_NA_10bp_mCMV_NA"
## [1] "IRF3_promega_NA_10bp_minP_NA"
## [1] "IRF3_promega_NA_21bp_mCMV_NA"
## [1] "IRF3_promega_NA_21bp_minP_NA"
## [1] "IRF3_romanov_NA_10bp_mCMV_NA"
## [1] "IRF3_romanov_NA_10bp_minP_NA"
## [1] "IRF3_romanov_NA_21bp_mCMV_NA"
## [1] "IRF3_romanov_NA_21bp_minP_NA"
## [1] "IRX3_10bp_10bp_hBGm_1"
## [1] "IRX3_10bp_10bp_hBGm_2"
## [1] "IRX3_10bp_10bp_hBGm_3"
## [1] "IRX3_10bp_10bp_mCMV_1"
## [1] "IRX3_10bp_10bp_mCMV_2"
## [1] "IRX3_10bp_10bp_mCMV_3"
## [1] "IRX3_10bp_10bp_minP_1"
## [1] "IRX3_10bp_10bp_minP_2"
## [1] "IRX3_10bp_10bp_minP_3"
## [1] "IRX3_10bp_21bp_Random_1"
## [1] "IRX3_10bp_21bp_hBGm_1"
## [1] "IRX3_10bp_21bp_hBGm_2"
## [1] "IRX3_10bp_21bp_hBGm_3"
## [1] "IRX3_10bp_21bp_mCMV_1"
## [1] "IRX3_10bp_21bp_mCMV_2"
## [1] "IRX3_10bp_21bp_mCMV_3"
## [1] "IRX3_10bp_21bp_minP_1"
## [1] "IRX3_10bp_21bp_minP_2"
## [1] "IRX3_10bp_21bp_minP_3"
## [1] "IRX3_5bp_10bp_hBGm_1"
## [1] "IRX3_5bp_10bp_hBGm_2"
## [1] "IRX3_5bp_10bp_hBGm_3"
## [1] "IRX3_5bp_10bp_mCMV_1"
## [1] "IRX3_5bp_10bp_mCMV_2"
## [1] "IRX3_5bp_10bp_mCMV_3"
## [1] "IRX3_5bp_10bp_minP_1"
## [1] "IRX3_5bp_10bp_minP_2"
## [1] "IRX3_5bp_10bp_minP_3"
## [1] "IRX3_5bp_21bp_hBGm_1"
## [1] "IRX3_5bp_21bp_hBGm_2"
## [1] "IRX3_5bp_21bp_hBGm_3"
## [1] "IRX3_5bp_21bp_mCMV_1"
## [1] "IRX3_5bp_21bp_mCMV_2"
## [1] "IRX3_5bp_21bp_mCMV_3"
## [1] "IRX3_5bp_21bp_minP_1"
## [1] "IRX3_5bp_21bp_minP_2"
## [1] "IRX3_5bp_21bp_minP_3"
## [1] "KLF4_10bp_10bp_hBGm_1"
## [1] "KLF4_10bp_10bp_hBGm_2"
## [1] "KLF4_10bp_10bp_hBGm_3"
## [1] "KLF4_10bp_10bp_mCMV_1"
## [1] "KLF4_10bp_10bp_mCMV_2"
## [1] "KLF4_10bp_10bp_mCMV_3"
## [1] "KLF4_10bp_10bp_minP_1"
## [1] "KLF4_10bp_10bp_minP_2"
## [1] "KLF4_10bp_10bp_minP_3"
## [1] "KLF4_10bp_21bp_Random_1"
## [1] "KLF4_10bp_21bp_hBGm_1"
## [1] "KLF4_10bp_21bp_hBGm_2"
## [1] "KLF4_10bp_21bp_hBGm_3"
## [1] "KLF4_10bp_21bp_mCMV_1"
## [1] "KLF4_10bp_21bp_mCMV_2"
## [1] "KLF4_10bp_21bp_mCMV_3"
## [1] "KLF4_10bp_21bp_minP_1"
## [1] "KLF4_10bp_21bp_minP_2"
## [1] "KLF4_10bp_21bp_minP_3"
## [1] "KLF4_5bp_10bp_hBGm_1"
## [1] "KLF4_5bp_10bp_hBGm_2"
## [1] "KLF4_5bp_10bp_hBGm_3"
## [1] "KLF4_5bp_10bp_mCMV_1"
## [1] "KLF4_5bp_10bp_mCMV_2"
## [1] "KLF4_5bp_10bp_mCMV_3"
## [1] "KLF4_5bp_10bp_minP_1"
## [1] "KLF4_5bp_10bp_minP_2"
## [1] "KLF4_5bp_10bp_minP_3"
## [1] "KLF4_5bp_21bp_hBGm_1"
## [1] "KLF4_5bp_21bp_hBGm_2"
## [1] "KLF4_5bp_21bp_hBGm_3"
## [1] "KLF4_5bp_21bp_mCMV_1"
## [1] "KLF4_5bp_21bp_mCMV_2"
## [1] "KLF4_5bp_21bp_mCMV_3"
## [1] "KLF4_5bp_21bp_minP_1"
## [1] "KLF4_5bp_21bp_minP_2"
## [1] "KLF4_5bp_21bp_minP_3"
## [1] "MAF::NFE2_10bp_10bp_mCMV_1"
## [1] "MAF::NFE2_10bp_10bp_mCMV_2"
## [1] "MAF::NFE2_10bp_10bp_mCMV_3"
## [1] "MAF::NFE2_10bp_10bp_minP_1"
## [1] "MAF::NFE2_10bp_10bp_minP_2"
## [1] "MAF::NFE2_10bp_10bp_minP_3"
## [1] "MAF::NFE2_10bp_21bp_Random_1"
## [1] "MAF::NFE2_10bp_21bp_mCMV_1"
## [1] "MAF::NFE2_10bp_21bp_mCMV_2"
## [1] "MAF::NFE2_10bp_21bp_mCMV_3"
## [1] "MAF::NFE2_10bp_21bp_minP_1"
## [1] "MAF::NFE2_10bp_21bp_minP_2"
## [1] "MAF::NFE2_10bp_21bp_minP_3"
## [1] "MAF::NFE2_5bp_10bp_mCMV_1"
## [1] "MAF::NFE2_5bp_10bp_mCMV_2"
## [1] "MAF::NFE2_5bp_10bp_mCMV_3"
## [1] "MAF::NFE2_5bp_10bp_minP_1"
## [1] "MAF::NFE2_5bp_10bp_minP_2"
## [1] "MAF::NFE2_5bp_10bp_minP_3"
## [1] "MAF::NFE2_5bp_21bp_mCMV_1"
## [1] "MAF::NFE2_5bp_21bp_mCMV_2"
## [1] "MAF::NFE2_5bp_21bp_mCMV_3"
## [1] "MAF::NFE2_5bp_21bp_minP_1"
## [1] "MAF::NFE2_5bp_21bp_minP_2"
## [1] "MAF::NFE2_5bp_21bp_minP_3"
## [1] "MAF::NFE2_TF-seq_NA_10bp_mCMV_NA"
## [1] "MAF::NFE2_TF-seq_NA_10bp_minP_NA"
## [1] "MAF::NFE2_TF-seq_NA_21bp_mCMV_NA"
## [1] "MAF::NFE2_TF-seq_NA_21bp_minP_NA"
## [1] "MAFA_10bp_10bp_mCMV_1"
## [1] "MAFA_10bp_10bp_mCMV_2"
## [1] "MAFA_10bp_10bp_mCMV_3"
## [1] "MAFA_10bp_10bp_minP_1"
## [1] "MAFA_10bp_10bp_minP_2"
## [1] "MAFA_10bp_10bp_minP_3"
## [1] "MAFA_10bp_21bp_Random_1"
## [1] "MAFA_10bp_21bp_mCMV_1"
## [1] "MAFA_10bp_21bp_mCMV_2"
## [1] "MAFA_10bp_21bp_mCMV_3"
## [1] "MAFA_10bp_21bp_minP_1"
## [1] "MAFA_10bp_21bp_minP_2"
## [1] "MAFA_10bp_21bp_minP_3"
## [1] "MAFA_5bp_10bp_mCMV_1"
## [1] "MAFA_5bp_10bp_mCMV_2"
## [1] "MAFA_5bp_10bp_mCMV_3"
## [1] "MAFA_5bp_10bp_minP_1"
## [1] "MAFA_5bp_10bp_minP_2"
## [1] "MAFA_5bp_10bp_minP_3"
## [1] "MAFA_5bp_21bp_mCMV_1"
## [1] "MAFA_5bp_21bp_mCMV_2"
## [1] "MAFA_5bp_21bp_mCMV_3"
## [1] "MAFA_5bp_21bp_minP_1"
## [1] "MAFA_5bp_21bp_minP_2"
## [1] "MAFA_5bp_21bp_minP_3"
## [1] "MEF2A_10bp_10bp_mCMV_1"
## [1] "MEF2A_10bp_10bp_mCMV_2"
## [1] "MEF2A_10bp_10bp_mCMV_3"
## [1] "MEF2A_10bp_10bp_minP_1"
## [1] "MEF2A_10bp_10bp_minP_2"
## [1] "MEF2A_10bp_10bp_minP_3"
## [1] "MEF2A_10bp_21bp_Random_1"
## [1] "MEF2A_10bp_21bp_mCMV_1"
## [1] "MEF2A_10bp_21bp_mCMV_2"
## [1] "MEF2A_10bp_21bp_mCMV_3"
## [1] "MEF2A_10bp_21bp_minP_1"
## [1] "MEF2A_10bp_21bp_minP_2"
## [1] "MEF2A_10bp_21bp_minP_3"
## [1] "MEF2A_5bp_10bp_mCMV_1"
## [1] "MEF2A_5bp_10bp_mCMV_2"
## [1] "MEF2A_5bp_10bp_mCMV_3"
## [1] "MEF2A_5bp_10bp_minP_1"
## [1] "MEF2A_5bp_10bp_minP_2"
## [1] "MEF2A_5bp_10bp_minP_3"
## [1] "MEF2A_5bp_21bp_mCMV_1"
## [1] "MEF2A_5bp_21bp_mCMV_2"
## [1] "MEF2A_5bp_21bp_mCMV_3"
## [1] "MEF2A_5bp_21bp_minP_1"
## [1] "MEF2A_5bp_21bp_minP_2"
## [1] "MEF2A_5bp_21bp_minP_3"
## [1] "MTF1_10bp_10bp_mCMV_1"
## [1] "MTF1_10bp_10bp_mCMV_2"
## [1] "MTF1_10bp_10bp_mCMV_3"
## [1] "MTF1_10bp_10bp_minP_1"
## [1] "MTF1_10bp_10bp_minP_2"
## [1] "MTF1_10bp_10bp_minP_3"
## [1] "MTF1_10bp_21bp_Random_1"
## [1] "MTF1_10bp_21bp_mCMV_1"
## [1] "MTF1_10bp_21bp_mCMV_2"
## [1] "MTF1_10bp_21bp_mCMV_3"
## [1] "MTF1_10bp_21bp_minP_1"
## [1] "MTF1_10bp_21bp_minP_2"
## [1] "MTF1_10bp_21bp_minP_3"
## [1] "MTF1_5bp_10bp_mCMV_1"
## [1] "MTF1_5bp_10bp_mCMV_2"
## [1] "MTF1_5bp_10bp_mCMV_3"
## [1] "MTF1_5bp_10bp_minP_1"
## [1] "MTF1_5bp_10bp_minP_2"
## [1] "MTF1_5bp_10bp_minP_3"
## [1] "MTF1_5bp_21bp_mCMV_1"
## [1] "MTF1_5bp_21bp_mCMV_2"
## [1] "MTF1_5bp_21bp_mCMV_3"
## [1] "MTF1_5bp_21bp_minP_1"
## [1] "MTF1_5bp_21bp_minP_2"
## [1] "MTF1_5bp_21bp_minP_3"
## [1] "MTF1_promega_NA_10bp_mCMV_NA"
## [1] "MTF1_promega_NA_10bp_minP_NA"
## [1] "MTF1_promega_NA_21bp_mCMV_NA"
## [1] "MTF1_promega_NA_21bp_minP_NA"
## [1] "MYBL2_10bp_10bp_mCMV_1"
## [1] "MYBL2_10bp_10bp_mCMV_2"
## [1] "MYBL2_10bp_10bp_mCMV_3"
## [1] "MYBL2_10bp_10bp_minP_1"
## [1] "MYBL2_10bp_10bp_minP_2"
## [1] "MYBL2_10bp_10bp_minP_3"
## [1] "MYBL2_10bp_21bp_Random_1"
## [1] "MYBL2_10bp_21bp_mCMV_1"
## [1] "MYBL2_10bp_21bp_mCMV_2"
## [1] "MYBL2_10bp_21bp_mCMV_3"
## [1] "MYBL2_10bp_21bp_minP_1"
## [1] "MYBL2_10bp_21bp_minP_2"
## [1] "MYBL2_10bp_21bp_minP_3"
## [1] "MYBL2_5bp_10bp_mCMV_1"
## [1] "MYBL2_5bp_10bp_mCMV_2"
## [1] "MYBL2_5bp_10bp_mCMV_3"
## [1] "MYBL2_5bp_10bp_minP_1"
## [1] "MYBL2_5bp_10bp_minP_2"
## [1] "MYBL2_5bp_10bp_minP_3"
## [1] "MYBL2_5bp_21bp_mCMV_1"
## [1] "MYBL2_5bp_21bp_mCMV_2"
## [1] "MYBL2_5bp_21bp_mCMV_3"
## [1] "MYBL2_5bp_21bp_minP_1"
## [1] "MYBL2_5bp_21bp_minP_2"
## [1] "MYBL2_5bp_21bp_minP_3"
## [1] "MYBL2_romanov_NA_10bp_mCMV_NA"
## [1] "MYBL2_romanov_NA_10bp_minP_NA"
## [1] "MYBL2_romanov_NA_21bp_mCMV_NA"
## [1] "MYBL2_romanov_NA_21bp_minP_NA"
## [1] "Myc_romanov_NA_10bp_mCMV_NA"
## [1] "Myc_romanov_NA_10bp_minP_NA"
## [1] "Myc_romanov_NA_21bp_mCMV_NA"
## [1] "Myc_romanov_NA_21bp_minP_NA"
## [1] "NEUROG2_10bp_10bp_hBGm_1"
## [1] "NEUROG2_10bp_10bp_hBGm_2"
## [1] "NEUROG2_10bp_10bp_hBGm_3"
## [1] "NEUROG2_10bp_10bp_mCMV_1"
## [1] "NEUROG2_10bp_10bp_mCMV_2"
## [1] "NEUROG2_10bp_10bp_mCMV_3"
## [1] "NEUROG2_10bp_10bp_minP_1"
## [1] "NEUROG2_10bp_10bp_minP_2"
## [1] "NEUROG2_10bp_10bp_minP_3"
## [1] "NEUROG2_10bp_21bp_Random_1"
## [1] "NEUROG2_10bp_21bp_hBGm_1"
## [1] "NEUROG2_10bp_21bp_hBGm_2"
## [1] "NEUROG2_10bp_21bp_hBGm_3"
## [1] "NEUROG2_10bp_21bp_mCMV_1"
## [1] "NEUROG2_10bp_21bp_mCMV_2"
## [1] "NEUROG2_10bp_21bp_mCMV_3"
## [1] "NEUROG2_10bp_21bp_minP_1"
## [1] "NEUROG2_10bp_21bp_minP_2"
## [1] "NEUROG2_10bp_21bp_minP_3"
## [1] "NEUROG2_5bp_10bp_hBGm_1"
## [1] "NEUROG2_5bp_10bp_hBGm_2"
## [1] "NEUROG2_5bp_10bp_hBGm_3"
## [1] "NEUROG2_5bp_10bp_mCMV_1"
## [1] "NEUROG2_5bp_10bp_mCMV_2"
## [1] "NEUROG2_5bp_10bp_mCMV_3"
## [1] "NEUROG2_5bp_10bp_minP_1"
## [1] "NEUROG2_5bp_10bp_minP_2"
## [1] "NEUROG2_5bp_10bp_minP_3"
## [1] "NEUROG2_5bp_21bp_hBGm_1"
## [1] "NEUROG2_5bp_21bp_hBGm_2"
## [1] "NEUROG2_5bp_21bp_hBGm_3"
## [1] "NEUROG2_5bp_21bp_mCMV_1"
## [1] "NEUROG2_5bp_21bp_mCMV_2"
## [1] "NEUROG2_5bp_21bp_mCMV_3"
## [1] "NEUROG2_5bp_21bp_minP_1"
## [1] "NEUROG2_5bp_21bp_minP_2"
## [1] "NEUROG2_5bp_21bp_minP_3"
## [1] "NFAT5_10bp_10bp_mCMV_1"
## [1] "NFAT5_10bp_10bp_mCMV_2"
## [1] "NFAT5_10bp_10bp_mCMV_3"
## [1] "NFAT5_10bp_10bp_minP_1"
## [1] "NFAT5_10bp_10bp_minP_2"
## [1] "NFAT5_10bp_10bp_minP_3"
## [1] "NFAT5_10bp_21bp_Random_1"
## [1] "NFAT5_10bp_21bp_mCMV_1"
## [1] "NFAT5_10bp_21bp_mCMV_2"
## [1] "NFAT5_10bp_21bp_mCMV_3"
## [1] "NFAT5_10bp_21bp_minP_1"
## [1] "NFAT5_10bp_21bp_minP_2"
## [1] "NFAT5_10bp_21bp_minP_3"
## [1] "NFAT5_5bp_10bp_mCMV_1"
## [1] "NFAT5_5bp_10bp_mCMV_2"
## [1] "NFAT5_5bp_10bp_mCMV_3"
## [1] "NFAT5_5bp_10bp_minP_1"
## [1] "NFAT5_5bp_10bp_minP_2"
## [1] "NFAT5_5bp_10bp_minP_3"
## [1] "NFAT5_5bp_21bp_mCMV_1"
## [1] "NFAT5_5bp_21bp_mCMV_2"
## [1] "NFAT5_5bp_21bp_mCMV_3"
## [1] "NFAT5_5bp_21bp_minP_1"
## [1] "NFAT5_5bp_21bp_minP_2"
## [1] "NFAT5_5bp_21bp_minP_3"
## [1] "NFAT5_promega_NA_10bp_mCMV_NA"
## [1] "NFAT5_promega_NA_10bp_minP_NA"
## [1] "NFAT5_promega_NA_21bp_mCMV_NA"
## [1] "NFAT5_promega_NA_21bp_minP_NA"
## [1] "NFAT5_promega_long_NA_10bp_mCMV_NA"
## [1] "NFAT5_promega_long_NA_10bp_minP_NA"
## [1] "NFATc1_10bp_10bp_mCMV_1"
## [1] "NFATc1_10bp_10bp_mCMV_2"
## [1] "NFATc1_10bp_10bp_mCMV_3"
## [1] "NFATc1_10bp_10bp_minP_1"
## [1] "NFATc1_10bp_10bp_minP_2"
## [1] "NFATc1_10bp_10bp_minP_3"
## [1] "NFATc1_10bp_21bp_Random_1"
## [1] "NFATc1_10bp_21bp_mCMV_1"
## [1] "NFATc1_10bp_21bp_mCMV_2"
## [1] "NFATc1_10bp_21bp_mCMV_3"
## [1] "NFATc1_10bp_21bp_minP_1"
## [1] "NFATc1_10bp_21bp_minP_2"
## [1] "NFATc1_10bp_21bp_minP_3"
## [1] "NFATc1_5bp_10bp_mCMV_1"
## [1] "NFATc1_5bp_10bp_mCMV_2"
## [1] "NFATc1_5bp_10bp_mCMV_3"
## [1] "NFATc1_5bp_10bp_minP_1"
## [1] "NFATc1_5bp_10bp_minP_2"
## [1] "NFATc1_5bp_10bp_minP_3"
## [1] "NFATc1_5bp_21bp_mCMV_1"
## [1] "NFATc1_5bp_21bp_mCMV_2"
## [1] "NFATc1_5bp_21bp_mCMV_3"
## [1] "NFATc1_5bp_21bp_minP_1"
## [1] "NFATc1_5bp_21bp_minP_2"
## [1] "NFATc1_5bp_21bp_minP_3"
## [1] "NFE2L2_10bp_10bp_hBGm_1"
## [1] "NFE2L2_10bp_10bp_hBGm_2"
## [1] "NFE2L2_10bp_10bp_hBGm_3"
## [1] "NFE2L2_10bp_10bp_mCMV_1"
## [1] "NFE2L2_10bp_10bp_mCMV_2"
## [1] "NFE2L2_10bp_10bp_mCMV_3"
## [1] "NFE2L2_10bp_10bp_minP_1"
## [1] "NFE2L2_10bp_10bp_minP_2"
## [1] "NFE2L2_10bp_10bp_minP_3"
## [1] "NFE2L2_10bp_21bp_Random_1"
## [1] "NFE2L2_10bp_21bp_hBGm_1"
## [1] "NFE2L2_10bp_21bp_hBGm_2"
## [1] "NFE2L2_10bp_21bp_hBGm_3"
## [1] "NFE2L2_10bp_21bp_mCMV_1"
## [1] "NFE2L2_10bp_21bp_mCMV_2"
## [1] "NFE2L2_10bp_21bp_mCMV_3"
## [1] "NFE2L2_10bp_21bp_minP_1"
## [1] "NFE2L2_10bp_21bp_minP_2"
## [1] "NFE2L2_10bp_21bp_minP_3"
## [1] "NFE2L2_5bp_10bp_hBGm_1"
## [1] "NFE2L2_5bp_10bp_hBGm_2"
## [1] "NFE2L2_5bp_10bp_hBGm_3"
## [1] "NFE2L2_5bp_10bp_mCMV_1"
## [1] "NFE2L2_5bp_10bp_mCMV_2"
## [1] "NFE2L2_5bp_10bp_mCMV_3"
## [1] "NFE2L2_5bp_10bp_minP_1"
## [1] "NFE2L2_5bp_10bp_minP_2"
## [1] "NFE2L2_5bp_10bp_minP_3"
## [1] "NFE2L2_5bp_21bp_hBGm_1"
## [1] "NFE2L2_5bp_21bp_hBGm_2"
## [1] "NFE2L2_5bp_21bp_hBGm_3"
## [1] "NFE2L2_5bp_21bp_mCMV_1"
## [1] "NFE2L2_5bp_21bp_mCMV_2"
## [1] "NFE2L2_5bp_21bp_mCMV_3"
## [1] "NFE2L2_5bp_21bp_minP_1"
## [1] "NFE2L2_5bp_21bp_minP_2"
## [1] "NFE2L2_5bp_21bp_minP_3"
## [1] "NFE2L2_TF-seq_NA_10bp_mCMV_NA"
## [1] "NFE2L2_TF-seq_NA_10bp_minP_NA"
## [1] "NFE2L2_TF-seq_NA_21bp_mCMV_NA"
## [1] "NFE2L2_TF-seq_NA_21bp_minP_NA"
## [1] "NFE2L2_promega_NA_10bp_mCMV_NA"
## [1] "NFE2L2_promega_NA_10bp_minP_NA"
## [1] "NFE2L2_promega_NA_21bp_mCMV_NA"
## [1] "NFE2L2_promega_NA_21bp_minP_NA"
## [1] "NFE2L2_promega_long_NA_10bp_mCMV_NA"
## [1] "NFE2L2_promega_long_NA_10bp_minP_NA"
## [1] "NFE2L2_romanov_NA_10bp_mCMV_NA"
## [1] "NFE2L2_romanov_NA_10bp_minP_NA"
## [1] "NFE2L2_romanov_NA_21bp_mCMV_NA"
## [1] "NFE2L2_romanov_NA_21bp_minP_NA"
## [1] "NFE2_romanov_NA_10bp_mCMV_NA"
## [1] "NFE2_romanov_NA_10bp_minP_NA"
## [1] "NFE2_romanov_NA_21bp_mCMV_NA"
## [1] "NFE2_romanov_NA_21bp_minP_NA"
## [1] "NFIA_10bp_10bp_mCMV_1"
## [1] "NFIA_10bp_10bp_mCMV_2"
## [1] "NFIA_10bp_10bp_mCMV_3"
## [1] "NFIA_10bp_10bp_minP_1"
## [1] "NFIA_10bp_10bp_minP_2"
## [1] "NFIA_10bp_10bp_minP_3"
## [1] "NFIA_10bp_21bp_Random_1"
## [1] "NFIA_10bp_21bp_mCMV_1"
## [1] "NFIA_10bp_21bp_mCMV_2"
## [1] "NFIA_10bp_21bp_mCMV_3"
## [1] "NFIA_10bp_21bp_minP_1"
## [1] "NFIA_10bp_21bp_minP_2"
## [1] "NFIA_10bp_21bp_minP_3"
## [1] "NFIA_5bp_10bp_mCMV_1"
## [1] "NFIA_5bp_10bp_mCMV_2"
## [1] "NFIA_5bp_10bp_mCMV_3"
## [1] "NFIA_5bp_10bp_minP_1"
## [1] "NFIA_5bp_10bp_minP_2"
## [1] "NFIA_5bp_10bp_minP_3"
## [1] "NFIA_5bp_21bp_mCMV_1"
## [1] "NFIA_5bp_21bp_mCMV_2"
## [1] "NFIA_5bp_21bp_mCMV_3"
## [1] "NFIA_5bp_21bp_minP_1"
## [1] "NFIA_5bp_21bp_minP_2"
## [1] "NFIA_5bp_21bp_minP_3"
## [1] "NFIA_romanov_NA_10bp_mCMV_NA"
## [1] "NFIA_romanov_NA_10bp_minP_NA"
## [1] "NFIA_romanov_NA_21bp_mCMV_NA"
## [1] "NFIA_romanov_NA_21bp_minP_NA"
## [1] "NFKB1_10bp_10bp_hBGm_1"
## [1] "NFKB1_10bp_10bp_hBGm_2"
## [1] "NFKB1_10bp_10bp_hBGm_3"
## [1] "NFKB1_10bp_10bp_mCMV_1"
## [1] "NFKB1_10bp_10bp_mCMV_2"
## [1] "NFKB1_10bp_10bp_mCMV_3"
## [1] "NFKB1_10bp_10bp_minP_1"
## [1] "NFKB1_10bp_10bp_minP_2"
## [1] "NFKB1_10bp_10bp_minP_3"
## [1] "NFKB1_10bp_21bp_Random_1"
## [1] "NFKB1_10bp_21bp_hBGm_1"
## [1] "NFKB1_10bp_21bp_hBGm_2"
## [1] "NFKB1_10bp_21bp_hBGm_3"
## [1] "NFKB1_10bp_21bp_mCMV_1"
## [1] "NFKB1_10bp_21bp_mCMV_2"
## [1] "NFKB1_10bp_21bp_mCMV_3"
## [1] "NFKB1_10bp_21bp_minP_1"
## [1] "NFKB1_10bp_21bp_minP_2"
## [1] "NFKB1_10bp_21bp_minP_3"
## [1] "NFKB1_5bp_10bp_hBGm_1"
## [1] "NFKB1_5bp_10bp_hBGm_2"
## [1] "NFKB1_5bp_10bp_hBGm_3"
## [1] "NFKB1_5bp_10bp_mCMV_1"
## [1] "NFKB1_5bp_10bp_mCMV_2"
## [1] "NFKB1_5bp_10bp_mCMV_3"
## [1] "NFKB1_5bp_10bp_minP_1"
## [1] "NFKB1_5bp_10bp_minP_2"
## [1] "NFKB1_5bp_10bp_minP_3"
## [1] "NFKB1_5bp_21bp_hBGm_1"
## [1] "NFKB1_5bp_21bp_hBGm_2"
## [1] "NFKB1_5bp_21bp_hBGm_3"
## [1] "NFKB1_5bp_21bp_mCMV_1"
## [1] "NFKB1_5bp_21bp_mCMV_2"
## [1] "NFKB1_5bp_21bp_mCMV_3"
## [1] "NFKB1_5bp_21bp_minP_1"
## [1] "NFKB1_5bp_21bp_minP_2"
## [1] "NFKB1_5bp_21bp_minP_3"
## [1] "NFKB1_TF-seq_NA_10bp_mCMV_NA"
## [1] "NFKB1_TF-seq_NA_10bp_minP_NA"
## [1] "NFKB1_TF-seq_NA_21bp_mCMV_NA"
## [1] "NFKB1_TF-seq_NA_21bp_minP_NA"
## [1] "NFKB1_promega_NA_10bp_mCMV_NA"
## [1] "NFKB1_promega_NA_10bp_minP_NA"
## [1] "NFKB1_promega_NA_21bp_mCMV_NA"
## [1] "NFKB1_promega_NA_21bp_minP_NA"
## [1] "NFKB1_promega_long_NA_10bp_mCMV_NA"
## [1] "NFKB1_promega_long_NA_10bp_minP_NA"
## [1] "NFKB1_romanov_NA_10bp_mCMV_NA"
## [1] "NFKB1_romanov_NA_10bp_minP_NA"
## [1] "NFKB1_romanov_NA_21bp_mCMV_NA"
## [1] "NFKB1_romanov_NA_21bp_minP_NA"
## [1] "NFYA_10bp_10bp_hBGm_1"
## [1] "NFYA_10bp_10bp_hBGm_2"
## [1] "NFYA_10bp_10bp_hBGm_3"
## [1] "NFYA_10bp_10bp_mCMV_1"
## [1] "NFYA_10bp_10bp_mCMV_2"
## [1] "NFYA_10bp_10bp_mCMV_3"
## [1] "NFYA_10bp_10bp_minP_1"
## [1] "NFYA_10bp_10bp_minP_2"
## [1] "NFYA_10bp_10bp_minP_3"
## [1] "NFYA_10bp_21bp_Random_1"
## [1] "NFYA_10bp_21bp_hBGm_1"
## [1] "NFYA_10bp_21bp_hBGm_2"
## [1] "NFYA_10bp_21bp_hBGm_3"
## [1] "NFYA_10bp_21bp_mCMV_1"
## [1] "NFYA_10bp_21bp_mCMV_2"
## [1] "NFYA_10bp_21bp_mCMV_3"
## [1] "NFYA_10bp_21bp_minP_1"
## [1] "NFYA_10bp_21bp_minP_2"
## [1] "NFYA_10bp_21bp_minP_3"
## [1] "NFYA_5bp_10bp_hBGm_1"
## [1] "NFYA_5bp_10bp_hBGm_2"
## [1] "NFYA_5bp_10bp_hBGm_3"
## [1] "NFYA_5bp_10bp_mCMV_1"
## [1] "NFYA_5bp_10bp_mCMV_2"
## [1] "NFYA_5bp_10bp_mCMV_3"
## [1] "NFYA_5bp_10bp_minP_1"
## [1] "NFYA_5bp_10bp_minP_2"
## [1] "NFYA_5bp_10bp_minP_3"
## [1] "NFYA_5bp_21bp_hBGm_1"
## [1] "NFYA_5bp_21bp_hBGm_2"
## [1] "NFYA_5bp_21bp_hBGm_3"
## [1] "NFYA_5bp_21bp_mCMV_1"
## [1] "NFYA_5bp_21bp_mCMV_2"
## [1] "NFYA_5bp_21bp_mCMV_3"
## [1] "NFYA_5bp_21bp_minP_1"
## [1] "NFYA_5bp_21bp_minP_2"
## [1] "NFYA_5bp_21bp_minP_3"
## [1] "NFYA_TF-seq_NA_10bp_mCMV_NA"
## [1] "NFYA_TF-seq_NA_10bp_minP_NA"
## [1] "NFYA_TF-seq_NA_21bp_mCMV_NA"
## [1] "NFYA_TF-seq_NA_21bp_minP_NA"
## [1] "NR1D1_10bp_10bp_mCMV_1"
## [1] "NR1D1_10bp_10bp_mCMV_2"
## [1] "NR1D1_10bp_10bp_mCMV_3"
## [1] "NR1D1_10bp_10bp_minP_1"
## [1] "NR1D1_10bp_10bp_minP_2"
## [1] "NR1D1_10bp_10bp_minP_3"
## [1] "NR1D1_10bp_21bp_Random_1"
## [1] "NR1D1_10bp_21bp_mCMV_1"
## [1] "NR1D1_10bp_21bp_mCMV_2"
## [1] "NR1D1_10bp_21bp_mCMV_3"
## [1] "NR1D1_10bp_21bp_minP_1"
## [1] "NR1D1_10bp_21bp_minP_2"
## [1] "NR1D1_10bp_21bp_minP_3"
## [1] "NR1D1_5bp_10bp_mCMV_1"
## [1] "NR1D1_5bp_10bp_mCMV_2"
## [1] "NR1D1_5bp_10bp_mCMV_3"
## [1] "NR1D1_5bp_10bp_minP_1"
## [1] "NR1D1_5bp_10bp_minP_2"
## [1] "NR1D1_5bp_10bp_minP_3"
## [1] "NR1D1_5bp_21bp_mCMV_1"
## [1] "NR1D1_5bp_21bp_mCMV_2"
## [1] "NR1D1_5bp_21bp_mCMV_3"
## [1] "NR1D1_5bp_21bp_minP_1"
## [1] "NR1D1_5bp_21bp_minP_2"
## [1] "NR1D1_5bp_21bp_minP_3"
## [1] "NR1H2_10bp_10bp_mCMV_1"
## [1] "NR1H2_10bp_10bp_mCMV_2"
## [1] "NR1H2_10bp_10bp_mCMV_3"
## [1] "NR1H2_10bp_10bp_minP_1"
## [1] "NR1H2_10bp_10bp_minP_2"
## [1] "NR1H2_10bp_10bp_minP_3"
## [1] "NR1H2_10bp_21bp_Random_1"
## [1] "NR1H2_10bp_21bp_mCMV_1"
## [1] "NR1H2_10bp_21bp_mCMV_2"
## [1] "NR1H2_10bp_21bp_mCMV_3"
## [1] "NR1H2_10bp_21bp_minP_1"
## [1] "NR1H2_10bp_21bp_minP_2"
## [1] "NR1H2_10bp_21bp_minP_3"
## [1] "NR1H2_5bp_10bp_mCMV_1"
## [1] "NR1H2_5bp_10bp_mCMV_2"
## [1] "NR1H2_5bp_10bp_mCMV_3"
## [1] "NR1H2_5bp_10bp_minP_1"
## [1] "NR1H2_5bp_10bp_minP_2"
## [1] "NR1H2_5bp_10bp_minP_3"
## [1] "NR1H2_5bp_21bp_mCMV_1"
## [1] "NR1H2_5bp_21bp_mCMV_2"
## [1] "NR1H2_5bp_21bp_mCMV_3"
## [1] "NR1H2_5bp_21bp_minP_1"
## [1] "NR1H2_5bp_21bp_minP_2"
## [1] "NR1H2_5bp_21bp_minP_3"
## [1] "NR1H2_TF-seq_NA_10bp_mCMV_NA"
## [1] "NR1H2_TF-seq_NA_10bp_minP_NA"
## [1] "NR1H2_TF-seq_NA_21bp_mCMV_NA"
## [1] "NR1H2_TF-seq_NA_21bp_minP_NA"
## [1] "NR1H2_romanov_NA_10bp_mCMV_NA"
## [1] "NR1H2_romanov_NA_10bp_minP_NA"
## [1] "NR1H2_romanov_NA_21bp_mCMV_NA"
## [1] "NR1H2_romanov_NA_21bp_minP_NA"
## [1] "NR1H4::RXRA_10bp_10bp_mCMV_1"
## [1] "NR1H4::RXRA_10bp_10bp_mCMV_2"
## [1] "NR1H4::RXRA_10bp_10bp_mCMV_3"
## [1] "NR1H4::RXRA_10bp_10bp_minP_1"
## [1] "NR1H4::RXRA_10bp_10bp_minP_2"
## [1] "NR1H4::RXRA_10bp_10bp_minP_3"
## [1] "NR1H4::RXRA_10bp_21bp_Random_1"
## [1] "NR1H4::RXRA_10bp_21bp_mCMV_1"
## [1] "NR1H4::RXRA_10bp_21bp_mCMV_2"
## [1] "NR1H4::RXRA_10bp_21bp_mCMV_3"
## [1] "NR1H4::RXRA_10bp_21bp_minP_1"
## [1] "NR1H4::RXRA_10bp_21bp_minP_2"
## [1] "NR1H4::RXRA_10bp_21bp_minP_3"
## [1] "NR1H4::RXRA_5bp_10bp_mCMV_1"
## [1] "NR1H4::RXRA_5bp_10bp_mCMV_2"
## [1] "NR1H4::RXRA_5bp_10bp_mCMV_3"
## [1] "NR1H4::RXRA_5bp_10bp_minP_1"
## [1] "NR1H4::RXRA_5bp_10bp_minP_2"
## [1] "NR1H4::RXRA_5bp_10bp_minP_3"
## [1] "NR1H4::RXRA_5bp_21bp_mCMV_1"
## [1] "NR1H4::RXRA_5bp_21bp_mCMV_2"
## [1] "NR1H4::RXRA_5bp_21bp_mCMV_3"
## [1] "NR1H4::RXRA_5bp_21bp_minP_1"
## [1] "NR1H4::RXRA_5bp_21bp_minP_2"
## [1] "NR1H4::RXRA_5bp_21bp_minP_3"
## [1] "NR1H4::RXRA_TF-seq_NA_10bp_mCMV_NA"
## [1] "NR1H4::RXRA_TF-seq_NA_10bp_minP_NA"
## [1] "NR1H4::RXRA_TF-seq_NA_21bp_mCMV_NA"
## [1] "NR1H4::RXRA_TF-seq_NA_21bp_minP_NA"
## [1] "NR1I2_10bp_10bp_mCMV_1"
## [1] "NR1I2_10bp_10bp_mCMV_2"
## [1] "NR1I2_10bp_10bp_mCMV_3"
## [1] "NR1I2_10bp_10bp_minP_1"
## [1] "NR1I2_10bp_10bp_minP_2"
## [1] "NR1I2_10bp_10bp_minP_3"
## [1] "NR1I2_10bp_21bp_Random_1"
## [1] "NR1I2_10bp_21bp_mCMV_1"
## [1] "NR1I2_10bp_21bp_mCMV_2"
## [1] "NR1I2_10bp_21bp_mCMV_3"
## [1] "NR1I2_10bp_21bp_minP_1"
## [1] "NR1I2_10bp_21bp_minP_2"
## [1] "NR1I2_10bp_21bp_minP_3"
## [1] "NR1I2_5bp_10bp_mCMV_1"
## [1] "NR1I2_5bp_10bp_mCMV_2"
## [1] "NR1I2_5bp_10bp_mCMV_3"
## [1] "NR1I2_5bp_10bp_minP_1"
## [1] "NR1I2_5bp_10bp_minP_2"
## [1] "NR1I2_5bp_10bp_minP_3"
## [1] "NR1I2_5bp_21bp_mCMV_1"
## [1] "NR1I2_5bp_21bp_mCMV_2"
## [1] "NR1I2_5bp_21bp_mCMV_3"
## [1] "NR1I2_5bp_21bp_minP_1"
## [1] "NR1I2_5bp_21bp_minP_2"
## [1] "NR1I2_5bp_21bp_minP_3"
## [1] "NR1I3_10bp_10bp_mCMV_1"
## [1] "NR1I3_10bp_10bp_mCMV_2"
## [1] "NR1I3_10bp_10bp_mCMV_3"
## [1] "NR1I3_10bp_10bp_minP_1"
## [1] "NR1I3_10bp_10bp_minP_2"
## [1] "NR1I3_10bp_10bp_minP_3"
## [1] "NR1I3_10bp_21bp_Random_1"
## [1] "NR1I3_10bp_21bp_mCMV_1"
## [1] "NR1I3_10bp_21bp_mCMV_2"
## [1] "NR1I3_10bp_21bp_mCMV_3"
## [1] "NR1I3_10bp_21bp_minP_1"
## [1] "NR1I3_10bp_21bp_minP_2"
## [1] "NR1I3_10bp_21bp_minP_3"
## [1] "NR1I3_5bp_10bp_mCMV_1"
## [1] "NR1I3_5bp_10bp_mCMV_2"
## [1] "NR1I3_5bp_10bp_mCMV_3"
## [1] "NR1I3_5bp_10bp_minP_1"
## [1] "NR1I3_5bp_10bp_minP_2"
## [1] "NR1I3_5bp_10bp_minP_3"
## [1] "NR1I3_5bp_21bp_mCMV_1"
## [1] "NR1I3_5bp_21bp_mCMV_2"
## [1] "NR1I3_5bp_21bp_mCMV_3"
## [1] "NR1I3_5bp_21bp_minP_1"
## [1] "NR1I3_5bp_21bp_minP_2"
## [1] "NR1I3_5bp_21bp_minP_3"
## [1] "NR1I3_romanov_NA_10bp_mCMV_NA"
## [1] "NR1I3_romanov_NA_10bp_minP_NA"
## [1] "NR1I3_romanov_NA_21bp_mCMV_NA"
## [1] "NR1I3_romanov_NA_21bp_minP_NA"
## [1] "NR2E3_10bp_10bp_mCMV_1"
## [1] "NR2E3_10bp_10bp_mCMV_2"
## [1] "NR2E3_10bp_10bp_mCMV_3"
## [1] "NR2E3_10bp_10bp_minP_1"
## [1] "NR2E3_10bp_10bp_minP_2"
## [1] "NR2E3_10bp_10bp_minP_3"
## [1] "NR2E3_10bp_21bp_Random_1"
## [1] "NR2E3_10bp_21bp_mCMV_1"
## [1] "NR2E3_10bp_21bp_mCMV_2"
## [1] "NR2E3_10bp_21bp_mCMV_3"
## [1] "NR2E3_10bp_21bp_minP_1"
## [1] "NR2E3_10bp_21bp_minP_2"
## [1] "NR2E3_10bp_21bp_minP_3"
## [1] "NR2E3_5bp_10bp_mCMV_1"
## [1] "NR2E3_5bp_10bp_mCMV_2"
## [1] "NR2E3_5bp_10bp_mCMV_3"
## [1] "NR2E3_5bp_10bp_minP_1"
## [1] "NR2E3_5bp_10bp_minP_2"
## [1] "NR2E3_5bp_10bp_minP_3"
## [1] "NR2E3_5bp_21bp_mCMV_1"
## [1] "NR2E3_5bp_21bp_mCMV_2"
## [1] "NR2E3_5bp_21bp_mCMV_3"
## [1] "NR2E3_5bp_21bp_minP_1"
## [1] "NR2E3_5bp_21bp_minP_2"
## [1] "NR2E3_5bp_21bp_minP_3"
## [1] "NR3C1_10bp_10bp_hBGm_1"
## [1] "NR3C1_10bp_10bp_hBGm_2"
## [1] "NR3C1_10bp_10bp_hBGm_3"
## [1] "NR3C1_10bp_10bp_mCMV_1"
## [1] "NR3C1_10bp_10bp_mCMV_2"
## [1] "NR3C1_10bp_10bp_mCMV_3"
## [1] "NR3C1_10bp_10bp_minP_1"
## [1] "NR3C1_10bp_10bp_minP_2"
## [1] "NR3C1_10bp_10bp_minP_3"
## [1] "NR3C1_10bp_21bp_Random_1"
## [1] "NR3C1_10bp_21bp_hBGm_1"
## [1] "NR3C1_10bp_21bp_hBGm_2"
## [1] "NR3C1_10bp_21bp_hBGm_3"
## [1] "NR3C1_10bp_21bp_mCMV_1"
## [1] "NR3C1_10bp_21bp_mCMV_2"
## [1] "NR3C1_10bp_21bp_mCMV_3"
## [1] "NR3C1_10bp_21bp_minP_1"
## [1] "NR3C1_10bp_21bp_minP_2"
## [1] "NR3C1_10bp_21bp_minP_3"
## [1] "NR3C1_5bp_10bp_hBGm_1"
## [1] "NR3C1_5bp_10bp_hBGm_2"
## [1] "NR3C1_5bp_10bp_hBGm_3"
## [1] "NR3C1_5bp_10bp_mCMV_1"
## [1] "NR3C1_5bp_10bp_mCMV_2"
## [1] "NR3C1_5bp_10bp_mCMV_3"
## [1] "NR3C1_5bp_10bp_minP_1"
## [1] "NR3C1_5bp_10bp_minP_2"
## [1] "NR3C1_5bp_10bp_minP_3"
## [1] "NR3C1_5bp_21bp_hBGm_1"
## [1] "NR3C1_5bp_21bp_hBGm_2"
## [1] "NR3C1_5bp_21bp_hBGm_3"
## [1] "NR3C1_5bp_21bp_mCMV_1"
## [1] "NR3C1_5bp_21bp_mCMV_2"
## [1] "NR3C1_5bp_21bp_mCMV_3"
## [1] "NR3C1_5bp_21bp_minP_1"
## [1] "NR3C1_5bp_21bp_minP_2"
## [1] "NR3C1_5bp_21bp_minP_3"
## [1] "NR3C1_TF-seq_NA_10bp_mCMV_NA"
## [1] "NR3C1_TF-seq_NA_10bp_minP_NA"
## [1] "NR3C1_TF-seq_NA_21bp_mCMV_NA"
## [1] "NR3C1_TF-seq_NA_21bp_minP_NA"
## [1] "NR3C1_romanov_NA_10bp_mCMV_NA"
## [1] "NR3C1_romanov_NA_10bp_minP_NA"
## [1] "NR3C1_romanov_NA_21bp_mCMV_NA"
## [1] "NR3C1_romanov_NA_21bp_minP_NA"
## [1] "NR3C2_10bp_10bp_mCMV_1"
## [1] "NR3C2_10bp_10bp_mCMV_2"
## [1] "NR3C2_10bp_10bp_mCMV_3"
## [1] "NR3C2_10bp_10bp_minP_1"
## [1] "NR3C2_10bp_10bp_minP_2"
## [1] "NR3C2_10bp_10bp_minP_3"
## [1] "NR3C2_10bp_21bp_Random_1"
## [1] "NR3C2_10bp_21bp_mCMV_1"
## [1] "NR3C2_10bp_21bp_mCMV_2"
## [1] "NR3C2_10bp_21bp_mCMV_3"
## [1] "NR3C2_10bp_21bp_minP_1"
## [1] "NR3C2_10bp_21bp_minP_2"
## [1] "NR3C2_10bp_21bp_minP_3"
## [1] "NR3C2_5bp_10bp_mCMV_1"
## [1] "NR3C2_5bp_10bp_mCMV_2"
## [1] "NR3C2_5bp_10bp_mCMV_3"
## [1] "NR3C2_5bp_10bp_minP_1"
## [1] "NR3C2_5bp_10bp_minP_2"
## [1] "NR3C2_5bp_10bp_minP_3"
## [1] "NR3C2_5bp_21bp_mCMV_1"
## [1] "NR3C2_5bp_21bp_mCMV_2"
## [1] "NR3C2_5bp_21bp_mCMV_3"
## [1] "NR3C2_5bp_21bp_minP_1"
## [1] "NR3C2_5bp_21bp_minP_2"
## [1] "NR3C2_5bp_21bp_minP_3"
## [1] "NR3C2_romanov_NA_10bp_mCMV_NA"
## [1] "NR3C2_romanov_NA_10bp_minP_NA"
## [1] "NR3C2_romanov_NA_21bp_mCMV_NA"
## [1] "NR3C2_romanov_NA_21bp_minP_NA"
## [1] "NR4A1_10bp_10bp_mCMV_1"
## [1] "NR4A1_10bp_10bp_mCMV_2"
## [1] "NR4A1_10bp_10bp_mCMV_3"
## [1] "NR4A1_10bp_10bp_minP_1"
## [1] "NR4A1_10bp_10bp_minP_2"
## [1] "NR4A1_10bp_10bp_minP_3"
## [1] "NR4A1_10bp_21bp_Random_1"
## [1] "NR4A1_10bp_21bp_mCMV_1"
## [1] "NR4A1_10bp_21bp_mCMV_2"
## [1] "NR4A1_10bp_21bp_mCMV_3"
## [1] "NR4A1_10bp_21bp_minP_1"
## [1] "NR4A1_10bp_21bp_minP_2"
## [1] "NR4A1_10bp_21bp_minP_3"
## [1] "NR4A1_5bp_10bp_mCMV_1"
## [1] "NR4A1_5bp_10bp_mCMV_2"
## [1] "NR4A1_5bp_10bp_mCMV_3"
## [1] "NR4A1_5bp_10bp_minP_1"
## [1] "NR4A1_5bp_10bp_minP_2"
## [1] "NR4A1_5bp_10bp_minP_3"
## [1] "NR4A1_5bp_21bp_mCMV_1"
## [1] "NR4A1_5bp_21bp_mCMV_2"
## [1] "NR4A1_5bp_21bp_mCMV_3"
## [1] "NR4A1_5bp_21bp_minP_1"
## [1] "NR4A1_5bp_21bp_minP_2"
## [1] "NR4A1_5bp_21bp_minP_3"
## [1] "NR4A2::RXRA_10bp_10bp_mCMV_1"
## [1] "NR4A2::RXRA_10bp_10bp_mCMV_2"
## [1] "NR4A2::RXRA_10bp_10bp_mCMV_3"
## [1] "NR4A2::RXRA_10bp_10bp_minP_1"
## [1] "NR4A2::RXRA_10bp_10bp_minP_2"
## [1] "NR4A2::RXRA_10bp_10bp_minP_3"
## [1] "NR4A2::RXRA_10bp_21bp_Random_1"
## [1] "NR4A2::RXRA_10bp_21bp_mCMV_1"
## [1] "NR4A2::RXRA_10bp_21bp_mCMV_2"
## [1] "NR4A2::RXRA_10bp_21bp_mCMV_3"
## [1] "NR4A2::RXRA_10bp_21bp_minP_1"
## [1] "NR4A2::RXRA_10bp_21bp_minP_2"
## [1] "NR4A2::RXRA_10bp_21bp_minP_3"
## [1] "NR4A2::RXRA_5bp_10bp_mCMV_1"
## [1] "NR4A2::RXRA_5bp_10bp_mCMV_2"
## [1] "NR4A2::RXRA_5bp_10bp_mCMV_3"
## [1] "NR4A2::RXRA_5bp_10bp_minP_1"
## [1] "NR4A2::RXRA_5bp_10bp_minP_2"
## [1] "NR4A2::RXRA_5bp_10bp_minP_3"
## [1] "NR4A2::RXRA_5bp_21bp_mCMV_1"
## [1] "NR4A2::RXRA_5bp_21bp_mCMV_2"
## [1] "NR4A2::RXRA_5bp_21bp_mCMV_3"
## [1] "NR4A2::RXRA_5bp_21bp_minP_1"
## [1] "NR4A2::RXRA_5bp_21bp_minP_2"
## [1] "NR4A2::RXRA_5bp_21bp_minP_3"
## [1] "NR5A2_10bp_10bp_mCMV_1"
## [1] "NR5A2_10bp_10bp_mCMV_2"
## [1] "NR5A2_10bp_10bp_mCMV_3"
## [1] "NR5A2_10bp_10bp_minP_1"
## [1] "NR5A2_10bp_10bp_minP_2"
## [1] "NR5A2_10bp_10bp_minP_3"
## [1] "NR5A2_10bp_21bp_Random_1"
## [1] "NR5A2_10bp_21bp_mCMV_1"
## [1] "NR5A2_10bp_21bp_mCMV_2"
## [1] "NR5A2_10bp_21bp_mCMV_3"
## [1] "NR5A2_10bp_21bp_minP_1"
## [1] "NR5A2_10bp_21bp_minP_2"
## [1] "NR5A2_10bp_21bp_minP_3"
## [1] "NR5A2_5bp_10bp_mCMV_1"
## [1] "NR5A2_5bp_10bp_mCMV_2"
## [1] "NR5A2_5bp_10bp_mCMV_3"
## [1] "NR5A2_5bp_10bp_minP_1"
## [1] "NR5A2_5bp_10bp_minP_2"
## [1] "NR5A2_5bp_10bp_minP_3"
## [1] "NR5A2_5bp_21bp_mCMV_1"
## [1] "NR5A2_5bp_21bp_mCMV_2"
## [1] "NR5A2_5bp_21bp_mCMV_3"
## [1] "NR5A2_5bp_21bp_minP_1"
## [1] "NR5A2_5bp_21bp_minP_2"
## [1] "NR5A2_5bp_21bp_minP_3"
## [1] "NRF1_10bp_10bp_mCMV_1"
## [1] "NRF1_10bp_10bp_mCMV_2"
## [1] "NRF1_10bp_10bp_mCMV_3"
## [1] "NRF1_10bp_10bp_minP_1"
## [1] "NRF1_10bp_10bp_minP_2"
## [1] "NRF1_10bp_10bp_minP_3"
## [1] "NRF1_10bp_21bp_Random_1"
## [1] "NRF1_10bp_21bp_mCMV_1"
## [1] "NRF1_10bp_21bp_mCMV_2"
## [1] "NRF1_10bp_21bp_mCMV_3"
## [1] "NRF1_10bp_21bp_minP_1"
## [1] "NRF1_10bp_21bp_minP_2"
## [1] "NRF1_10bp_21bp_minP_3"
## [1] "NRF1_5bp_10bp_mCMV_1"
## [1] "NRF1_5bp_10bp_mCMV_2"
## [1] "NRF1_5bp_10bp_mCMV_3"
## [1] "NRF1_5bp_10bp_minP_1"
## [1] "NRF1_5bp_10bp_minP_2"
## [1] "NRF1_5bp_10bp_minP_3"
## [1] "NRF1_5bp_21bp_mCMV_1"
## [1] "NRF1_5bp_21bp_mCMV_2"
## [1] "NRF1_5bp_21bp_mCMV_3"
## [1] "NRF1_5bp_21bp_minP_1"
## [1] "NRF1_5bp_21bp_minP_2"
## [1] "NRF1_5bp_21bp_minP_3"
## [1] "ONECUT1_10bp_10bp_mCMV_1"
## [1] "ONECUT1_10bp_10bp_mCMV_2"
## [1] "ONECUT1_10bp_10bp_mCMV_3"
## [1] "ONECUT1_10bp_10bp_minP_1"
## [1] "ONECUT1_10bp_10bp_minP_2"
## [1] "ONECUT1_10bp_10bp_minP_3"
## [1] "ONECUT1_10bp_21bp_Random_1"
## [1] "ONECUT1_10bp_21bp_mCMV_1"
## [1] "ONECUT1_10bp_21bp_mCMV_2"
## [1] "ONECUT1_10bp_21bp_mCMV_3"
## [1] "ONECUT1_10bp_21bp_minP_1"
## [1] "ONECUT1_10bp_21bp_minP_2"
## [1] "ONECUT1_10bp_21bp_minP_3"
## [1] "ONECUT1_5bp_10bp_mCMV_1"
## [1] "ONECUT1_5bp_10bp_mCMV_2"
## [1] "ONECUT1_5bp_10bp_mCMV_3"
## [1] "ONECUT1_5bp_10bp_minP_1"
## [1] "ONECUT1_5bp_10bp_minP_2"
## [1] "ONECUT1_5bp_10bp_minP_3"
## [1] "ONECUT1_5bp_21bp_mCMV_1"
## [1] "ONECUT1_5bp_21bp_mCMV_2"
## [1] "ONECUT1_5bp_21bp_mCMV_3"
## [1] "ONECUT1_5bp_21bp_minP_1"
## [1] "ONECUT1_5bp_21bp_minP_2"
## [1] "ONECUT1_5bp_21bp_minP_3"
## [1] "ONECUT1_romanov_NA_10bp_mCMV_NA"
## [1] "ONECUT1_romanov_NA_10bp_minP_NA"
## [1] "ONECUT1_romanov_NA_21bp_mCMV_NA"
## [1] "ONECUT1_romanov_NA_21bp_minP_NA"
## [1] "OTX1_10bp_10bp_hBGm_1"
## [1] "OTX1_10bp_10bp_hBGm_2"
## [1] "OTX1_10bp_10bp_hBGm_3"
## [1] "OTX1_10bp_10bp_mCMV_1"
## [1] "OTX1_10bp_10bp_mCMV_2"
## [1] "OTX1_10bp_10bp_mCMV_3"
## [1] "OTX1_10bp_10bp_minP_1"
## [1] "OTX1_10bp_10bp_minP_2"
## [1] "OTX1_10bp_10bp_minP_3"
## [1] "OTX1_10bp_21bp_Random_1"
## [1] "OTX1_10bp_21bp_hBGm_1"
## [1] "OTX1_10bp_21bp_hBGm_2"
## [1] "OTX1_10bp_21bp_hBGm_3"
## [1] "OTX1_10bp_21bp_mCMV_1"
## [1] "OTX1_10bp_21bp_mCMV_2"
## [1] "OTX1_10bp_21bp_mCMV_3"
## [1] "OTX1_10bp_21bp_minP_1"
## [1] "OTX1_10bp_21bp_minP_2"
## [1] "OTX1_10bp_21bp_minP_3"
## [1] "OTX1_5bp_10bp_hBGm_1"
## [1] "OTX1_5bp_10bp_hBGm_2"
## [1] "OTX1_5bp_10bp_hBGm_3"
## [1] "OTX1_5bp_10bp_mCMV_1"
## [1] "OTX1_5bp_10bp_mCMV_2"
## [1] "OTX1_5bp_10bp_mCMV_3"
## [1] "OTX1_5bp_10bp_minP_1"
## [1] "OTX1_5bp_10bp_minP_2"
## [1] "OTX1_5bp_10bp_minP_3"
## [1] "OTX1_5bp_21bp_hBGm_1"
## [1] "OTX1_5bp_21bp_hBGm_2"
## [1] "OTX1_5bp_21bp_hBGm_3"
## [1] "OTX1_5bp_21bp_mCMV_1"
## [1] "OTX1_5bp_21bp_mCMV_2"
## [1] "OTX1_5bp_21bp_mCMV_3"
## [1] "OTX1_5bp_21bp_minP_1"
## [1] "OTX1_5bp_21bp_minP_2"
## [1] "OTX1_5bp_21bp_minP_3"
## [1] "PAX6_10bp_10bp_hBGm_1"
## [1] "PAX6_10bp_10bp_hBGm_2"
## [1] "PAX6_10bp_10bp_hBGm_3"
## [1] "PAX6_10bp_10bp_mCMV_1"
## [1] "PAX6_10bp_10bp_mCMV_2"
## [1] "PAX6_10bp_10bp_mCMV_3"
## [1] "PAX6_10bp_10bp_minP_1"
## [1] "PAX6_10bp_10bp_minP_2"
## [1] "PAX6_10bp_10bp_minP_3"
## [1] "PAX6_10bp_21bp_Random_1"
## [1] "PAX6_10bp_21bp_hBGm_1"
## [1] "PAX6_10bp_21bp_hBGm_2"
## [1] "PAX6_10bp_21bp_hBGm_3"
## [1] "PAX6_10bp_21bp_mCMV_1"
## [1] "PAX6_10bp_21bp_mCMV_2"
## [1] "PAX6_10bp_21bp_mCMV_3"
## [1] "PAX6_10bp_21bp_minP_1"
## [1] "PAX6_10bp_21bp_minP_2"
## [1] "PAX6_10bp_21bp_minP_3"
## [1] "PAX6_5bp_10bp_hBGm_1"
## [1] "PAX6_5bp_10bp_hBGm_2"
## [1] "PAX6_5bp_10bp_hBGm_3"
## [1] "PAX6_5bp_10bp_mCMV_1"
## [1] "PAX6_5bp_10bp_mCMV_2"
## [1] "PAX6_5bp_10bp_mCMV_3"
## [1] "PAX6_5bp_10bp_minP_1"
## [1] "PAX6_5bp_10bp_minP_2"
## [1] "PAX6_5bp_10bp_minP_3"
## [1] "PAX6_5bp_21bp_hBGm_1"
## [1] "PAX6_5bp_21bp_hBGm_2"
## [1] "PAX6_5bp_21bp_hBGm_3"
## [1] "PAX6_5bp_21bp_mCMV_1"
## [1] "PAX6_5bp_21bp_mCMV_2"
## [1] "PAX6_5bp_21bp_mCMV_3"
## [1] "PAX6_5bp_21bp_minP_1"
## [1] "PAX6_5bp_21bp_minP_2"
## [1] "PAX6_5bp_21bp_minP_3"
## [1] "PAX6_romanov_NA_10bp_mCMV_NA"
## [1] "PAX6_romanov_NA_10bp_minP_NA"
## [1] "PAX6_romanov_NA_21bp_mCMV_NA"
## [1] "PAX6_romanov_NA_21bp_minP_NA"
## [1] "PGR_10bp_10bp_mCMV_1"
## [1] "PGR_10bp_10bp_mCMV_2"
## [1] "PGR_10bp_10bp_mCMV_3"
## [1] "PGR_10bp_10bp_minP_1"
## [1] "PGR_10bp_10bp_minP_2"
## [1] "PGR_10bp_10bp_minP_3"
## [1] "PGR_10bp_21bp_Random_1"
## [1] "PGR_10bp_21bp_mCMV_1"
## [1] "PGR_10bp_21bp_mCMV_2"
## [1] "PGR_10bp_21bp_mCMV_3"
## [1] "PGR_10bp_21bp_minP_1"
## [1] "PGR_10bp_21bp_minP_2"
## [1] "PGR_10bp_21bp_minP_3"
## [1] "PGR_5bp_10bp_mCMV_1"
## [1] "PGR_5bp_10bp_mCMV_2"
## [1] "PGR_5bp_10bp_mCMV_3"
## [1] "PGR_5bp_10bp_minP_1"
## [1] "PGR_5bp_10bp_minP_2"
## [1] "PGR_5bp_10bp_minP_3"
## [1] "PGR_5bp_21bp_mCMV_1"
## [1] "PGR_5bp_21bp_mCMV_2"
## [1] "PGR_5bp_21bp_mCMV_3"
## [1] "PGR_5bp_21bp_minP_1"
## [1] "PGR_5bp_21bp_minP_2"
## [1] "PGR_5bp_21bp_minP_3"
## [1] "POU2F1_10bp_10bp_mCMV_1"
## [1] "POU2F1_10bp_10bp_mCMV_2"
## [1] "POU2F1_10bp_10bp_mCMV_3"
## [1] "POU2F1_10bp_10bp_minP_1"
## [1] "POU2F1_10bp_10bp_minP_2"
## [1] "POU2F1_10bp_10bp_minP_3"
## [1] "POU2F1_10bp_21bp_Random_1"
## [1] "POU2F1_10bp_21bp_mCMV_1"
## [1] "POU2F1_10bp_21bp_mCMV_2"
## [1] "POU2F1_10bp_21bp_mCMV_3"
## [1] "POU2F1_10bp_21bp_minP_1"
## [1] "POU2F1_10bp_21bp_minP_2"
## [1] "POU2F1_10bp_21bp_minP_3"
## [1] "POU2F1_5bp_10bp_mCMV_1"
## [1] "POU2F1_5bp_10bp_mCMV_2"
## [1] "POU2F1_5bp_10bp_mCMV_3"
## [1] "POU2F1_5bp_10bp_minP_1"
## [1] "POU2F1_5bp_10bp_minP_2"
## [1] "POU2F1_5bp_10bp_minP_3"
## [1] "POU2F1_5bp_21bp_mCMV_1"
## [1] "POU2F1_5bp_21bp_mCMV_2"
## [1] "POU2F1_5bp_21bp_mCMV_3"
## [1] "POU2F1_5bp_21bp_minP_1"
## [1] "POU2F1_5bp_21bp_minP_2"
## [1] "POU2F1_5bp_21bp_minP_3"
## [1] "POU2F1_romanov_NA_10bp_mCMV_NA"
## [1] "POU2F1_romanov_NA_10bp_minP_NA"
## [1] "POU2F1_romanov_NA_21bp_mCMV_NA"
## [1] "POU2F1_romanov_NA_21bp_minP_NA"
## [1] "POU5F1::SOX2_10bp_10bp_mCMV_1"
## [1] "POU5F1::SOX2_10bp_10bp_mCMV_2"
## [1] "POU5F1::SOX2_10bp_10bp_mCMV_3"
## [1] "POU5F1::SOX2_10bp_10bp_minP_1"
## [1] "POU5F1::SOX2_10bp_10bp_minP_2"
## [1] "POU5F1::SOX2_10bp_10bp_minP_3"
## [1] "POU5F1::SOX2_10bp_21bp_Random_1"
## [1] "POU5F1::SOX2_10bp_21bp_mCMV_1"
## [1] "POU5F1::SOX2_10bp_21bp_mCMV_2"
## [1] "POU5F1::SOX2_10bp_21bp_mCMV_3"
## [1] "POU5F1::SOX2_10bp_21bp_minP_1"
## [1] "POU5F1::SOX2_10bp_21bp_minP_2"
## [1] "POU5F1::SOX2_10bp_21bp_minP_3"
## [1] "POU5F1::SOX2_5bp_10bp_mCMV_1"
## [1] "POU5F1::SOX2_5bp_10bp_mCMV_2"
## [1] "POU5F1::SOX2_5bp_10bp_mCMV_3"
## [1] "POU5F1::SOX2_5bp_10bp_minP_1"
## [1] "POU5F1::SOX2_5bp_10bp_minP_2"
## [1] "POU5F1::SOX2_5bp_10bp_minP_3"
## [1] "POU5F1::SOX2_5bp_21bp_mCMV_1"
## [1] "POU5F1::SOX2_5bp_21bp_mCMV_2"
## [1] "POU5F1::SOX2_5bp_21bp_mCMV_3"
## [1] "POU5F1::SOX2_5bp_21bp_minP_1"
## [1] "POU5F1::SOX2_5bp_21bp_minP_2"
## [1] "POU5F1::SOX2_5bp_21bp_minP_3"
## [1] "POU5F1_10bp_10bp_mCMV_1"
## [1] "POU5F1_10bp_10bp_mCMV_2"
## [1] "POU5F1_10bp_10bp_mCMV_3"
## [1] "POU5F1_10bp_10bp_minP_1"
## [1] "POU5F1_10bp_10bp_minP_2"
## [1] "POU5F1_10bp_10bp_minP_3"
## [1] "POU5F1_10bp_21bp_Random_1"
## [1] "POU5F1_10bp_21bp_mCMV_1"
## [1] "POU5F1_10bp_21bp_mCMV_2"
## [1] "POU5F1_10bp_21bp_mCMV_3"
## [1] "POU5F1_10bp_21bp_minP_1"
## [1] "POU5F1_10bp_21bp_minP_2"
## [1] "POU5F1_10bp_21bp_minP_3"
## [1] "POU5F1_5bp_10bp_mCMV_1"
## [1] "POU5F1_5bp_10bp_mCMV_2"
## [1] "POU5F1_5bp_10bp_mCMV_3"
## [1] "POU5F1_5bp_10bp_minP_1"
## [1] "POU5F1_5bp_10bp_minP_2"
## [1] "POU5F1_5bp_10bp_minP_3"
## [1] "POU5F1_5bp_21bp_mCMV_1"
## [1] "POU5F1_5bp_21bp_mCMV_2"
## [1] "POU5F1_5bp_21bp_mCMV_3"
## [1] "POU5F1_5bp_21bp_minP_1"
## [1] "POU5F1_5bp_21bp_minP_2"
## [1] "POU5F1_5bp_21bp_minP_3"
## [1] "PPARA::RXRA_10bp_10bp_mCMV_1"
## [1] "PPARA::RXRA_10bp_10bp_mCMV_2"
## [1] "PPARA::RXRA_10bp_10bp_mCMV_3"
## [1] "PPARA::RXRA_10bp_10bp_minP_1"
## [1] "PPARA::RXRA_10bp_10bp_minP_2"
## [1] "PPARA::RXRA_10bp_10bp_minP_3"
## [1] "PPARA::RXRA_10bp_21bp_Random_1"
## [1] "PPARA::RXRA_10bp_21bp_mCMV_1"
## [1] "PPARA::RXRA_10bp_21bp_mCMV_2"
## [1] "PPARA::RXRA_10bp_21bp_mCMV_3"
## [1] "PPARA::RXRA_10bp_21bp_minP_1"
## [1] "PPARA::RXRA_10bp_21bp_minP_2"
## [1] "PPARA::RXRA_10bp_21bp_minP_3"
## [1] "PPARA::RXRA_5bp_10bp_mCMV_1"
## [1] "PPARA::RXRA_5bp_10bp_mCMV_2"
## [1] "PPARA::RXRA_5bp_10bp_mCMV_3"
## [1] "PPARA::RXRA_5bp_10bp_minP_1"
## [1] "PPARA::RXRA_5bp_10bp_minP_2"
## [1] "PPARA::RXRA_5bp_10bp_minP_3"
## [1] "PPARA::RXRA_5bp_21bp_mCMV_1"
## [1] "PPARA::RXRA_5bp_21bp_mCMV_2"
## [1] "PPARA::RXRA_5bp_21bp_mCMV_3"
## [1] "PPARA::RXRA_5bp_21bp_minP_1"
## [1] "PPARA::RXRA_5bp_21bp_minP_2"
## [1] "PPARA::RXRA_5bp_21bp_minP_3"
## [1] "PPARA::RXRA_romanov_NA_10bp_mCMV_NA"
## [1] "PPARA::RXRA_romanov_NA_10bp_minP_NA"
## [1] "PPARA::RXRA_romanov_NA_21bp_mCMV_NA"
## [1] "PPARA::RXRA_romanov_NA_21bp_minP_NA"
## [1] "PPARG::PPARG_TF-seq_NA_10bp_mCMV_NA"
## [1] "PPARG::PPARG_TF-seq_NA_10bp_minP_NA"
## [1] "PPARG::PPARG_TF-seq_NA_21bp_mCMV_NA"
## [1] "PPARG::PPARG_TF-seq_NA_21bp_minP_NA"
## [1] "PPARG::RXRA_10bp_10bp_mCMV_1"
## [1] "PPARG::RXRA_10bp_10bp_mCMV_2"
## [1] "PPARG::RXRA_10bp_10bp_mCMV_3"
## [1] "PPARG::RXRA_10bp_10bp_minP_1"
## [1] "PPARG::RXRA_10bp_10bp_minP_2"
## [1] "PPARG::RXRA_10bp_10bp_minP_3"
## [1] "PPARG::RXRA_10bp_21bp_Random_1"
## [1] "PPARG::RXRA_10bp_21bp_mCMV_1"
## [1] "PPARG::RXRA_10bp_21bp_mCMV_2"
## [1] "PPARG::RXRA_10bp_21bp_mCMV_3"
## [1] "PPARG::RXRA_10bp_21bp_minP_1"
## [1] "PPARG::RXRA_10bp_21bp_minP_2"
## [1] "PPARG::RXRA_10bp_21bp_minP_3"
## [1] "PPARG::RXRA_2_TF-seq_NA_10bp_mCMV_NA"
## [1] "PPARG::RXRA_2_TF-seq_NA_10bp_minP_NA"
## [1] "PPARG::RXRA_2_TF-seq_NA_21bp_mCMV_NA"
## [1] "PPARG::RXRA_2_TF-seq_NA_21bp_minP_NA"
## [1] "PPARG::RXRA_5bp_10bp_mCMV_1"
## [1] "PPARG::RXRA_5bp_10bp_mCMV_2"
## [1] "PPARG::RXRA_5bp_10bp_mCMV_3"
## [1] "PPARG::RXRA_5bp_10bp_minP_1"
## [1] "PPARG::RXRA_5bp_10bp_minP_2"
## [1] "PPARG::RXRA_5bp_10bp_minP_3"
## [1] "PPARG::RXRA_5bp_21bp_mCMV_1"
## [1] "PPARG::RXRA_5bp_21bp_mCMV_2"
## [1] "PPARG::RXRA_5bp_21bp_mCMV_3"
## [1] "PPARG::RXRA_5bp_21bp_minP_1"
## [1] "PPARG::RXRA_5bp_21bp_minP_2"
## [1] "PPARG::RXRA_5bp_21bp_minP_3"
## [1] "PPARG::RXRA_TF-seq_NA_10bp_mCMV_NA"
## [1] "PPARG::RXRA_TF-seq_NA_10bp_minP_NA"
## [1] "PPARG::RXRA_TF-seq_NA_21bp_mCMV_NA"
## [1] "PPARG::RXRA_TF-seq_NA_21bp_minP_NA"
## [1] "RANDOM1_10bp_10bp_hBGm_1"
## [1] "RANDOM1_10bp_10bp_hBGm_2"
## [1] "RANDOM1_10bp_10bp_hBGm_3"
## [1] "RANDOM1_10bp_10bp_mCMV_1"
## [1] "RANDOM1_10bp_10bp_mCMV_2"
## [1] "RANDOM1_10bp_10bp_mCMV_3"
## [1] "RANDOM1_10bp_10bp_minP_1"
## [1] "RANDOM1_10bp_10bp_minP_2"
## [1] "RANDOM1_10bp_10bp_minP_3"
## [1] "RANDOM1_10bp_21bp_Random_1"
## [1] "RANDOM1_10bp_21bp_hBGm_1"
## [1] "RANDOM1_10bp_21bp_hBGm_2"
## [1] "RANDOM1_10bp_21bp_hBGm_3"
## [1] "RANDOM1_10bp_21bp_mCMV_1"
## [1] "RANDOM1_10bp_21bp_mCMV_2"
## [1] "RANDOM1_10bp_21bp_mCMV_3"
## [1] "RANDOM1_10bp_21bp_minP_1"
## [1] "RANDOM1_10bp_21bp_minP_2"
## [1] "RANDOM1_10bp_21bp_minP_3"
## [1] "RANDOM1_5bp_10bp_hBGm_1"
## [1] "RANDOM1_5bp_10bp_hBGm_2"
## [1] "RANDOM1_5bp_10bp_hBGm_3"
## [1] "RANDOM1_5bp_10bp_mCMV_1"
## [1] "RANDOM1_5bp_10bp_mCMV_2"
## [1] "RANDOM1_5bp_10bp_mCMV_3"
## [1] "RANDOM1_5bp_10bp_minP_1"
## [1] "RANDOM1_5bp_10bp_minP_2"
## [1] "RANDOM1_5bp_10bp_minP_3"
## [1] "RANDOM1_5bp_21bp_hBGm_1"
## [1] "RANDOM1_5bp_21bp_hBGm_2"
## [1] "RANDOM1_5bp_21bp_hBGm_3"
## [1] "RANDOM1_5bp_21bp_mCMV_1"
## [1] "RANDOM1_5bp_21bp_mCMV_2"
## [1] "RANDOM1_5bp_21bp_mCMV_3"
## [1] "RANDOM1_5bp_21bp_minP_1"
## [1] "RANDOM1_5bp_21bp_minP_2"
## [1] "RANDOM1_5bp_21bp_minP_3"
## [1] "RANDOM2_10bp_10bp_hBGm_1"
## [1] "RANDOM2_10bp_10bp_hBGm_2"
## [1] "RANDOM2_10bp_10bp_hBGm_3"
## [1] "RANDOM2_10bp_10bp_mCMV_1"
## [1] "RANDOM2_10bp_10bp_mCMV_2"
## [1] "RANDOM2_10bp_10bp_mCMV_3"
## [1] "RANDOM2_10bp_10bp_minP_1"
## [1] "RANDOM2_10bp_10bp_minP_2"
## [1] "RANDOM2_10bp_10bp_minP_3"
## [1] "RANDOM2_10bp_21bp_Random_1"
## [1] "RANDOM2_10bp_21bp_hBGm_1"
## [1] "RANDOM2_10bp_21bp_hBGm_2"
## [1] "RANDOM2_10bp_21bp_hBGm_3"
## [1] "RANDOM2_10bp_21bp_mCMV_1"
## [1] "RANDOM2_10bp_21bp_mCMV_2"
## [1] "RANDOM2_10bp_21bp_mCMV_3"
## [1] "RANDOM2_10bp_21bp_minP_1"
## [1] "RANDOM2_10bp_21bp_minP_2"
## [1] "RANDOM2_10bp_21bp_minP_3"
## [1] "RANDOM2_5bp_10bp_hBGm_1"
## [1] "RANDOM2_5bp_10bp_hBGm_2"
## [1] "RANDOM2_5bp_10bp_hBGm_3"
## [1] "RANDOM2_5bp_10bp_mCMV_1"
## [1] "RANDOM2_5bp_10bp_mCMV_2"
## [1] "RANDOM2_5bp_10bp_mCMV_3"
## [1] "RANDOM2_5bp_10bp_minP_1"
## [1] "RANDOM2_5bp_10bp_minP_2"
## [1] "RANDOM2_5bp_10bp_minP_3"
## [1] "RANDOM2_5bp_21bp_hBGm_1"
## [1] "RANDOM2_5bp_21bp_hBGm_2"
## [1] "RANDOM2_5bp_21bp_hBGm_3"
## [1] "RANDOM2_5bp_21bp_mCMV_1"
## [1] "RANDOM2_5bp_21bp_mCMV_2"
## [1] "RANDOM2_5bp_21bp_mCMV_3"
## [1] "RANDOM2_5bp_21bp_minP_1"
## [1] "RANDOM2_5bp_21bp_minP_2"
## [1] "RANDOM2_5bp_21bp_minP_3"
## [1] "RANDOM3_10bp_10bp_hBGm_1"
## [1] "RANDOM3_10bp_10bp_hBGm_2"
## [1] "RANDOM3_10bp_10bp_hBGm_3"
## [1] "RANDOM3_10bp_10bp_mCMV_1"
## [1] "RANDOM3_10bp_10bp_mCMV_2"
## [1] "RANDOM3_10bp_10bp_mCMV_3"
## [1] "RANDOM3_10bp_10bp_minP_1"
## [1] "RANDOM3_10bp_10bp_minP_2"
## [1] "RANDOM3_10bp_10bp_minP_3"
## [1] "RANDOM3_10bp_21bp_Random_1"
## [1] "RANDOM3_10bp_21bp_hBGm_1"
## [1] "RANDOM3_10bp_21bp_hBGm_2"
## [1] "RANDOM3_10bp_21bp_hBGm_3"
## [1] "RANDOM3_10bp_21bp_mCMV_1"
## [1] "RANDOM3_10bp_21bp_mCMV_2"
## [1] "RANDOM3_10bp_21bp_mCMV_3"
## [1] "RANDOM3_10bp_21bp_minP_1"
## [1] "RANDOM3_10bp_21bp_minP_2"
## [1] "RANDOM3_10bp_21bp_minP_3"
## [1] "RANDOM3_5bp_10bp_hBGm_1"
## [1] "RANDOM3_5bp_10bp_hBGm_2"
## [1] "RANDOM3_5bp_10bp_hBGm_3"
## [1] "RANDOM3_5bp_10bp_mCMV_1"
## [1] "RANDOM3_5bp_10bp_mCMV_2"
## [1] "RANDOM3_5bp_10bp_mCMV_3"
## [1] "RANDOM3_5bp_10bp_minP_1"
## [1] "RANDOM3_5bp_10bp_minP_2"
## [1] "RANDOM3_5bp_10bp_minP_3"
## [1] "RANDOM3_5bp_21bp_hBGm_1"
## [1] "RANDOM3_5bp_21bp_hBGm_2"
## [1] "RANDOM3_5bp_21bp_hBGm_3"
## [1] "RANDOM3_5bp_21bp_mCMV_1"
## [1] "RANDOM3_5bp_21bp_mCMV_2"
## [1] "RANDOM3_5bp_21bp_mCMV_3"
## [1] "RANDOM3_5bp_21bp_minP_1"
## [1] "RANDOM3_5bp_21bp_minP_2"
## [1] "RANDOM3_5bp_21bp_minP_3"
## [1] "RARA:RXRA_10bp_10bp_mCMV_1"
## [1] "RARA:RXRA_10bp_10bp_mCMV_2"
## [1] "RARA:RXRA_10bp_10bp_mCMV_3"
## [1] "RARA:RXRA_10bp_10bp_minP_1"
## [1] "RARA:RXRA_10bp_10bp_minP_2"
## [1] "RARA:RXRA_10bp_10bp_minP_3"
## [1] "RARA:RXRA_10bp_21bp_Random_1"
## [1] "RARA:RXRA_10bp_21bp_mCMV_1"
## [1] "RARA:RXRA_10bp_21bp_mCMV_2"
## [1] "RARA:RXRA_10bp_21bp_mCMV_3"
## [1] "RARA:RXRA_10bp_21bp_minP_1"
## [1] "RARA:RXRA_10bp_21bp_minP_2"
## [1] "RARA:RXRA_10bp_21bp_minP_3"
## [1] "RARA:RXRA_5bp_10bp_mCMV_1"
## [1] "RARA:RXRA_5bp_10bp_mCMV_2"
## [1] "RARA:RXRA_5bp_10bp_mCMV_3"
## [1] "RARA:RXRA_5bp_10bp_minP_1"
## [1] "RARA:RXRA_5bp_10bp_minP_2"
## [1] "RARA:RXRA_5bp_10bp_minP_3"
## [1] "RARA:RXRA_5bp_21bp_mCMV_1"
## [1] "RARA:RXRA_5bp_21bp_mCMV_2"
## [1] "RARA:RXRA_5bp_21bp_mCMV_3"
## [1] "RARA:RXRA_5bp_21bp_minP_1"
## [1] "RARA:RXRA_5bp_21bp_minP_2"
## [1] "RARA:RXRA_5bp_21bp_minP_3"
## [1] "RARA:RXRA_TF-seq_NA_10bp_mCMV_NA"
## [1] "RARA:RXRA_TF-seq_NA_10bp_minP_NA"
## [1] "RARA:RXRA_TF-seq_NA_21bp_mCMV_NA"
## [1] "RARA:RXRA_TF-seq_NA_21bp_minP_NA"
## [1] "RARA_10bp_10bp_hBGm_1"
## [1] "RARA_10bp_10bp_hBGm_2"
## [1] "RARA_10bp_10bp_hBGm_3"
## [1] "RARA_10bp_10bp_mCMV_1"
## [1] "RARA_10bp_10bp_mCMV_2"
## [1] "RARA_10bp_10bp_mCMV_3"
## [1] "RARA_10bp_10bp_minP_1"
## [1] "RARA_10bp_10bp_minP_2"
## [1] "RARA_10bp_10bp_minP_3"
## [1] "RARA_10bp_21bp_Random_1"
## [1] "RARA_10bp_21bp_hBGm_1"
## [1] "RARA_10bp_21bp_hBGm_2"
## [1] "RARA_10bp_21bp_hBGm_3"
## [1] "RARA_10bp_21bp_mCMV_1"
## [1] "RARA_10bp_21bp_mCMV_2"
## [1] "RARA_10bp_21bp_mCMV_3"
## [1] "RARA_10bp_21bp_minP_1"
## [1] "RARA_10bp_21bp_minP_2"
## [1] "RARA_10bp_21bp_minP_3"
## [1] "RARA_5bp_10bp_hBGm_1"
## [1] "RARA_5bp_10bp_hBGm_2"
## [1] "RARA_5bp_10bp_hBGm_3"
## [1] "RARA_5bp_10bp_mCMV_1"
## [1] "RARA_5bp_10bp_mCMV_2"
## [1] "RARA_5bp_10bp_mCMV_3"
## [1] "RARA_5bp_10bp_minP_1"
## [1] "RARA_5bp_10bp_minP_2"
## [1] "RARA_5bp_10bp_minP_3"
## [1] "RARA_5bp_21bp_hBGm_1"
## [1] "RARA_5bp_21bp_hBGm_2"
## [1] "RARA_5bp_21bp_hBGm_3"
## [1] "RARA_5bp_21bp_mCMV_1"
## [1] "RARA_5bp_21bp_mCMV_2"
## [1] "RARA_5bp_21bp_mCMV_3"
## [1] "RARA_5bp_21bp_minP_1"
## [1] "RARA_5bp_21bp_minP_2"
## [1] "RARA_5bp_21bp_minP_3"
## [1] "RARA_TF-seq_NA_10bp_mCMV_NA"
## [1] "RARA_TF-seq_NA_10bp_minP_NA"
## [1] "RARA_TF-seq_NA_21bp_mCMV_NA"
## [1] "RARA_TF-seq_NA_21bp_minP_NA"
## [1] "RBPJ_10bp_10bp_hBGm_1"
## [1] "RBPJ_10bp_10bp_hBGm_2"
## [1] "RBPJ_10bp_10bp_hBGm_3"
## [1] "RBPJ_10bp_10bp_mCMV_1"
## [1] "RBPJ_10bp_10bp_mCMV_2"
## [1] "RBPJ_10bp_10bp_mCMV_3"
## [1] "RBPJ_10bp_10bp_minP_1"
## [1] "RBPJ_10bp_10bp_minP_2"
## [1] "RBPJ_10bp_10bp_minP_3"
## [1] "RBPJ_10bp_21bp_Random_1"
## [1] "RBPJ_10bp_21bp_hBGm_1"
## [1] "RBPJ_10bp_21bp_hBGm_2"
## [1] "RBPJ_10bp_21bp_hBGm_3"
## [1] "RBPJ_10bp_21bp_mCMV_1"
## [1] "RBPJ_10bp_21bp_mCMV_2"
## [1] "RBPJ_10bp_21bp_mCMV_3"
## [1] "RBPJ_10bp_21bp_minP_1"
## [1] "RBPJ_10bp_21bp_minP_2"
## [1] "RBPJ_10bp_21bp_minP_3"
## [1] "RBPJ_5bp_10bp_hBGm_1"
## [1] "RBPJ_5bp_10bp_hBGm_2"
## [1] "RBPJ_5bp_10bp_hBGm_3"
## [1] "RBPJ_5bp_10bp_mCMV_1"
## [1] "RBPJ_5bp_10bp_mCMV_2"
## [1] "RBPJ_5bp_10bp_mCMV_3"
## [1] "RBPJ_5bp_10bp_minP_1"
## [1] "RBPJ_5bp_10bp_minP_2"
## [1] "RBPJ_5bp_10bp_minP_3"
## [1] "RBPJ_5bp_21bp_hBGm_1"
## [1] "RBPJ_5bp_21bp_hBGm_2"
## [1] "RBPJ_5bp_21bp_hBGm_3"
## [1] "RBPJ_5bp_21bp_mCMV_1"
## [1] "RBPJ_5bp_21bp_mCMV_2"
## [1] "RBPJ_5bp_21bp_mCMV_3"
## [1] "RBPJ_5bp_21bp_minP_1"
## [1] "RBPJ_5bp_21bp_minP_2"
## [1] "RBPJ_5bp_21bp_minP_3"
## [1] "RBPJ_TF-seq_NA_10bp_mCMV_NA"
## [1] "RBPJ_TF-seq_NA_10bp_minP_NA"
## [1] "RBPJ_TF-seq_NA_21bp_mCMV_NA"
## [1] "RBPJ_TF-seq_NA_21bp_minP_NA"
## [1] "REL_10bp_10bp_mCMV_1"
## [1] "REL_10bp_10bp_mCMV_2"
## [1] "REL_10bp_10bp_mCMV_3"
## [1] "REL_10bp_10bp_minP_1"
## [1] "REL_10bp_10bp_minP_2"
## [1] "REL_10bp_10bp_minP_3"
## [1] "REL_10bp_21bp_Random_1"
## [1] "REL_10bp_21bp_mCMV_1"
## [1] "REL_10bp_21bp_mCMV_2"
## [1] "REL_10bp_21bp_mCMV_3"
## [1] "REL_10bp_21bp_minP_1"
## [1] "REL_10bp_21bp_minP_2"
## [1] "REL_10bp_21bp_minP_3"
## [1] "REL_5bp_10bp_mCMV_1"
## [1] "REL_5bp_10bp_mCMV_2"
## [1] "REL_5bp_10bp_mCMV_3"
## [1] "REL_5bp_10bp_minP_1"
## [1] "REL_5bp_10bp_minP_2"
## [1] "REL_5bp_10bp_minP_3"
## [1] "REL_5bp_21bp_mCMV_1"
## [1] "REL_5bp_21bp_mCMV_2"
## [1] "REL_5bp_21bp_mCMV_3"
## [1] "REL_5bp_21bp_minP_1"
## [1] "REL_5bp_21bp_minP_2"
## [1] "REL_5bp_21bp_minP_3"
## [1] "REL_TF-seq_NA_10bp_mCMV_NA"
## [1] "REL_TF-seq_NA_10bp_minP_NA"
## [1] "REL_TF-seq_NA_21bp_mCMV_NA"
## [1] "REL_TF-seq_NA_21bp_minP_NA"
## [1] "RFX1_10bp_10bp_mCMV_1"
## [1] "RFX1_10bp_10bp_mCMV_2"
## [1] "RFX1_10bp_10bp_mCMV_3"
## [1] "RFX1_10bp_10bp_minP_1"
## [1] "RFX1_10bp_10bp_minP_2"
## [1] "RFX1_10bp_10bp_minP_3"
## [1] "RFX1_10bp_21bp_Random_1"
## [1] "RFX1_10bp_21bp_mCMV_1"
## [1] "RFX1_10bp_21bp_mCMV_2"
## [1] "RFX1_10bp_21bp_mCMV_3"
## [1] "RFX1_10bp_21bp_minP_1"
## [1] "RFX1_10bp_21bp_minP_2"
## [1] "RFX1_10bp_21bp_minP_3"
## [1] "RFX1_5bp_10bp_mCMV_1"
## [1] "RFX1_5bp_10bp_mCMV_2"
## [1] "RFX1_5bp_10bp_mCMV_3"
## [1] "RFX1_5bp_10bp_minP_1"
## [1] "RFX1_5bp_10bp_minP_2"
## [1] "RFX1_5bp_10bp_minP_3"
## [1] "RFX1_5bp_21bp_mCMV_1"
## [1] "RFX1_5bp_21bp_mCMV_2"
## [1] "RFX1_5bp_21bp_mCMV_3"
## [1] "RFX1_5bp_21bp_minP_1"
## [1] "RFX1_5bp_21bp_minP_2"
## [1] "RFX1_5bp_21bp_minP_3"
## [1] "RORA_10bp_10bp_mCMV_1"
## [1] "RORA_10bp_10bp_mCMV_2"
## [1] "RORA_10bp_10bp_mCMV_3"
## [1] "RORA_10bp_10bp_minP_1"
## [1] "RORA_10bp_10bp_minP_2"
## [1] "RORA_10bp_10bp_minP_3"
## [1] "RORA_10bp_21bp_Random_1"
## [1] "RORA_10bp_21bp_mCMV_1"
## [1] "RORA_10bp_21bp_mCMV_2"
## [1] "RORA_10bp_21bp_mCMV_3"
## [1] "RORA_10bp_21bp_minP_1"
## [1] "RORA_10bp_21bp_minP_2"
## [1] "RORA_10bp_21bp_minP_3"
## [1] "RORA_5bp_10bp_mCMV_1"
## [1] "RORA_5bp_10bp_mCMV_2"
## [1] "RORA_5bp_10bp_mCMV_3"
## [1] "RORA_5bp_10bp_minP_1"
## [1] "RORA_5bp_10bp_minP_2"
## [1] "RORA_5bp_10bp_minP_3"
## [1] "RORA_5bp_21bp_mCMV_1"
## [1] "RORA_5bp_21bp_mCMV_2"
## [1] "RORA_5bp_21bp_mCMV_3"
## [1] "RORA_5bp_21bp_minP_1"
## [1] "RORA_5bp_21bp_minP_2"
## [1] "RORA_5bp_21bp_minP_3"
## [1] "RORA_TF-seq_NA_10bp_mCMV_NA"
## [1] "RORA_TF-seq_NA_10bp_minP_NA"
## [1] "RORA_TF-seq_NA_21bp_mCMV_NA"
## [1] "RORA_TF-seq_NA_21bp_minP_NA"
## [1] "RUNX2_10bp_10bp_mCMV_1"
## [1] "RUNX2_10bp_10bp_mCMV_2"
## [1] "RUNX2_10bp_10bp_mCMV_3"
## [1] "RUNX2_10bp_10bp_minP_1"
## [1] "RUNX2_10bp_10bp_minP_2"
## [1] "RUNX2_10bp_10bp_minP_3"
## [1] "RUNX2_10bp_21bp_Random_1"
## [1] "RUNX2_10bp_21bp_mCMV_1"
## [1] "RUNX2_10bp_21bp_mCMV_2"
## [1] "RUNX2_10bp_21bp_mCMV_3"
## [1] "RUNX2_10bp_21bp_minP_1"
## [1] "RUNX2_10bp_21bp_minP_2"
## [1] "RUNX2_10bp_21bp_minP_3"
## [1] "RUNX2_5bp_10bp_mCMV_1"
## [1] "RUNX2_5bp_10bp_mCMV_2"
## [1] "RUNX2_5bp_10bp_mCMV_3"
## [1] "RUNX2_5bp_10bp_minP_1"
## [1] "RUNX2_5bp_10bp_minP_2"
## [1] "RUNX2_5bp_10bp_minP_3"
## [1] "RUNX2_5bp_21bp_mCMV_1"
## [1] "RUNX2_5bp_21bp_mCMV_2"
## [1] "RUNX2_5bp_21bp_mCMV_3"
## [1] "RUNX2_5bp_21bp_minP_1"
## [1] "RUNX2_5bp_21bp_minP_2"
## [1] "RUNX2_5bp_21bp_minP_3"
## [1] "RUNX2_TF-seq_NA_10bp_mCMV_NA"
## [1] "RUNX2_TF-seq_NA_10bp_minP_NA"
## [1] "RUNX2_TF-seq_NA_21bp_mCMV_NA"
## [1] "RUNX2_TF-seq_NA_21bp_minP_NA"
## [1] "RXRA_10bp_10bp_mCMV_1"
## [1] "RXRA_10bp_10bp_mCMV_2"
## [1] "RXRA_10bp_10bp_mCMV_3"
## [1] "RXRA_10bp_10bp_minP_1"
## [1] "RXRA_10bp_10bp_minP_2"
## [1] "RXRA_10bp_10bp_minP_3"
## [1] "RXRA_10bp_21bp_Random_1"
## [1] "RXRA_10bp_21bp_mCMV_1"
## [1] "RXRA_10bp_21bp_mCMV_2"
## [1] "RXRA_10bp_21bp_mCMV_3"
## [1] "RXRA_10bp_21bp_minP_1"
## [1] "RXRA_10bp_21bp_minP_2"
## [1] "RXRA_10bp_21bp_minP_3"
## [1] "RXRA_5bp_10bp_mCMV_1"
## [1] "RXRA_5bp_10bp_mCMV_2"
## [1] "RXRA_5bp_10bp_mCMV_3"
## [1] "RXRA_5bp_10bp_minP_1"
## [1] "RXRA_5bp_10bp_minP_2"
## [1] "RXRA_5bp_10bp_minP_3"
## [1] "RXRA_5bp_21bp_mCMV_1"
## [1] "RXRA_5bp_21bp_mCMV_2"
## [1] "RXRA_5bp_21bp_mCMV_3"
## [1] "RXRA_5bp_21bp_minP_1"
## [1] "RXRA_5bp_21bp_minP_2"
## [1] "RXRA_5bp_21bp_minP_3"
## [1] "SMAD2::SMAD3::SMAD4_10bp_10bp_mCMV_1"
## [1] "SMAD2::SMAD3::SMAD4_10bp_10bp_mCMV_2"
## [1] "SMAD2::SMAD3::SMAD4_10bp_10bp_mCMV_3"
## [1] "SMAD2::SMAD3::SMAD4_10bp_10bp_minP_1"
## [1] "SMAD2::SMAD3::SMAD4_10bp_10bp_minP_2"
## [1] "SMAD2::SMAD3::SMAD4_10bp_10bp_minP_3"
## [1] "SMAD2::SMAD3::SMAD4_10bp_21bp_Random_1"
## [1] "SMAD2::SMAD3::SMAD4_10bp_21bp_mCMV_1"
## [1] "SMAD2::SMAD3::SMAD4_10bp_21bp_mCMV_2"
## [1] "SMAD2::SMAD3::SMAD4_10bp_21bp_mCMV_3"
## [1] "SMAD2::SMAD3::SMAD4_10bp_21bp_minP_1"
## [1] "SMAD2::SMAD3::SMAD4_10bp_21bp_minP_2"
## [1] "SMAD2::SMAD3::SMAD4_10bp_21bp_minP_3"
## [1] "SMAD2::SMAD3::SMAD4_5bp_10bp_mCMV_1"
## [1] "SMAD2::SMAD3::SMAD4_5bp_10bp_mCMV_2"
## [1] "SMAD2::SMAD3::SMAD4_5bp_10bp_mCMV_3"
## [1] "SMAD2::SMAD3::SMAD4_5bp_10bp_minP_1"
## [1] "SMAD2::SMAD3::SMAD4_5bp_10bp_minP_2"
## [1] "SMAD2::SMAD3::SMAD4_5bp_10bp_minP_3"
## [1] "SMAD2::SMAD3::SMAD4_5bp_21bp_mCMV_1"
## [1] "SMAD2::SMAD3::SMAD4_5bp_21bp_mCMV_2"
## [1] "SMAD2::SMAD3::SMAD4_5bp_21bp_mCMV_3"
## [1] "SMAD2::SMAD3::SMAD4_5bp_21bp_minP_1"
## [1] "SMAD2::SMAD3::SMAD4_5bp_21bp_minP_2"
## [1] "SMAD2::SMAD3::SMAD4_5bp_21bp_minP_3"
## [1] "SMAD2::SMAD3::SMAD4_TF-seq_NA_10bp_mCMV_NA"
## [1] "SMAD2::SMAD3::SMAD4_TF-seq_NA_10bp_minP_NA"
## [1] "SMAD2::SMAD3::SMAD4_TF-seq_NA_21bp_mCMV_NA"
## [1] "SMAD2::SMAD3::SMAD4_TF-seq_NA_21bp_minP_NA"
## [1] "SMAD2::SMAD3::SMAD4_promega_NA_10bp_mCMV_NA"
## [1] "SMAD2::SMAD3::SMAD4_promega_NA_10bp_minP_NA"
## [1] "SMAD2::SMAD3::SMAD4_promega_NA_21bp_mCMV_NA"
## [1] "SMAD2::SMAD3::SMAD4_promega_NA_21bp_minP_NA"
## [1] "SMAD2::SMAD3::SMAD4_promega_long_NA_10bp_mCMV_NA"
## [1] "SMAD2::SMAD3::SMAD4_promega_long_NA_10bp_minP_NA"
## [1] "SMAD2::SMAD3::SMAD4_romanov_NA_10bp_mCMV_NA"
## [1] "SMAD2::SMAD3::SMAD4_romanov_NA_10bp_minP_NA"
## [1] "SMAD2::SMAD3::SMAD4_romanov_NA_21bp_mCMV_NA"
## [1] "SMAD2::SMAD3::SMAD4_romanov_NA_21bp_minP_NA"
## [1] "SMAD4_10bp_10bp_hBGm_1"
## [1] "SMAD4_10bp_10bp_hBGm_2"
## [1] "SMAD4_10bp_10bp_hBGm_3"
## [1] "SMAD4_10bp_10bp_mCMV_1"
## [1] "SMAD4_10bp_10bp_mCMV_2"
## [1] "SMAD4_10bp_10bp_mCMV_3"
## [1] "SMAD4_10bp_10bp_minP_1"
## [1] "SMAD4_10bp_10bp_minP_2"
## [1] "SMAD4_10bp_10bp_minP_3"
## [1] "SMAD4_10bp_21bp_Random_1"
## [1] "SMAD4_10bp_21bp_hBGm_1"
## [1] "SMAD4_10bp_21bp_hBGm_2"
## [1] "SMAD4_10bp_21bp_hBGm_3"
## [1] "SMAD4_10bp_21bp_mCMV_1"
## [1] "SMAD4_10bp_21bp_mCMV_2"
## [1] "SMAD4_10bp_21bp_mCMV_3"
## [1] "SMAD4_10bp_21bp_minP_1"
## [1] "SMAD4_10bp_21bp_minP_2"
## [1] "SMAD4_10bp_21bp_minP_3"
## [1] "SMAD4_5bp_10bp_hBGm_1"
## [1] "SMAD4_5bp_10bp_hBGm_2"
## [1] "SMAD4_5bp_10bp_hBGm_3"
## [1] "SMAD4_5bp_10bp_mCMV_1"
## [1] "SMAD4_5bp_10bp_mCMV_2"
## [1] "SMAD4_5bp_10bp_mCMV_3"
## [1] "SMAD4_5bp_10bp_minP_1"
## [1] "SMAD4_5bp_10bp_minP_2"
## [1] "SMAD4_5bp_10bp_minP_3"
## [1] "SMAD4_5bp_21bp_hBGm_1"
## [1] "SMAD4_5bp_21bp_hBGm_2"
## [1] "SMAD4_5bp_21bp_hBGm_3"
## [1] "SMAD4_5bp_21bp_mCMV_1"
## [1] "SMAD4_5bp_21bp_mCMV_2"
## [1] "SMAD4_5bp_21bp_mCMV_3"
## [1] "SMAD4_5bp_21bp_minP_1"
## [1] "SMAD4_5bp_21bp_minP_2"
## [1] "SMAD4_5bp_21bp_minP_3"
## [1] "SOX2_10bp_10bp_mCMV_1"
## [1] "SOX2_10bp_10bp_mCMV_2"
## [1] "SOX2_10bp_10bp_mCMV_3"
## [1] "SOX2_10bp_10bp_minP_1"
## [1] "SOX2_10bp_10bp_minP_2"
## [1] "SOX2_10bp_10bp_minP_3"
## [1] "SOX2_10bp_21bp_Random_1"
## [1] "SOX2_10bp_21bp_mCMV_1"
## [1] "SOX2_10bp_21bp_mCMV_2"
## [1] "SOX2_10bp_21bp_mCMV_3"
## [1] "SOX2_10bp_21bp_minP_1"
## [1] "SOX2_10bp_21bp_minP_2"
## [1] "SOX2_10bp_21bp_minP_3"
## [1] "SOX2_5bp_10bp_mCMV_1"
## [1] "SOX2_5bp_10bp_mCMV_2"
## [1] "SOX2_5bp_10bp_mCMV_3"
## [1] "SOX2_5bp_10bp_minP_1"
## [1] "SOX2_5bp_10bp_minP_2"
## [1] "SOX2_5bp_10bp_minP_3"
## [1] "SOX2_5bp_21bp_mCMV_1"
## [1] "SOX2_5bp_21bp_mCMV_2"
## [1] "SOX2_5bp_21bp_mCMV_3"
## [1] "SOX2_5bp_21bp_minP_1"
## [1] "SOX2_5bp_21bp_minP_2"
## [1] "SOX2_5bp_21bp_minP_3"
## [1] "SOX2_romanov_NA_10bp_mCMV_NA"
## [1] "SOX2_romanov_NA_10bp_minP_NA"
## [1] "SOX2_romanov_NA_21bp_mCMV_NA"
## [1] "SOX2_romanov_NA_21bp_minP_NA"
## [1] "SOX9_10bp_10bp_mCMV_1"
## [1] "SOX9_10bp_10bp_mCMV_2"
## [1] "SOX9_10bp_10bp_mCMV_3"
## [1] "SOX9_10bp_10bp_minP_1"
## [1] "SOX9_10bp_10bp_minP_2"
## [1] "SOX9_10bp_10bp_minP_3"
## [1] "SOX9_10bp_21bp_Random_1"
## [1] "SOX9_10bp_21bp_mCMV_1"
## [1] "SOX9_10bp_21bp_mCMV_2"
## [1] "SOX9_10bp_21bp_mCMV_3"
## [1] "SOX9_10bp_21bp_minP_1"
## [1] "SOX9_10bp_21bp_minP_2"
## [1] "SOX9_10bp_21bp_minP_3"
## [1] "SOX9_5bp_10bp_mCMV_1"
## [1] "SOX9_5bp_10bp_mCMV_2"
## [1] "SOX9_5bp_10bp_mCMV_3"
## [1] "SOX9_5bp_10bp_minP_1"
## [1] "SOX9_5bp_10bp_minP_2"
## [1] "SOX9_5bp_10bp_minP_3"
## [1] "SOX9_5bp_21bp_mCMV_1"
## [1] "SOX9_5bp_21bp_mCMV_2"
## [1] "SOX9_5bp_21bp_mCMV_3"
## [1] "SOX9_5bp_21bp_minP_1"
## [1] "SOX9_5bp_21bp_minP_2"
## [1] "SOX9_5bp_21bp_minP_3"
## [1] "SP1_10bp_10bp_hBGm_1"
## [1] "SP1_10bp_10bp_hBGm_2"
## [1] "SP1_10bp_10bp_hBGm_3"
## [1] "SP1_10bp_10bp_mCMV_1"
## [1] "SP1_10bp_10bp_mCMV_2"
## [1] "SP1_10bp_10bp_mCMV_3"
## [1] "SP1_10bp_10bp_minP_1"
## [1] "SP1_10bp_10bp_minP_2"
## [1] "SP1_10bp_10bp_minP_3"
## [1] "SP1_10bp_21bp_Random_1"
## [1] "SP1_10bp_21bp_hBGm_1"
## [1] "SP1_10bp_21bp_hBGm_2"
## [1] "SP1_10bp_21bp_hBGm_3"
## [1] "SP1_10bp_21bp_mCMV_1"
## [1] "SP1_10bp_21bp_mCMV_2"
## [1] "SP1_10bp_21bp_mCMV_3"
## [1] "SP1_10bp_21bp_minP_1"
## [1] "SP1_10bp_21bp_minP_2"
## [1] "SP1_10bp_21bp_minP_3"
## [1] "SP1_5bp_10bp_hBGm_1"
## [1] "SP1_5bp_10bp_hBGm_2"
## [1] "SP1_5bp_10bp_hBGm_3"
## [1] "SP1_5bp_10bp_mCMV_1"
## [1] "SP1_5bp_10bp_mCMV_2"
## [1] "SP1_5bp_10bp_mCMV_3"
## [1] "SP1_5bp_10bp_minP_1"
## [1] "SP1_5bp_10bp_minP_2"
## [1] "SP1_5bp_10bp_minP_3"
## [1] "SP1_5bp_21bp_hBGm_1"
## [1] "SP1_5bp_21bp_hBGm_2"
## [1] "SP1_5bp_21bp_hBGm_3"
## [1] "SP1_5bp_21bp_mCMV_1"
## [1] "SP1_5bp_21bp_mCMV_2"
## [1] "SP1_5bp_21bp_mCMV_3"
## [1] "SP1_5bp_21bp_minP_1"
## [1] "SP1_5bp_21bp_minP_2"
## [1] "SP1_5bp_21bp_minP_3"
## [1] "SP1_TF-seq_NA_10bp_mCMV_NA"
## [1] "SP1_TF-seq_NA_10bp_minP_NA"
## [1] "SP1_TF-seq_NA_21bp_mCMV_NA"
## [1] "SP1_TF-seq_NA_21bp_minP_NA"
## [1] "SP1_romanov_NA_10bp_mCMV_NA"
## [1] "SP1_romanov_NA_10bp_minP_NA"
## [1] "SP1_romanov_NA_21bp_mCMV_NA"
## [1] "SP1_romanov_NA_21bp_minP_NA"
## [1] "SREBF1_TF-seq_NA_10bp_mCMV_NA"
## [1] "SREBF1_TF-seq_NA_10bp_minP_NA"
## [1] "SREBF1_TF-seq_NA_21bp_mCMV_NA"
## [1] "SREBF1_TF-seq_NA_21bp_minP_NA"
## [1] "SREBP_romanov_NA_10bp_mCMV_NA"
## [1] "SREBP_romanov_NA_10bp_minP_NA"
## [1] "SREBP_romanov_NA_21bp_mCMV_NA"
## [1] "SREBP_romanov_NA_21bp_minP_NA"
## [1] "SRE_promega_NA_10bp_mCMV_NA"
## [1] "SRE_promega_NA_10bp_minP_NA"
## [1] "SRE_promega_NA_21bp_mCMV_NA"
## [1] "SRE_promega_NA_21bp_minP_NA"
## [1] "SRE_promega_long_NA_10bp_mCMV_NA"
## [1] "SRE_promega_long_NA_10bp_minP_NA"
## [1] "SRF_10bp_10bp_mCMV_1"
## [1] "SRF_10bp_10bp_mCMV_2"
## [1] "SRF_10bp_10bp_mCMV_3"
## [1] "SRF_10bp_10bp_minP_1"
## [1] "SRF_10bp_10bp_minP_2"
## [1] "SRF_10bp_10bp_minP_3"
## [1] "SRF_10bp_21bp_Random_1"
## [1] "SRF_10bp_21bp_mCMV_1"
## [1] "SRF_10bp_21bp_mCMV_2"
## [1] "SRF_10bp_21bp_mCMV_3"
## [1] "SRF_10bp_21bp_minP_1"
## [1] "SRF_10bp_21bp_minP_2"
## [1] "SRF_10bp_21bp_minP_3"
## [1] "SRF_5bp_10bp_mCMV_1"
## [1] "SRF_5bp_10bp_mCMV_2"
## [1] "SRF_5bp_10bp_mCMV_3"
## [1] "SRF_5bp_10bp_minP_1"
## [1] "SRF_5bp_10bp_minP_2"
## [1] "SRF_5bp_10bp_minP_3"
## [1] "SRF_5bp_21bp_mCMV_1"
## [1] "SRF_5bp_21bp_mCMV_2"
## [1] "SRF_5bp_21bp_mCMV_3"
## [1] "SRF_5bp_21bp_minP_1"
## [1] "SRF_5bp_21bp_minP_2"
## [1] "SRF_5bp_21bp_minP_3"
## [1] "SRF_TF-seq_NA_10bp_mCMV_NA"
## [1] "SRF_TF-seq_NA_10bp_minP_NA"
## [1] "SRF_TF-seq_NA_21bp_mCMV_NA"
## [1] "SRF_TF-seq_NA_21bp_minP_NA"
## [1] "SRF_promega_NA_10bp_mCMV_NA"
## [1] "SRF_promega_NA_10bp_minP_NA"
## [1] "SRF_promega_NA_21bp_mCMV_NA"
## [1] "SRF_promega_NA_21bp_minP_NA"
## [1] "SRF_promega_long_NA_10bp_mCMV_NA"
## [1] "SRF_promega_long_NA_10bp_minP_NA"
## [1] "STAT1.49_TF-seq_NA_10bp_mCMV_NA"
## [1] "STAT1.49_TF-seq_NA_10bp_minP_NA"
## [1] "STAT1.49_TF-seq_NA_21bp_mCMV_NA"
## [1] "STAT1.49_TF-seq_NA_21bp_minP_NA"
## [1] "STAT1.50_TF-seq_NA_10bp_mCMV_NA"
## [1] "STAT1.50_TF-seq_NA_10bp_minP_NA"
## [1] "STAT1.50_TF-seq_NA_21bp_mCMV_NA"
## [1] "STAT1.50_TF-seq_NA_21bp_minP_NA"
## [1] "STAT1::STAT2_10bp_10bp_mCMV_1"
## [1] "STAT1::STAT2_10bp_10bp_mCMV_2"
## [1] "STAT1::STAT2_10bp_10bp_mCMV_3"
## [1] "STAT1::STAT2_10bp_10bp_minP_1"
## [1] "STAT1::STAT2_10bp_10bp_minP_2"
## [1] "STAT1::STAT2_10bp_10bp_minP_3"
## [1] "STAT1::STAT2_10bp_21bp_Random_1"
## [1] "STAT1::STAT2_10bp_21bp_mCMV_1"
## [1] "STAT1::STAT2_10bp_21bp_mCMV_2"
## [1] "STAT1::STAT2_10bp_21bp_mCMV_3"
## [1] "STAT1::STAT2_10bp_21bp_minP_1"
## [1] "STAT1::STAT2_10bp_21bp_minP_2"
## [1] "STAT1::STAT2_10bp_21bp_minP_3"
## [1] "STAT1::STAT2_5bp_10bp_mCMV_1"
## [1] "STAT1::STAT2_5bp_10bp_mCMV_2"
## [1] "STAT1::STAT2_5bp_10bp_mCMV_3"
## [1] "STAT1::STAT2_5bp_10bp_minP_1"
## [1] "STAT1::STAT2_5bp_10bp_minP_2"
## [1] "STAT1::STAT2_5bp_10bp_minP_3"
## [1] "STAT1::STAT2_5bp_21bp_mCMV_1"
## [1] "STAT1::STAT2_5bp_21bp_mCMV_2"
## [1] "STAT1::STAT2_5bp_21bp_mCMV_3"
## [1] "STAT1::STAT2_5bp_21bp_minP_1"
## [1] "STAT1::STAT2_5bp_21bp_minP_2"
## [1] "STAT1::STAT2_5bp_21bp_minP_3"
## [1] "STAT1::STAT2_TF-seq_NA_10bp_mCMV_NA"
## [1] "STAT1::STAT2_TF-seq_NA_10bp_minP_NA"
## [1] "STAT1::STAT2_TF-seq_NA_21bp_mCMV_NA"
## [1] "STAT1::STAT2_TF-seq_NA_21bp_minP_NA"
## [1] "STAT1::STAT2_promega_NA_10bp_mCMV_NA"
## [1] "STAT1::STAT2_promega_NA_10bp_minP_NA"
## [1] "STAT1::STAT2_promega_NA_21bp_mCMV_NA"
## [1] "STAT1::STAT2_promega_NA_21bp_minP_NA"
## [1] "STAT1_TF-seq_NA_10bp_mCMV_NA"
## [1] "STAT1_TF-seq_NA_10bp_minP_NA"
## [1] "STAT1_TF-seq_NA_21bp_mCMV_NA"
## [1] "STAT1_TF-seq_NA_21bp_minP_NA"
## [1] "STAT1_promega_long_NA_10bp_mCMV_NA"
## [1] "STAT1_promega_long_NA_10bp_minP_NA"
## [1] "STAT3_10bp_10bp_hBGm_1"
## [1] "STAT3_10bp_10bp_hBGm_2"
## [1] "STAT3_10bp_10bp_hBGm_3"
## [1] "STAT3_10bp_10bp_mCMV_1"
## [1] "STAT3_10bp_10bp_mCMV_2"
## [1] "STAT3_10bp_10bp_mCMV_3"
## [1] "STAT3_10bp_10bp_minP_1"
## [1] "STAT3_10bp_10bp_minP_2"
## [1] "STAT3_10bp_10bp_minP_3"
## [1] "STAT3_10bp_21bp_Random_1"
## [1] "STAT3_10bp_21bp_hBGm_1"
## [1] "STAT3_10bp_21bp_hBGm_2"
## [1] "STAT3_10bp_21bp_hBGm_3"
## [1] "STAT3_10bp_21bp_mCMV_1"
## [1] "STAT3_10bp_21bp_mCMV_2"
## [1] "STAT3_10bp_21bp_mCMV_3"
## [1] "STAT3_10bp_21bp_minP_1"
## [1] "STAT3_10bp_21bp_minP_2"
## [1] "STAT3_10bp_21bp_minP_3"
## [1] "STAT3_5bp_10bp_hBGm_1"
## [1] "STAT3_5bp_10bp_hBGm_2"
## [1] "STAT3_5bp_10bp_hBGm_3"
## [1] "STAT3_5bp_10bp_mCMV_1"
## [1] "STAT3_5bp_10bp_mCMV_2"
## [1] "STAT3_5bp_10bp_mCMV_3"
## [1] "STAT3_5bp_10bp_minP_1"
## [1] "STAT3_5bp_10bp_minP_2"
## [1] "STAT3_5bp_10bp_minP_3"
## [1] "STAT3_5bp_21bp_hBGm_1"
## [1] "STAT3_5bp_21bp_hBGm_2"
## [1] "STAT3_5bp_21bp_hBGm_3"
## [1] "STAT3_5bp_21bp_mCMV_1"
## [1] "STAT3_5bp_21bp_mCMV_2"
## [1] "STAT3_5bp_21bp_mCMV_3"
## [1] "STAT3_5bp_21bp_minP_1"
## [1] "STAT3_5bp_21bp_minP_2"
## [1] "STAT3_5bp_21bp_minP_3"
## [1] "STAT3_TF-seq_NA_10bp_mCMV_NA"
## [1] "STAT3_TF-seq_NA_10bp_minP_NA"
## [1] "STAT3_TF-seq_NA_21bp_mCMV_NA"
## [1] "STAT3_TF-seq_NA_21bp_minP_NA"
## [1] "STAT3_promega_NA_10bp_mCMV_NA"
## [1] "STAT3_promega_NA_10bp_minP_NA"
## [1] "STAT3_promega_NA_21bp_mCMV_NA"
## [1] "STAT3_promega_NA_21bp_minP_NA"
## [1] "STAT3_promega_long_NA_10bp_mCMV_NA"
## [1] "STAT3_promega_long_NA_10bp_minP_NA"
## [1] "STAT3_romanov_NA_10bp_mCMV_NA"
## [1] "STAT3_romanov_NA_10bp_minP_NA"
## [1] "STAT3_romanov_NA_21bp_mCMV_NA"
## [1] "STAT3_romanov_NA_21bp_minP_NA"
## [1] "STAT4_TF-seq_NA_10bp_mCMV_NA"
## [1] "STAT4_TF-seq_NA_10bp_minP_NA"
## [1] "STAT4_TF-seq_NA_21bp_mCMV_NA"
## [1] "STAT4_TF-seq_NA_21bp_minP_NA"
## [1] "STAT5_TF-seq_NA_10bp_mCMV_NA"
## [1] "STAT5_TF-seq_NA_10bp_minP_NA"
## [1] "STAT5_TF-seq_NA_21bp_mCMV_NA"
## [1] "STAT5_TF-seq_NA_21bp_minP_NA"
## [1] "STAT5_promega_NA_10bp_mCMV_NA"
## [1] "STAT5_promega_NA_10bp_minP_NA"
## [1] "STAT5_promega_NA_21bp_mCMV_NA"
## [1] "STAT5_promega_NA_21bp_minP_NA"
## [1] "STAT5_promega_long_NA_10bp_mCMV_NA"
## [1] "STAT5_promega_long_NA_10bp_minP_NA"
## [1] "STAT6_TF-seq_NA_10bp_mCMV_NA"
## [1] "STAT6_TF-seq_NA_10bp_minP_NA"
## [1] "STAT6_TF-seq_NA_21bp_mCMV_NA"
## [1] "STAT6_TF-seq_NA_21bp_minP_NA"
## [1] "TCF3_10bp_10bp_hBGm_1"
## [1] "TCF3_10bp_10bp_hBGm_2"
## [1] "TCF3_10bp_10bp_hBGm_3"
## [1] "TCF3_10bp_10bp_mCMV_1"
## [1] "TCF3_10bp_10bp_mCMV_2"
## [1] "TCF3_10bp_10bp_mCMV_3"
## [1] "TCF3_10bp_10bp_minP_1"
## [1] "TCF3_10bp_10bp_minP_2"
## [1] "TCF3_10bp_10bp_minP_3"
## [1] "TCF3_10bp_21bp_Random_1"
## [1] "TCF3_10bp_21bp_hBGm_1"
## [1] "TCF3_10bp_21bp_hBGm_2"
## [1] "TCF3_10bp_21bp_hBGm_3"
## [1] "TCF3_10bp_21bp_mCMV_1"
## [1] "TCF3_10bp_21bp_mCMV_2"
## [1] "TCF3_10bp_21bp_mCMV_3"
## [1] "TCF3_10bp_21bp_minP_1"
## [1] "TCF3_10bp_21bp_minP_2"
## [1] "TCF3_10bp_21bp_minP_3"
## [1] "TCF3_5bp_10bp_hBGm_1"
## [1] "TCF3_5bp_10bp_hBGm_2"
## [1] "TCF3_5bp_10bp_hBGm_3"
## [1] "TCF3_5bp_10bp_mCMV_1"
## [1] "TCF3_5bp_10bp_mCMV_2"
## [1] "TCF3_5bp_10bp_mCMV_3"
## [1] "TCF3_5bp_10bp_minP_1"
## [1] "TCF3_5bp_10bp_minP_2"
## [1] "TCF3_5bp_10bp_minP_3"
## [1] "TCF3_5bp_21bp_hBGm_1"
## [1] "TCF3_5bp_21bp_hBGm_2"
## [1] "TCF3_5bp_21bp_hBGm_3"
## [1] "TCF3_5bp_21bp_mCMV_1"
## [1] "TCF3_5bp_21bp_mCMV_2"
## [1] "TCF3_5bp_21bp_mCMV_3"
## [1] "TCF3_5bp_21bp_minP_1"
## [1] "TCF3_5bp_21bp_minP_2"
## [1] "TCF3_5bp_21bp_minP_3"
## [1] "TCF7_10bp_10bp_mCMV_1"
## [1] "TCF7_10bp_10bp_mCMV_2"
## [1] "TCF7_10bp_10bp_mCMV_3"
## [1] "TCF7_10bp_10bp_minP_1"
## [1] "TCF7_10bp_10bp_minP_2"
## [1] "TCF7_10bp_10bp_minP_3"
## [1] "TCF7_10bp_21bp_Random_1"
## [1] "TCF7_10bp_21bp_mCMV_1"
## [1] "TCF7_10bp_21bp_mCMV_2"
## [1] "TCF7_10bp_21bp_mCMV_3"
## [1] "TCF7_10bp_21bp_minP_1"
## [1] "TCF7_10bp_21bp_minP_2"
## [1] "TCF7_10bp_21bp_minP_3"
## [1] "TCF7_5bp_10bp_mCMV_1"
## [1] "TCF7_5bp_10bp_mCMV_2"
## [1] "TCF7_5bp_10bp_mCMV_3"
## [1] "TCF7_5bp_10bp_minP_1"
## [1] "TCF7_5bp_10bp_minP_2"
## [1] "TCF7_5bp_10bp_minP_3"
## [1] "TCF7_5bp_21bp_mCMV_1"
## [1] "TCF7_5bp_21bp_mCMV_2"
## [1] "TCF7_5bp_21bp_mCMV_3"
## [1] "TCF7_5bp_21bp_minP_1"
## [1] "TCF7_5bp_21bp_minP_2"
## [1] "TCF7_5bp_21bp_minP_3"
## [1] "TCF7_TF-seq_NA_10bp_mCMV_NA"
## [1] "TCF7_TF-seq_NA_10bp_minP_NA"
## [1] "TCF7_TF-seq_NA_21bp_mCMV_NA"
## [1] "TCF7_TF-seq_NA_21bp_minP_NA"
## [1] "TCF7_promega_NA_10bp_mCMV_NA"
## [1] "TCF7_promega_NA_10bp_minP_NA"
## [1] "TCF7_promega_NA_21bp_mCMV_NA"
## [1] "TCF7_promega_NA_21bp_minP_NA"
## [1] "TCF7_promega_long_NA_10bp_mCMV_NA"
## [1] "TCF7_promega_long_NA_10bp_minP_NA"
## [1] "TCF7_romanov_NA_10bp_mCMV_NA"
## [1] "TCF7_romanov_NA_10bp_minP_NA"
## [1] "TCF7_romanov_NA_21bp_mCMV_NA"
## [1] "TCF7_romanov_NA_21bp_minP_NA"
## [1] "TEAD1_10bp_10bp_mCMV_1"
## [1] "TEAD1_10bp_10bp_mCMV_2"
## [1] "TEAD1_10bp_10bp_mCMV_3"
## [1] "TEAD1_10bp_10bp_minP_1"
## [1] "TEAD1_10bp_10bp_minP_2"
## [1] "TEAD1_10bp_10bp_minP_3"
## [1] "TEAD1_10bp_21bp_Random_1"
## [1] "TEAD1_10bp_21bp_mCMV_1"
## [1] "TEAD1_10bp_21bp_mCMV_2"
## [1] "TEAD1_10bp_21bp_mCMV_3"
## [1] "TEAD1_10bp_21bp_minP_1"
## [1] "TEAD1_10bp_21bp_minP_2"
## [1] "TEAD1_10bp_21bp_minP_3"
## [1] "TEAD1_5bp_10bp_mCMV_1"
## [1] "TEAD1_5bp_10bp_mCMV_2"
## [1] "TEAD1_5bp_10bp_mCMV_3"
## [1] "TEAD1_5bp_10bp_minP_1"
## [1] "TEAD1_5bp_10bp_minP_2"
## [1] "TEAD1_5bp_10bp_minP_3"
## [1] "TEAD1_5bp_21bp_mCMV_1"
## [1] "TEAD1_5bp_21bp_mCMV_2"
## [1] "TEAD1_5bp_21bp_mCMV_3"
## [1] "TEAD1_5bp_21bp_minP_1"
## [1] "TEAD1_5bp_21bp_minP_2"
## [1] "TEAD1_5bp_21bp_minP_3"
## [1] "TEAD1_TF-seq_NA_10bp_mCMV_NA"
## [1] "TEAD1_TF-seq_NA_10bp_minP_NA"
## [1] "TEAD1_TF-seq_NA_21bp_mCMV_NA"
## [1] "TEAD1_TF-seq_NA_21bp_minP_NA"
## [1] "TFAP2A_10bp_10bp_mCMV_1"
## [1] "TFAP2A_10bp_10bp_mCMV_2"
## [1] "TFAP2A_10bp_10bp_mCMV_3"
## [1] "TFAP2A_10bp_10bp_minP_1"
## [1] "TFAP2A_10bp_10bp_minP_2"
## [1] "TFAP2A_10bp_10bp_minP_3"
## [1] "TFAP2A_10bp_21bp_Random_1"
## [1] "TFAP2A_10bp_21bp_mCMV_1"
## [1] "TFAP2A_10bp_21bp_mCMV_2"
## [1] "TFAP2A_10bp_21bp_mCMV_3"
## [1] "TFAP2A_10bp_21bp_minP_1"
## [1] "TFAP2A_10bp_21bp_minP_2"
## [1] "TFAP2A_10bp_21bp_minP_3"
## [1] "TFAP2A_5bp_10bp_mCMV_1"
## [1] "TFAP2A_5bp_10bp_mCMV_2"
## [1] "TFAP2A_5bp_10bp_mCMV_3"
## [1] "TFAP2A_5bp_10bp_minP_1"
## [1] "TFAP2A_5bp_10bp_minP_2"
## [1] "TFAP2A_5bp_10bp_minP_3"
## [1] "TFAP2A_5bp_21bp_mCMV_1"
## [1] "TFAP2A_5bp_21bp_mCMV_2"
## [1] "TFAP2A_5bp_21bp_mCMV_3"
## [1] "TFAP2A_5bp_21bp_minP_1"
## [1] "TFAP2A_5bp_21bp_minP_2"
## [1] "TFAP2A_5bp_21bp_minP_3"
## [1] "TFAP2A_romanov_NA_10bp_mCMV_NA"
## [1] "TFAP2A_romanov_NA_10bp_minP_NA"
## [1] "TFAP2A_romanov_NA_21bp_mCMV_NA"
## [1] "TFAP2A_romanov_NA_21bp_minP_NA"
## [1] "TFCP2L1_10bp_10bp_hBGm_1"
## [1] "TFCP2L1_10bp_10bp_hBGm_2"
## [1] "TFCP2L1_10bp_10bp_hBGm_3"
## [1] "TFCP2L1_10bp_10bp_mCMV_1"
## [1] "TFCP2L1_10bp_10bp_mCMV_2"
## [1] "TFCP2L1_10bp_10bp_mCMV_3"
## [1] "TFCP2L1_10bp_10bp_minP_1"
## [1] "TFCP2L1_10bp_10bp_minP_2"
## [1] "TFCP2L1_10bp_10bp_minP_3"
## [1] "TFCP2L1_10bp_21bp_Random_1"
## [1] "TFCP2L1_10bp_21bp_hBGm_1"
## [1] "TFCP2L1_10bp_21bp_hBGm_2"
## [1] "TFCP2L1_10bp_21bp_hBGm_3"
## [1] "TFCP2L1_10bp_21bp_mCMV_1"
## [1] "TFCP2L1_10bp_21bp_mCMV_2"
## [1] "TFCP2L1_10bp_21bp_mCMV_3"
## [1] "TFCP2L1_10bp_21bp_minP_1"
## [1] "TFCP2L1_10bp_21bp_minP_2"
## [1] "TFCP2L1_10bp_21bp_minP_3"
## [1] "TFCP2L1_5bp_10bp_hBGm_1"
## [1] "TFCP2L1_5bp_10bp_hBGm_2"
## [1] "TFCP2L1_5bp_10bp_hBGm_3"
## [1] "TFCP2L1_5bp_10bp_mCMV_1"
## [1] "TFCP2L1_5bp_10bp_mCMV_2"
## [1] "TFCP2L1_5bp_10bp_mCMV_3"
## [1] "TFCP2L1_5bp_10bp_minP_1"
## [1] "TFCP2L1_5bp_10bp_minP_2"
## [1] "TFCP2L1_5bp_10bp_minP_3"
## [1] "TFCP2L1_5bp_21bp_hBGm_1"
## [1] "TFCP2L1_5bp_21bp_hBGm_2"
## [1] "TFCP2L1_5bp_21bp_hBGm_3"
## [1] "TFCP2L1_5bp_21bp_mCMV_1"
## [1] "TFCP2L1_5bp_21bp_mCMV_2"
## [1] "TFCP2L1_5bp_21bp_mCMV_3"
## [1] "TFCP2L1_5bp_21bp_minP_1"
## [1] "TFCP2L1_5bp_21bp_minP_2"
## [1] "TFCP2L1_5bp_21bp_minP_3"
## [1] "TFEB_TF-seq_NA_10bp_mCMV_NA"
## [1] "TFEB_TF-seq_NA_10bp_minP_NA"
## [1] "TFEB_TF-seq_NA_21bp_mCMV_NA"
## [1] "TFEB_TF-seq_NA_21bp_minP_NA"
## [1] "THRA_10bp_10bp_mCMV_1"
## [1] "THRA_10bp_10bp_mCMV_2"
## [1] "THRA_10bp_10bp_mCMV_3"
## [1] "THRA_10bp_10bp_minP_1"
## [1] "THRA_10bp_10bp_minP_2"
## [1] "THRA_10bp_10bp_minP_3"
## [1] "THRA_10bp_21bp_Random_1"
## [1] "THRA_10bp_21bp_mCMV_1"
## [1] "THRA_10bp_21bp_mCMV_2"
## [1] "THRA_10bp_21bp_mCMV_3"
## [1] "THRA_10bp_21bp_minP_1"
## [1] "THRA_10bp_21bp_minP_2"
## [1] "THRA_10bp_21bp_minP_3"
## [1] "THRA_5bp_10bp_mCMV_1"
## [1] "THRA_5bp_10bp_mCMV_2"
## [1] "THRA_5bp_10bp_mCMV_3"
## [1] "THRA_5bp_10bp_minP_1"
## [1] "THRA_5bp_10bp_minP_2"
## [1] "THRA_5bp_10bp_minP_3"
## [1] "THRA_5bp_21bp_mCMV_1"
## [1] "THRA_5bp_21bp_mCMV_2"
## [1] "THRA_5bp_21bp_mCMV_3"
## [1] "THRA_5bp_21bp_minP_1"
## [1] "THRA_5bp_21bp_minP_2"
## [1] "THRA_5bp_21bp_minP_3"
## [1] "THRB_10bp_10bp_mCMV_1"
## [1] "THRB_10bp_10bp_mCMV_2"
## [1] "THRB_10bp_10bp_mCMV_3"
## [1] "THRB_10bp_10bp_minP_1"
## [1] "THRB_10bp_10bp_minP_2"
## [1] "THRB_10bp_10bp_minP_3"
## [1] "THRB_10bp_21bp_Random_1"
## [1] "THRB_10bp_21bp_mCMV_1"
## [1] "THRB_10bp_21bp_mCMV_2"
## [1] "THRB_10bp_21bp_mCMV_3"
## [1] "THRB_10bp_21bp_minP_1"
## [1] "THRB_10bp_21bp_minP_2"
## [1] "THRB_10bp_21bp_minP_3"
## [1] "THRB_5bp_10bp_mCMV_1"
## [1] "THRB_5bp_10bp_mCMV_2"
## [1] "THRB_5bp_10bp_mCMV_3"
## [1] "THRB_5bp_10bp_minP_1"
## [1] "THRB_5bp_10bp_minP_2"
## [1] "THRB_5bp_10bp_minP_3"
## [1] "THRB_5bp_21bp_mCMV_1"
## [1] "THRB_5bp_21bp_mCMV_2"
## [1] "THRB_5bp_21bp_mCMV_3"
## [1] "THRB_5bp_21bp_minP_1"
## [1] "THRB_5bp_21bp_minP_2"
## [1] "THRB_5bp_21bp_minP_3"
## [1] "TP53_10bp_10bp_hBGm_1"
## [1] "TP53_10bp_10bp_hBGm_2"
## [1] "TP53_10bp_10bp_hBGm_3"
## [1] "TP53_10bp_10bp_mCMV_1"
## [1] "TP53_10bp_10bp_mCMV_2"
## [1] "TP53_10bp_10bp_mCMV_3"
## [1] "TP53_10bp_10bp_minP_1"
## [1] "TP53_10bp_10bp_minP_2"
## [1] "TP53_10bp_10bp_minP_3"
## [1] "TP53_10bp_21bp_Random_1"
## [1] "TP53_10bp_21bp_hBGm_1"
## [1] "TP53_10bp_21bp_hBGm_2"
## [1] "TP53_10bp_21bp_hBGm_3"
## [1] "TP53_10bp_21bp_mCMV_1"
## [1] "TP53_10bp_21bp_mCMV_2"
## [1] "TP53_10bp_21bp_mCMV_3"
## [1] "TP53_10bp_21bp_minP_1"
## [1] "TP53_10bp_21bp_minP_2"
## [1] "TP53_10bp_21bp_minP_3"
## [1] "TP53_5bp_10bp_hBGm_1"
## [1] "TP53_5bp_10bp_hBGm_2"
## [1] "TP53_5bp_10bp_hBGm_3"
## [1] "TP53_5bp_10bp_mCMV_1"
## [1] "TP53_5bp_10bp_mCMV_2"
## [1] "TP53_5bp_10bp_mCMV_3"
## [1] "TP53_5bp_10bp_minP_1"
## [1] "TP53_5bp_10bp_minP_2"
## [1] "TP53_5bp_10bp_minP_3"
## [1] "TP53_5bp_21bp_hBGm_1"
## [1] "TP53_5bp_21bp_hBGm_2"
## [1] "TP53_5bp_21bp_hBGm_3"
## [1] "TP53_5bp_21bp_mCMV_1"
## [1] "TP53_5bp_21bp_mCMV_2"
## [1] "TP53_5bp_21bp_mCMV_3"
## [1] "TP53_5bp_21bp_minP_1"
## [1] "TP53_5bp_21bp_minP_2"
## [1] "TP53_5bp_21bp_minP_3"
## [1] "TP53_promega_NA_10bp_mCMV_NA"
## [1] "TP53_promega_NA_10bp_minP_NA"
## [1] "TP53_promega_NA_21bp_mCMV_NA"
## [1] "TP53_promega_NA_21bp_minP_NA"
## [1] "TP53_promega_long_NA_10bp_mCMV_NA"
## [1] "TP53_promega_long_NA_10bp_minP_NA"
## [1] "TP53_romanov_NA_10bp_mCMV_NA"
## [1] "TP53_romanov_NA_10bp_minP_NA"
## [1] "TP53_romanov_NA_21bp_mCMV_NA"
## [1] "TP53_romanov_NA_21bp_minP_NA"
## [1] "T_10bp_10bp_mCMV_1"
## [1] "T_10bp_10bp_mCMV_2"
## [1] "T_10bp_10bp_mCMV_3"
## [1] "T_10bp_10bp_minP_1"
## [1] "T_10bp_10bp_minP_2"
## [1] "T_10bp_10bp_minP_3"
## [1] "T_10bp_21bp_Random_1"
## [1] "T_10bp_21bp_mCMV_1"
## [1] "T_10bp_21bp_mCMV_2"
## [1] "T_10bp_21bp_mCMV_3"
## [1] "T_10bp_21bp_minP_1"
## [1] "T_10bp_21bp_minP_2"
## [1] "T_10bp_21bp_minP_3"
## [1] "T_5bp_10bp_mCMV_1"
## [1] "T_5bp_10bp_mCMV_2"
## [1] "T_5bp_10bp_mCMV_3"
## [1] "T_5bp_10bp_minP_1"
## [1] "T_5bp_10bp_minP_2"
## [1] "T_5bp_10bp_minP_3"
## [1] "T_5bp_21bp_mCMV_1"
## [1] "T_5bp_21bp_mCMV_2"
## [1] "T_5bp_21bp_mCMV_3"
## [1] "T_5bp_21bp_minP_1"
## [1] "T_5bp_21bp_minP_2"
## [1] "T_5bp_21bp_minP_3"
## [1] "VDR::RXRA_10bp_10bp_mCMV_1"
## [1] "VDR::RXRA_10bp_10bp_mCMV_2"
## [1] "VDR::RXRA_10bp_10bp_mCMV_3"
## [1] "VDR::RXRA_10bp_10bp_minP_1"
## [1] "VDR::RXRA_10bp_10bp_minP_2"
## [1] "VDR::RXRA_10bp_10bp_minP_3"
## [1] "VDR::RXRA_10bp_21bp_Random_1"
## [1] "VDR::RXRA_10bp_21bp_mCMV_1"
## [1] "VDR::RXRA_10bp_21bp_mCMV_2"
## [1] "VDR::RXRA_10bp_21bp_mCMV_3"
## [1] "VDR::RXRA_10bp_21bp_minP_1"
## [1] "VDR::RXRA_10bp_21bp_minP_2"
## [1] "VDR::RXRA_10bp_21bp_minP_3"
## [1] "VDR::RXRA_5bp_10bp_mCMV_1"
## [1] "VDR::RXRA_5bp_10bp_mCMV_2"
## [1] "VDR::RXRA_5bp_10bp_mCMV_3"
## [1] "VDR::RXRA_5bp_10bp_minP_1"
## [1] "VDR::RXRA_5bp_10bp_minP_2"
## [1] "VDR::RXRA_5bp_10bp_minP_3"
## [1] "VDR::RXRA_5bp_21bp_mCMV_1"
## [1] "VDR::RXRA_5bp_21bp_mCMV_2"
## [1] "VDR::RXRA_5bp_21bp_mCMV_3"
## [1] "VDR::RXRA_5bp_21bp_minP_1"
## [1] "VDR::RXRA_5bp_21bp_minP_2"
## [1] "VDR::RXRA_5bp_21bp_minP_3"
## [1] "VDR::RXRA_TF-seq_NA_10bp_mCMV_NA"
## [1] "VDR::RXRA_TF-seq_NA_10bp_minP_NA"
## [1] "VDR::RXRA_TF-seq_NA_21bp_mCMV_NA"
## [1] "VDR::RXRA_TF-seq_NA_21bp_minP_NA"
## [1] "WT1_10bp_10bp_mCMV_1"
## [1] "WT1_10bp_10bp_mCMV_2"
## [1] "WT1_10bp_10bp_mCMV_3"
## [1] "WT1_10bp_10bp_minP_1"
## [1] "WT1_10bp_10bp_minP_2"
## [1] "WT1_10bp_10bp_minP_3"
## [1] "WT1_10bp_21bp_Random_1"
## [1] "WT1_10bp_21bp_mCMV_1"
## [1] "WT1_10bp_21bp_mCMV_2"
## [1] "WT1_10bp_21bp_mCMV_3"
## [1] "WT1_10bp_21bp_minP_1"
## [1] "WT1_10bp_21bp_minP_2"
## [1] "WT1_10bp_21bp_minP_3"
## [1] "WT1_5bp_10bp_mCMV_1"
## [1] "WT1_5bp_10bp_mCMV_2"
## [1] "WT1_5bp_10bp_mCMV_3"
## [1] "WT1_5bp_10bp_minP_1"
## [1] "WT1_5bp_10bp_minP_2"
## [1] "WT1_5bp_10bp_minP_3"
## [1] "WT1_5bp_21bp_mCMV_1"
## [1] "WT1_5bp_21bp_mCMV_2"
## [1] "WT1_5bp_21bp_mCMV_3"
## [1] "WT1_5bp_21bp_minP_1"
## [1] "WT1_5bp_21bp_minP_2"
## [1] "WT1_5bp_21bp_minP_3"
## [1] "XBP1_10bp_10bp_mCMV_1"
## [1] "XBP1_10bp_10bp_mCMV_2"
## [1] "XBP1_10bp_10bp_mCMV_3"
## [1] "XBP1_10bp_10bp_minP_1"
## [1] "XBP1_10bp_10bp_minP_2"
## [1] "XBP1_10bp_10bp_minP_3"
## [1] "XBP1_10bp_21bp_Random_1"
## [1] "XBP1_10bp_21bp_mCMV_1"
## [1] "XBP1_10bp_21bp_mCMV_2"
## [1] "XBP1_10bp_21bp_mCMV_3"
## [1] "XBP1_10bp_21bp_minP_1"
## [1] "XBP1_10bp_21bp_minP_2"
## [1] "XBP1_10bp_21bp_minP_3"
## [1] "XBP1_5bp_10bp_mCMV_1"
## [1] "XBP1_5bp_10bp_mCMV_2"
## [1] "XBP1_5bp_10bp_mCMV_3"
## [1] "XBP1_5bp_10bp_minP_1"
## [1] "XBP1_5bp_10bp_minP_2"
## [1] "XBP1_5bp_10bp_minP_3"
## [1] "XBP1_5bp_21bp_mCMV_1"
## [1] "XBP1_5bp_21bp_mCMV_2"
## [1] "XBP1_5bp_21bp_mCMV_3"
## [1] "XBP1_5bp_21bp_minP_1"
## [1] "XBP1_5bp_21bp_minP_2"
## [1] "XBP1_5bp_21bp_minP_3"
## [1] "XBP1_TF-seq_NA_10bp_mCMV_NA"
## [1] "XBP1_TF-seq_NA_10bp_minP_NA"
## [1] "XBP1_TF-seq_NA_21bp_mCMV_NA"
## [1] "XBP1_TF-seq_NA_21bp_minP_NA"
## [1] "XBP1_promega_NA_10bp_mCMV_NA"
## [1] "XBP1_promega_NA_10bp_minP_NA"
## [1] "XBP1_promega_NA_21bp_mCMV_NA"
## [1] "XBP1_promega_NA_21bp_minP_NA"
## [1] "XBP1_promega_long_NA_10bp_mCMV_NA"
## [1] "XBP1_promega_long_NA_10bp_minP_NA"
## [1] "XBP1_romanov_NA_10bp_mCMV_NA"
## [1] "XBP1_romanov_NA_10bp_minP_NA"
## [1] "XBP1_romanov_NA_21bp_mCMV_NA"
## [1] "XBP1_romanov_NA_21bp_minP_NA"
## [1] "ZFP42_10bp_10bp_hBGm_1"
## [1] "ZFP42_10bp_10bp_hBGm_2"
## [1] "ZFP42_10bp_10bp_hBGm_3"
## [1] "ZFP42_10bp_10bp_mCMV_1"
## [1] "ZFP42_10bp_10bp_mCMV_2"
## [1] "ZFP42_10bp_10bp_mCMV_3"
## [1] "ZFP42_10bp_10bp_minP_1"
## [1] "ZFP42_10bp_10bp_minP_2"
## [1] "ZFP42_10bp_10bp_minP_3"
## [1] "ZFP42_10bp_21bp_Random_1"
## [1] "ZFP42_10bp_21bp_hBGm_1"
## [1] "ZFP42_10bp_21bp_hBGm_2"
## [1] "ZFP42_10bp_21bp_hBGm_3"
## [1] "ZFP42_10bp_21bp_mCMV_1"
## [1] "ZFP42_10bp_21bp_mCMV_2"
## [1] "ZFP42_10bp_21bp_mCMV_3"
## [1] "ZFP42_10bp_21bp_minP_1"
## [1] "ZFP42_10bp_21bp_minP_2"
## [1] "ZFP42_10bp_21bp_minP_3"
## [1] "ZFP42_5bp_10bp_hBGm_1"
## [1] "ZFP42_5bp_10bp_hBGm_2"
## [1] "ZFP42_5bp_10bp_hBGm_3"
## [1] "ZFP42_5bp_10bp_mCMV_1"
## [1] "ZFP42_5bp_10bp_mCMV_2"
## [1] "ZFP42_5bp_10bp_mCMV_3"
## [1] "ZFP42_5bp_10bp_minP_1"
## [1] "ZFP42_5bp_10bp_minP_2"
## [1] "ZFP42_5bp_10bp_minP_3"
## [1] "ZFP42_5bp_21bp_hBGm_1"
## [1] "ZFP42_5bp_21bp_hBGm_2"
## [1] "ZFP42_5bp_21bp_hBGm_3"
## [1] "ZFP42_5bp_21bp_mCMV_1"
## [1] "ZFP42_5bp_21bp_mCMV_2"
## [1] "ZFP42_5bp_21bp_mCMV_3"
## [1] "ZFP42_5bp_21bp_minP_1"
## [1] "ZFP42_5bp_21bp_minP_2"
## [1] "ZFP42_5bp_21bp_minP_3"
## [1] "ZFX_10bp_10bp_hBGm_1"
## [1] "ZFX_10bp_10bp_hBGm_2"
## [1] "ZFX_10bp_10bp_hBGm_3"
## [1] "ZFX_10bp_10bp_mCMV_1"
## [1] "ZFX_10bp_10bp_mCMV_2"
## [1] "ZFX_10bp_10bp_mCMV_3"
## [1] "ZFX_10bp_10bp_minP_1"
## [1] "ZFX_10bp_10bp_minP_2"
## [1] "ZFX_10bp_10bp_minP_3"
## [1] "ZFX_10bp_21bp_Random_1"
## [1] "ZFX_10bp_21bp_hBGm_1"
## [1] "ZFX_10bp_21bp_hBGm_2"
## [1] "ZFX_10bp_21bp_hBGm_3"
## [1] "ZFX_10bp_21bp_mCMV_1"
## [1] "ZFX_10bp_21bp_mCMV_2"
## [1] "ZFX_10bp_21bp_mCMV_3"
## [1] "ZFX_10bp_21bp_minP_1"
## [1] "ZFX_10bp_21bp_minP_2"
## [1] "ZFX_10bp_21bp_minP_3"
## [1] "ZFX_5bp_10bp_hBGm_1"
## [1] "ZFX_5bp_10bp_hBGm_2"
## [1] "ZFX_5bp_10bp_hBGm_3"
## [1] "ZFX_5bp_10bp_mCMV_1"
## [1] "ZFX_5bp_10bp_mCMV_2"
## [1] "ZFX_5bp_10bp_mCMV_3"
## [1] "ZFX_5bp_10bp_minP_1"
## [1] "ZFX_5bp_10bp_minP_2"
## [1] "ZFX_5bp_10bp_minP_3"
## [1] "ZFX_5bp_21bp_hBGm_1"
## [1] "ZFX_5bp_21bp_hBGm_2"
## [1] "ZFX_5bp_21bp_hBGm_3"
## [1] "ZFX_5bp_21bp_mCMV_1"
## [1] "ZFX_5bp_21bp_mCMV_2"
## [1] "ZFX_5bp_21bp_mCMV_3"
## [1] "ZFX_5bp_21bp_minP_1"
## [1] "ZFX_5bp_21bp_minP_2"
## [1] "ZFX_5bp_21bp_minP_3"
pval_list <- pval_list[lengths(pval_list) > 0]
pval_df <- data.frame(bind_rows(pval_list))
rownames(pval_df) <- names(pval_list)
pval_df <- as.data.frame(pval_df)
pval_df <- pval_df %>%
  rownames_to_column("reporter_id2") %>%
  pivot_longer(-reporter_id2, names_to = "id", values_to = "pval_neg") %>%
  mutate(id = gsub("1.2", "1+2", id)) %>%
  na.omit()

bc_df_cDNA_filt <- merge(bc_df_cDNA_filt, pval_df, by = c("reporter_id2", "id"), all = T)

Calculate correlations between technical replicates

## Identify and relabel double reporters
bc_df_12 <- bc_df_cDNA_filt %>%
  filter(nchar == 12, library == "1+2")
bc_df_13 <- bc_df_cDNA_filt %>%
  filter(nchar == 13, library == "1+2")
double_reporters <- unique(bc_df_13$reporter_id[bc_df_13$reporter_id %in% bc_df_12$reporter_id])

double_reporters_df <- bc_df_cDNA_filt %>%
  filter(reporter_id %in% double_reporters, library == "1+2", nchar == 13)
double_reporters_df$reporter_id_2 <- paste(double_reporters_df$reporter_id, double_reporters_df$nchar)
bc_df_cDNA_filt$reporter_id_2 <- paste(bc_df_cDNA_filt$reporter_id, bc_df_cDNA_filt$nchar)
bc_df_cDNA_filt <- bc_df_cDNA_filt[!bc_df_cDNA_filt$reporter_id_2 %in% double_reporters_df$reporter_id_2,] %>%
  dplyr::select(-reporter_id_2)
double_reporters_df <- double_reporters_df %>%
  dplyr::select(-reporter_id_2)

double_reporters_df$barcode_number[double_reporters_df$barcode_number == 1] <- 9
double_reporters_df$barcode_number[double_reporters_df$barcode_number == 2] <- 10
double_reporters_df$barcode_number[double_reporters_df$barcode_number == 3] <- 11
double_reporters_df$barcode_number[double_reporters_df$barcode_number == 4] <- 12
double_reporters_df$barcode_number[double_reporters_df$barcode_number == 5] <- 13

bc_df_cDNA_filt <- rbind(bc_df_cDNA_filt, double_reporters_df)

## Combine replicates in 8 different columns

bc_df_rep <- bc_df_cDNA_filt %>% 
  filter(commercial_reporter == "No", rand_promoter == "No", native_enhancer == "No", hPGK == "No") %>%
  dplyr::select(barcode_number, activity, sample_id, reporter_id, neg_ctrls, library) %>%
  spread(barcode_number, activity)
names(bc_df_rep) <- gsub("([1-9]{1})", "TR\\1", names(bc_df_rep))


for (i in unique(bc_df_rep$library)) {
  p <- ggscatter(bc_df_rep[bc_df_rep$library == i,], x = "TR1", y = "TR2",
                 add = "reg.line",
                 color = "neg_ctrls",
                 size = 0.5,
                 add.params = list(color = "blue", fill = "lightgray"), 
                 title = paste("rep1 vs rep2 - library:", i),
                 conf.int = TRUE, ylab = "rep2", xlab = "rep1") + 
    stat_cor(method = "pearson", label.x = 4, label.y = 0) + 
    geom_abline(linetype = "dashed") +
    xlim(0,50) + ylim(0,50) +
    scale_color_manual(values = colors) +
    facet_wrap(~sample_id)
  print(p)
}
## `geom_smooth()` using formula 'y ~ x'

## `geom_smooth()` using formula 'y ~ x'

## `geom_smooth()` using formula 'y ~ x'

# Correlation matrix plot
n <- sample(1:nrow(bc_df_rep), 5000)
boundaries <- seq(from = 0.8, by = 0.05, length.out = 4)
plt <- ggpairs(bc_df_rep %>% filter(library == "1") %>% dplyr::select('TR1', 'TR2', 'TR3', 'TR4', 'TR5', 'TR6', 'TR7', 'TR8'),
               upper = list(continuous = corColor),
               lower = list(continuous = function(data, mapping, ...) {
                   ggally_points(data = data[n, ], mapping = mapping, alpha = 0.1, size = 0.5) +
                   geom_abline(slope = 1, lty = "dashed", col = "red") +
                   theme_bw()}),
               diag = list(continuous = function(data, mapping, ...) {
                   ggally_densityDiag(data = data, mapping = mapping, alpha = 0.3, fill = "red") +
                   theme_bw()})) +
  ggtitle("Correlation Between Technial Replicates") +
  theme(text = element_text(size = 20)) +
  xlab("Reporter activity") +
  ylab("Reporter activity")

print(plt)


Correlation between replicates

# Correlation plots of the replicates
## Combine replicates of normalized data in 3 different columns
bc_df_rep <- bc_df_cDNA_filt %>% 
  dplyr::select(replicate, mean_activity_sample_minP, reporter_id, condition, neg_ctrls, library, gcf) %>% 
  unique() %>%
  spread(replicate, mean_activity_sample_minP)

colors <- c("#2D3047", "#1B998B")

for (i in unique(bc_df_rep$library)) {
  p <- ggscatter(bc_df_rep[bc_df_rep$library == i,], x = "r1", y = "r2",
                 add = "reg.line",
                 color = "neg_ctrls",
                 size = 0.5,
                 add.params = list(color = "blue", fill = "lightgray"), 
                 title = paste("rep1 vs rep2 - library:", i),
                 conf.int = TRUE, ylab = "rep2", xlab = "rep1") + 
    stat_cor(method = "pearson", label.x = 4, label.y = 0) + 
    geom_abline(linetype = "dashed") +
    xlim(0,50) + ylim(0,50) +
    scale_color_manual(values = colors) +
    facet_wrap(~condition)
  print(p)
}
## `geom_smooth()` using formula 'y ~ x'

## `geom_smooth()` using formula 'y ~ x'

## `geom_smooth()` using formula 'y ~ x'

for (i in unique(bc_df_rep$library)) {
  p <- ggscatter(bc_df_rep[bc_df_rep$library == i,], x = "r1", y = "r3",
                 add = "reg.line",
                 color = "neg_ctrls",
                 size = 0.5,
                 add.params = list(color = "blue", fill = "lightgray"), 
                 title = paste("rep1 vs rep3 - library:", i),
                 conf.int = TRUE, ylab = "rep3", xlab = "rep1") + 
    stat_cor(method = "pearson", label.x = 4, label.y = 0) + 
    geom_abline(linetype = "dashed") +
    xlim(0,50) + ylim(0,50) +
    scale_color_manual(values = colors) +
    facet_wrap(~condition)
  print(p)
}
## `geom_smooth()` using formula 'y ~ x'

## `geom_smooth()` using formula 'y ~ x'

## `geom_smooth()` using formula 'y ~ x'

for (i in unique(bc_df_rep$library)) {
  p <- ggscatter(bc_df_rep[bc_df_rep$library == i,], x = "r2", y = "r3",
                 add = "reg.line",
                 color = "neg_ctrls",
                 size = 0.5,
                 add.params = list(color = "blue", fill = "lightgray"), 
                 title = paste("rep2 vs rep3 - library:", i),
                 conf.int = TRUE, ylab = "rep3", xlab = "rep2") + 
    stat_cor(method = "pearson", label.x = 4, label.y = 0) + 
    geom_abline(linetype = "dashed") +
    xlim(0,50) + ylim(0,50) +
    scale_color_manual(values = colors) +
    facet_wrap(~condition)
  print(p)
}
## `geom_smooth()` using formula 'y ~ x'

## `geom_smooth()` using formula 'y ~ x'

## `geom_smooth()` using formula 'y ~ x'

# Mean of the three replicates
bc_df_cDNA_filt$reporter_activity <- ave(bc_df_cDNA_filt$mean_activity_sample, bc_df_cDNA_filt$reporter_id, bc_df_cDNA_filt$condition, FUN = function(x) mean(x))
bc_df_cDNA_filt$reporter_activity_minP <- ave(bc_df_cDNA_filt$mean_activity_sample_minP, bc_df_cDNA_filt$reporter_id, bc_df_cDNA_filt$condition, FUN = function(x) mean(x))
bc_df_cDNA_filt$reporter_activity_nfya <- ave(bc_df_cDNA_filt$mean_activity_sample_nfya, bc_df_cDNA_filt$reporter_id, bc_df_cDNA_filt$condition, FUN = function(x) mean(x))
bc_df_cDNA_filt$reporter_activity_neg <- ave(bc_df_cDNA_filt$mean_activity_sample_neg, bc_df_cDNA_filt$reporter_id, bc_df_cDNA_filt$condition, FUN = function(x) mean(x))

# Polish export dataframe
bc_df_cDNA_filt <- bc_df_cDNA_filt %>% 
  dplyr::select(-upper_activity, -lower_activity, 
         -high_outlier, -low_outlier, -match, -pMT02, -pMT09, -pMT09_02, -mean_activity, -sd_activity)


# Export bc_df for cDNA analysis
filename <- SetFileName("_reporter_activity_filt_combined", "mt")
setwd("/DATA/usr/m.trauernicht/projects/SuRE-TF/data/gcf6578_gen2_stimulation-2/results/")
write.csv(bc_df_cDNA_filt, file = paste(filename,".csv", sep = ""), row.names = F)

Session Info

paste("Run time: ",format(Sys.time()-StartTime))
## [1] "Run time:  23.08863 mins"
getwd()
## [1] "/DATA/usr/m.trauernicht/projects/SuRE-TF/analyses"
date()
## [1] "Tue Dec 21 13:13:25 2021"
sessionInfo()
## R version 4.0.5 (2021-03-31)
## Platform: x86_64-pc-linux-gnu (64-bit)
## Running under: Ubuntu 20.04.3 LTS
## 
## Matrix products: default
## BLAS:   /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3
## LAPACK: /usr/lib/x86_64-linux-gnu/openblas-pthread/liblapack.so.3
## 
## locale:
##  [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C              
##  [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8    
##  [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8   
##  [7] LC_PAPER=en_US.UTF-8       LC_NAME=C                 
##  [9] LC_ADDRESS=C               LC_TELEPHONE=C            
## [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C       
## 
## attached base packages:
## [1] stats4    parallel  stats     graphics  grDevices utils     datasets 
## [8] methods   base     
## 
## other attached packages:
##  [1] pheatmap_1.0.12             PCAtools_2.2.0             
##  [3] ggrepel_0.9.1               DESeq2_1.30.1              
##  [5] SummarizedExperiment_1.20.0 Biobase_2.50.0             
##  [7] MatrixGenerics_1.2.1        matrixStats_0.59.0         
##  [9] GenomicRanges_1.42.0        GenomeInfoDb_1.26.7        
## [11] IRanges_2.24.1              S4Vectors_0.28.1           
## [13] BiocGenerics_0.36.1         viridis_0.6.1              
## [15] viridisLite_0.4.0           grr_0.9.5                  
## [17] tidyr_1.1.3                 LncFinder_1.1.4            
## [19] gridExtra_2.3               RColorBrewer_1.1-2         
## [21] readr_1.4.0                 haven_2.4.1                
## [23] ggbeeswarm_0.6.0            plotly_4.9.4.1             
## [25] tibble_3.1.2                dplyr_1.0.7                
## [27] vwr_0.3.0                   latticeExtra_0.6-29        
## [29] lattice_0.20-41             stringdist_0.9.6.3         
## [31] GGally_2.1.2                ggpubr_0.4.0               
## [33] ggplot2_3.3.5               stringr_1.4.0              
## [35] plyr_1.8.6                  data.table_1.14.0          
## 
## loaded via a namespace (and not attached):
##   [1] readxl_1.3.1              backports_1.2.1          
##   [3] lazyeval_0.2.2            splines_4.0.5            
##   [5] crosstalk_1.1.1           BiocParallel_1.24.1      
##   [7] digest_0.6.27             foreach_1.5.1            
##   [9] htmltools_0.5.1.1         fansi_0.5.0              
##  [11] memoise_2.0.0             magrittr_2.0.1           
##  [13] openxlsx_4.2.4            recipes_0.1.16           
##  [15] annotate_1.68.0           gower_0.2.2              
##  [17] jpeg_0.1-8.1              colorspace_2.0-2         
##  [19] blob_1.2.1                xfun_0.24                
##  [21] crayon_1.4.1              RCurl_1.98-1.3           
##  [23] jsonlite_1.7.2            genefilter_1.72.1        
##  [25] survival_3.2-10           iterators_1.0.13         
##  [27] glue_1.4.2                gtable_0.3.0             
##  [29] ipred_0.9-11              zlibbioc_1.36.0          
##  [31] XVector_0.30.0            seqinr_4.2-8             
##  [33] DelayedArray_0.16.3       BiocSingular_1.6.0       
##  [35] car_3.0-11                abind_1.4-5              
##  [37] scales_1.1.1              DBI_1.1.1                
##  [39] rstatix_0.7.0             Rcpp_1.0.7               
##  [41] xtable_1.8-4              dqrng_0.3.0              
##  [43] rsvd_1.0.5                foreign_0.8-81           
##  [45] bit_4.0.4                 proxy_0.4-26             
##  [47] lava_1.6.9                prodlim_2019.11.13       
##  [49] htmlwidgets_1.5.3         httr_1.4.2               
##  [51] ellipsis_0.3.2            farver_2.1.0             
##  [53] pkgconfig_2.0.3           reshape_0.8.8            
##  [55] XML_3.99-0.6              nnet_7.3-16              
##  [57] sass_0.4.0                locfit_1.5-9.4           
##  [59] utf8_1.2.1                caret_6.0-88             
##  [61] labeling_0.4.2            tidyselect_1.1.1         
##  [63] rlang_0.4.11              reshape2_1.4.4           
##  [65] AnnotationDbi_1.52.0      cachem_1.0.5             
##  [67] munsell_0.5.0             cellranger_1.1.0         
##  [69] tools_4.0.5               cli_3.0.0                
##  [71] generics_0.1.0            RSQLite_2.2.7            
##  [73] ade4_1.7-17               broom_0.7.8              
##  [75] fastmap_1.1.0             evaluate_0.14            
##  [77] yaml_2.2.1                ModelMetrics_1.2.2.2     
##  [79] knitr_1.33                bit64_4.0.5              
##  [81] zip_2.2.0                 purrr_0.3.4              
##  [83] sparseMatrixStats_1.2.1   nlme_3.1-152             
##  [85] rstudioapi_0.13           compiler_4.0.5           
##  [87] beeswarm_0.4.0            curl_4.3.2               
##  [89] png_0.1-7                 e1071_1.7-7              
##  [91] ggsignif_0.6.2            geneplotter_1.68.0       
##  [93] bslib_0.2.5.1             stringi_1.7.2            
##  [95] highr_0.9                 forcats_0.5.1            
##  [97] Matrix_1.3-2              vctrs_0.3.8              
##  [99] pillar_1.6.1              lifecycle_1.0.0          
## [101] jquerylib_0.1.4           irlba_2.3.3              
## [103] cowplot_1.1.1             bitops_1.0-7             
## [105] R6_2.5.0                  rio_0.5.27               
## [107] vipor_0.4.5               codetools_0.2-18         
## [109] MASS_7.3-53.1             assertthat_0.2.1         
## [111] withr_2.4.2               GenomeInfoDbData_1.2.4   
## [113] mgcv_1.8-34               hms_1.1.0                
## [115] beachmat_2.6.4            grid_4.0.5               
## [117] rpart_4.1-15              timeDate_3043.102        
## [119] class_7.3-18              DelayedMatrixStats_1.12.3
## [121] rmarkdown_2.11            carData_3.0-4            
## [123] pROC_1.17.0.1             lubridate_1.7.10