Barcode preprocessing - TF reporter library 90 TFs - combined
Max Trauernicht
Netherlands Cancer Institute - van Steensel labm.trauernicht@nki.nl
21/12/2021
Aim
In more than 100 samples, 35,500 reporters for 86 TFs were transfected into various cells (mainly mES, K562 & HepG2), and stimulated with various compounds. All the barcode counts from the 7 different sequencing runs are combined in this analysis. In this scripts, sanity checks will be carried out to filter out samples with bad quality, and barcode counts will be normalized to compute reporter activitites. To be more precise, the data consists of two different libraries, library 1, which is more focused on mES biology, and library 2, which is more focused on classical signaling pathways.
Setup
Libraries
knitr::opts_chunk$set(echo = TRUE)
StartTime <-Sys.time()
# 8-digit Date tag:
Date <- substr(gsub("-","",Sys.time()),1,8)
# libraries:
library(data.table)
library(plyr)
library(stringr)
library(ggpubr)
library(GGally)
library(vwr)
library(dplyr)
library(tibble)
library(plotly)
library(ggbeeswarm)
library(haven)
library(readr)
library(parallel)
library(RColorBrewer)
library(gridExtra)
library(LncFinder)
library(tidyr)
library(grr)
library(viridis)
library(DESeq2)
library(PCAtools)
library(pheatmap)Functions
# Custom functions
SetFileName <- function(filename, initials) {
# Set filename with extension and initials to make filename with date integrated.
filename <- substitute(filename)
initials <- substitute(initials)
filename <- paste0(initials, Date, filename)
filename
}
ReadFasta<-function(file) {
# Read the file line by line
fasta<-readLines(file)
# Identify header lines
ind<-grep(">", fasta)
# Identify the sequence lines
s<-data.frame(ind=ind, from=ind+1, to=c((ind-1)[-1], length(fasta)))
# Process sequence lines
seqs<-rep(NA, length(ind))
for(i in 1:length(ind)) {
seqs[i]<-paste(fasta[s$from[i]:s$to[i]], collapse="")
}
# Create a data frame
DF<-data.frame(name=gsub(">", "", fasta[ind]), sequence=seqs)
# Return the data frame as a result object from the function
return(DF)
}
# From Fede:
# ggpairs custom functions
corColor <- function(data, mapping, color = I("black"), sizeRange = c(1, 3), ...) {
x <- eval_data_col(data, mapping$x)
y <- eval_data_col(data, mapping$y)
r <- cor(x, y, "pairwise.complete.obs")
rt <- format(r, digits = 3)
tt <- as.character(rt)
cex <- max(sizeRange)
# helper function to calculate a useable size
percent_of_range <- function(percent, range) {
percent * diff(range) + min(range, na.rm = TRUE)
}
# plot correlation coefficient
p <- ggally_text(label = tt, mapping = aes(), xP = 0.5, yP = 0.5,
size = I(percent_of_range(cex * abs(r), sizeRange)), color = color, ...) +
theme(panel.grid.minor=element_blank(),
panel.grid.major=element_blank())
corColors <- RColorBrewer::brewer.pal(n = 7, name = "RdYlBu")[2:6]
if (r <= boundaries[1]) {
corCol <- corColors[1]
} else if (r <= boundaries[2]) {
corCol <- corColors[2]
} else if (r < boundaries[3]) {
corCol <- corColors[3]
} else if (r < boundaries[4]) {
corCol <- corColors[4]
} else {
corCol <- corColors[5]
}
p <- p +
theme(panel.background = element_rect(fill = corCol))
return(p)
}
# Custom ggplot2 themes
theme_classic_lines <- function() {
theme_pubr(border = T, legend = "top") +
theme(panel.grid.major = element_line(colour = "#adb5bd", size = 0.1),
strip.background = element_rect(fill = "#ced4da"))
}
theme_classic_lines_45 <- function() {
theme_pubr(border = T, legend = "top", x.text.angle = 45) +
theme(panel.grid.major = element_line(colour = "#adb5bd", size = 0.1),
strip.background = element_rect(fill = "#ced4da"))
}
theme_classic_lines_90 <- function() {
theme_pubr(border = T,legend = "top", x.text.angle = 90) +
theme(panel.grid.major = element_line(colour = "#adb5bd", size = 0.1),
strip.background = element_rect(fill = "#ced4da"))
}
theme_set(theme_classic_lines())
colors_diverse <- c("#264653", "#2a9d8f", "#e9c46a", "#f4a261", "#e76f51")
ggplot_custom <- function(...) ggplot2::ggplot(...) +
scale_color_manual(values = colors_diverse) +
scale_fill_manual(values = colors_diverse)
hline <- function(y = 0, color = "black") {
list(
type = "line",
x0 = 0,
x1 = 1,
xref = "paper",
y0 = y,
y1 = y,
line = list(color = color)
)
}Loading data
# Load metadata file that contains all required information about the sequenced samples
metadata_df <- read_csv2("/DATA/usr/m.trauernicht/projects/SuRE-TF/data/gcf6578_gen2_stimulation-2/mt20211025_metadata_all_experiments.csv")
# Load in barcode counts
bc_files <- paste(metadata_df$path, metadata_df$file, sep = "")
bc_files <- lapply(bc_files, fread, header = FALSE)
names(bc_files) <- metadata_df$id
# Import barcode annotation of both libraries
bc_annotation <- read_csv2("/DATA/usr/m.trauernicht/projects/SuRE-TF/data/gcf6578_gen2_stimulation-2/mt20211021_bc_annotation_combined.csv") %>%
dplyr::select(-library)Creating count data frames
# Generate one long data frame from the list of data frames
bc_df <- bind_rows(bc_files, .id = "sample_id") %>%
dplyr::select(sample_id, "barcode" = V1, "starcode_counts" = V2)
# Library 1 has barcodes of length 12 while library 2 has barcodes of length 13
# For sequencing samples that have library 1 and 2 mixed I extracted barcodes of length >=12
# So, I will now filter out all barcodes with length >13, because those are not relevant
bc_df$nchar <- nchar(bc_df$barcode)
bc_df <- bc_df %>%
filter(nchar <= 13)
# Add barcode annotation to the data
bc_df <- merge(bc_df, bc_annotation, all = T)
# Add experiment annotation to the data
metadata_selected <- metadata_df %>%
dplyr::select('sample_id' = id, gcf, replicate, condition, sample, library)
bc_df <- merge(bc_df, metadata_selected, all = T, by = "sample_id")
bc_df$starcode_counts[is.na(bc_df$starcode_counts)] <- 0
# First compute reads per million to estimate the relative counts in the respective sample
bc_df <- bc_df %>%
mutate(rpm = ave(starcode_counts, sample_id, FUN = function(x) (x+1) / sum(x) *1e6 ))
bc_df_filt <- bc_df[!is.na(bc_df$tf),]
bc_df_unmatched <- bc_df[is.na(bc_df$tf),]Correlate and cluster individual samples
# Make dataframe to compare raw counts between conditions
bc_df_filt <- bc_df_filt[!is.na(bc_df_filt$sample),]
bc_df_cor <- bc_df_filt %>%
dplyr::select(-starcode_counts)
bc_df_cor <- bc_df_cor %>%
dplyr::select(sample_id, barcode, library, rpm) %>%
unique() %>%
mutate(rpm = as.integer(rpm)) %>%
spread(sample_id, rpm)
bc_df_cor[is.na(bc_df_cor)] <- 0
## Here I want to take a quick look how well individual samples correlate
# Compare pDNA data
plot(bc_df_cor$pMT09_02_r1_gcf6502, bc_df_cor$pMT09_02_r1_gcf6578)
plot(bc_df_cor$pMT09_r1_gcf6578, bc_df_cor$pMT09_r1_gcf6502)
# Convert into data.frame with row.names for deseq2
bc_df_cor2 <- bc_df_cor %>%
filter(library == "2") %>%
dplyr::select(matches("barcode|gcf6578|pMT09_r2_gcf6502|pMT09_r1_gcf6502")) %>%
dplyr::select(-pMT09_02_r1_gcf6578) %>%
column_to_rownames("barcode")
bc_df_cor3 <- bc_df_cor %>%
filter(library == "1") %>%
dplyr::select(matches("barcode|gcf5927|gcf6139|gcf6210|gcf6301")) %>%
column_to_rownames("barcode")
bc_df_cor4 <- bc_df_cor %>%
filter(library == "1+2") %>%
dplyr::select(matches("barcode|gcf6502|pMT09_02_r1_gcf6578")) %>%
dplyr::select(-pMT09_r1_gcf6502, -pMT09_r2_gcf6502) %>%
column_to_rownames("barcode")
#######################################
## Initialize deseq2
# Prepare metadata ready for deseq
metadata <- metadata_df %>%
filter(id %in% names(bc_df_cor4)) %>%
dplyr::select("replicate", "condition", "gcf", "id") %>%
unique()
# Initialize
rnaseq_dds <- DESeqDataSetFromMatrix(countData = bc_df_cor4,
colData = metadata,
design= ~ condition)
# Execute deseq2
rnaseq_dds <- DESeq(rnaseq_dds)
#######################################
## PCA analysis - quality control
# Get the "normalized" values and create PCA plot
rnaseq_dds_norm <- assay(vst(rnaseq_dds))
metadata <- metadata %>%
column_to_rownames("id")
rownames(metadata) = colnames(bc_df_cor4)
p <- pca(bc_df_cor4, metadata, removeVar = 0.1)
biplot(p,
colby = "condition",
shape = "gcf",
legendPosition = "right",
legendLabSize = 8,
legendTitleSize = 8,
legendIconSize = 3,
lab = "")
## Correlation heatmap
# bc_df_cor4$mean <- rowMeans(bc_df_cor4)
# bc_df_cor4 <- bc_df_cor4 %>%
# filter(mean > 200) %>%
# dplyr::select(-mean)
cor_df <- cor(bc_df_cor3, method = "pearson")
pheatmap(cor_df, border_color = "black")
# Get cluster information
clusters <- hclust(dist(cor_df))
cutree(clusters, h = 7) ## A549_Dex_100_r1_gcf6210 A549_Dex_100_r3_gcf6210 A549_DMSO_r1_gcf6210
## 1 1 1
## A549_DMSO_r3_gcf6210 A549_Nutlin_r1_gcf6210 A549_Nutlin_r2_gcf6210
## 1 1 1
## A549_Nutlin_r3_gcf6210 mES_2i_LIF_r1_gcf5927 mES_2i_LIF_r2_gcf5927
## 1 1 1
## mES_2i_LIF_r3_gcf5927 mES_2i_LIF_r3_gcf6139 mES_2i_r1_gcf5927
## 1 1 1
## mES_2i_r2_gcf5927 mES_2i_r3_gcf5927 mES_4OHT_r2_gcf6139
## 1 1 1
## mES_Bmp4_r3_gcf6139 mES_Dex_r3_gcf6139 mES_FK_r2_gcf6139
## 1 1 1
## mES_FK_r3_gcf6139 mES_HQ_r2_gcf6139 mES_HQ_r3_gcf6139
## 1 1 1
## mES_LIF_CH_r2_gcf5927 mES_LIF_CH_r3_gcf5927 mES_LIF_PD_r1_gcf5927
## 1 1 1
## mES_LIF_PD_r2_gcf5927 mES_LIF_PD_r3_gcf5927 mES_LPS_r2_gcf6139
## 1 1 1
## mES_LPS_r3_gcf6139 mES_N2B27_Bmp4_r1_gcf6210 mES_N2B27_Bmp4_r2_gcf6210
## 1 1 1
## mES_N2B27_Bmp4_r3_gcf6210 mES_N2B27_r1_gcf5927 mES_N2B27_r2_gcf5927
## 1 1 1
## mES_N2B27_r3_gcf5927 mES_N2B27_RA_r1_gcf6210 mES_N2B27_RA_r2_gcf6210
## 1 1 1
## mES_N2B27_RA_r3_gcf6210 mES_N2B27_Shh_r1_gcf6210 mES_N2B27_Shh_r2_gcf6210
## 1 1 1
## mES_N2B27_Shh_r3_gcf6210 mES_Nutlin_r3_gcf6139 mES_RA_r3_gcf6139
## 1 1 1
## mES_Shh_r2_gcf6139 mES_Shh_r3_gcf6139 mES_vitA_r1_gcf5927
## 1 1 1
## mES_vitA_r2_gcf5927 mES_vitA_r3_gcf5927 NPC_r1_gcf5927
## 1 1 1
## NPC_r2_gcf5927 NPC_r3_gcf5927 pMT02_r1_gcf5927
## 1 1 1
## pMT02_r1_gcf6301 pMT02_r2_gcf5927 U2OS_DMSO_r1_gcf6210
## 1 1 1
## U2OS_DMSO_r2_gcf6210 U2OS_DMSO_r3_gcf6210 U2OS_FK_r1_gcf6210
## 1 1 1
## U2OS_FK_r2_gcf6210 U2OS_FK_r3_gcf6210 U2OS_LPS_r1_gcf6210
## 1 1 1
## U2OS_LPS_r2_gcf6210
## 1plot(clusters)
abline(h = 3, col = "red")
# Apply cutree() to hclust.pokemon: cut.pokemon
cut.pokemon<-cutree(clusters,k=3)
##############################################################
# Initialize total within sum of squares error: wss
wss <- 0
# Look over 1 to 15 possible clusters
for (i in 1:15) {
# Fit the model: km.pokemon
km.pokemon <- kmeans(cor_df, centers = i, nstart = 20, iter.max = 50)
# Save the within cluster sum of squares
wss[i] <- km.pokemon$tot.withinss
}
# Produce a scree plot
plot(1:15, wss, type = "b",
xlab = "Number of Clusters",
ylab = "Within groups sum of squares")
Data quality plots
# I want to show the following:
## 1: Read distribution of matched barcodes vs. unmatched barcode
### a: total read counts per sample
for (i in unique(bc_df$library)) {
bc_df_i <- bc_df[bc_df$library == i,]
p <- plot_ly(bc_df_i %>%
mutate(sum_counts = ave(starcode_counts, sample, FUN = function(x) sum(x))) %>%
dplyr::select(sample, sum_counts) %>%
unique(),
x = ~sum_counts, y = ~sample, type = 'bar',
marker = list(color = '#D6D5C9',
line = list(color = 'rgb(8,48,107)', width = 1.5))) %>%
layout(title = paste("Number of reads per barcode per sample", i),
xaxis = list(title = "Expected number of reads per barcode per sample"),
yaxis = list(title = "Sample"))
print(p)
}
### b: read counts per TF
bc_df_filt <- bc_df[!is.na(bc_df$tf),]
ggplot_custom(bc_df_filt %>%
filter(neg_ctrls == "No", native_enhancer == "No", commercial_reporter == "No", hPGK == "No", rand_promoter == "No"), aes(x = rpm, y = tf)) +
geom_violin() +
theme(axis.text.y = element_text(size = 6)) +
xlim(0,5000) +
facet_wrap(~condition)
bc_df_2 <- bc_df[bc_df$rpm <= 250,]
bc_df_2 <- bc_df_2[bc_df_2$rpm >= 0.5,]
bc_df_2 <- bc_df_2[!is.na(bc_df_2$tf),]
ggplot_custom(bc_df_2, aes(x = rpm)) +
geom_histogram(binwidth = 20) +
xlim(0,250)+
ylim(0,6000)+
facet_wrap(~sample_id)
ggplot_custom(bc_df[bc_df$rpm >= 500 & !is.na(bc_df$tf),], aes(x = rpm)) +
geom_histogram(binwidth = 20) +
xlim(250,1000)+
ylim(0,50)+
facet_wrap(~sample_id)
n_highly_expressed <- data.frame("sample_id" = unique(bc_df$sample_id),
"n_bc" = "", stringsAsFactors = F)
for (i in unique(bc_df$sample_id)) {
n_highly_expressed$n_bc[n_highly_expressed$sample_id == i] <- length(bc_df$barcode[bc_df$rpm > 500 & bc_df$sample_id == i])
}
plot_ly(n_highly_expressed, x = ~sample_id, y = ~as.numeric(n_bc), type = 'bar',
marker = list(color = '#D6D5C9',
line = list(color = 'rgb(8,48,107)', width = 1.5))) %>%
layout(title = "Highly expressed barcodes",
xaxis = list(title = "Number of barcodes with > 500 rpm"),
yaxis = list(title = "Condition")) %>%
layout(shapes = list(hline(100)))## 2: How many barcodes can I find back at which cutoff? + What is the percentage of barcode reads that match the design at which cutoff?
## Identify the unmapped fraction
bc_fraction <- bc_df %>%
dplyr::select(sample_id, library) %>%
unique() %>%
na.omit()
rpm_cutoff <- data.frame("cutoff" = seq(0.0001,15,3))
bc_fraction <- expand_grid(bc_fraction, rpm_cutoff)
bc_fraction <- bc_fraction %>%
mutate(sample_id = paste(sample_id, library, sep = "_"))
bc_annotation2 <- bc_annotation %>%
mutate(nchar = nchar(bc_annotation$barcode))
bc_counts_design <- data.frame("library" = c("1", "2", "1+2"),
"bc_counts" = c(nrow(bc_annotation2[bc_annotation2$nchar == 12,]),
nrow(bc_annotation2[bc_annotation2$nchar == 13,]),
nrow(bc_annotation2)))
bc_fraction_list <- list()
for (i in unique(bc_fraction$sample_id)) {
print(i)
test_x <- bc_df_filt %>%
mutate(sample_id = paste(sample_id, library, sep = "_")) %>%
filter(sample_id == i)
library <- unique(test_x$library)
bc_fraction_list[[i]] <- lapply(unique(bc_fraction$cutoff), function(x) nrow(test_x[test_x$rpm >= x]) / bc_counts_design$bc_counts[bc_counts_design$library == library] *100)
names(bc_fraction_list[[i]]) <- unique(bc_fraction$cutoff)
}## [1] "A549_DMSO_r1_gcf6210_1"
## [1] "A549_DMSO_r3_gcf6210_1"
## [1] "A549_Dex_100_r1_gcf6210_1"
## [1] "A549_Dex_100_r3_gcf6210_1"
## [1] "A549_Nutlin_r1_gcf6210_1"
## [1] "A549_Nutlin_r2_gcf6210_1"
## [1] "A549_Nutlin_r3_gcf6210_1"
## [1] "HepG2_CDCA_r1_gcf6502_1+2"
## [1] "HepG2_CDCA_r2_gcf6502_1+2"
## [1] "HepG2_DMSO_FBS_r1_gcf6502_1+2"
## [1] "HepG2_DMSO_r1_gcf6502_1+2"
## [1] "HepG2_DMSO_r2_gcf6502_1+2"
## [1] "HepG2_DMSO_r3_gcf6502_1+2"
## [1] "HepG2_Rif_r1_gcf6502_1+2"
## [1] "HepG2_Rif_r2_gcf6502_1+2"
## [1] "HepG2_Rif_r3_gcf6502_1+2"
## [1] "HepG2_T09_r1_gcf6502_1+2"
## [1] "HepG2_T09_r2_gcf6502_1+2"
## [1] "HepG2_T09_r3_gcf6502_1+2"
## [1] "HepG2_Wy_r1_gcf6502_1+2"
## [1] "HepG2_Wy_r2_gcf6502_1+2"
## [1] "K562_DMSO_r1_gcf6371_1"
## [1] "K562_DMSO_r1_gcf6502_1+2"
## [1] "K562_DMSO_r2_gcf6502_1+2"
## [1] "K562_DMSO_r3_gcf6502_1+2"
## [1] "NPC_r1_gcf5927_1"
## [1] "NPC_r2_gcf5927_1"
## [1] "NPC_r3_gcf5927_1"
## [1] "U2OS_DMSO_r1_gcf6210_1"
## [1] "U2OS_DMSO_r2_gcf6210_1"
## [1] "U2OS_DMSO_r3_gcf6210_1"
## [1] "U2OS_FK_r1_gcf6210_1"
## [1] "U2OS_FK_r2_gcf6210_1"
## [1] "U2OS_FK_r3_gcf6210_1"
## [1] "U2OS_LPS_r1_gcf6210_1"
## [1] "U2OS_LPS_r2_gcf6210_1"
## [1] "mES_2i_LIF_r1_gcf5927_1"
## [1] "mES_2i_LIF_r1_gcf6578_2"
## [1] "mES_2i_LIF_r2_gcf5927_1"
## [1] "mES_2i_LIF_r2_gcf6578_2"
## [1] "mES_2i_LIF_r3_gcf5927_1"
## [1] "mES_2i_LIF_r3_gcf6139_1"
## [1] "mES_2i_LIF_r3_gcf6578_2"
## [1] "mES_2i_r1_gcf5927_1"
## [1] "mES_2i_r1_gcf6578_2"
## [1] "mES_2i_r2_gcf5927_1"
## [1] "mES_2i_r2_gcf6578_2"
## [1] "mES_2i_r3_gcf5927_1"
## [1] "mES_2i_r3_gcf6578_2"
## [1] "mES_4OHT_r2_gcf6139_1"
## [1] "mES_Bmp4_r3_gcf6139_1"
## [1] "mES_Dex_r3_gcf6139_1"
## [1] "mES_FK_r2_gcf6139_1"
## [1] "mES_FK_r3_gcf6139_1"
## [1] "mES_HQ_r1_gcf6578_2"
## [1] "mES_HQ_r2_gcf6139_1"
## [1] "mES_HQ_r2_gcf6578_2"
## [1] "mES_HQ_r3_gcf6139_1"
## [1] "mES_HQ_r3_gcf6578_2"
## [1] "mES_LIF_CH_r1_gcf6578_2"
## [1] "mES_LIF_CH_r2_gcf5927_1"
## [1] "mES_LIF_CH_r2_gcf6578_2"
## [1] "mES_LIF_CH_r3_gcf5927_1"
## [1] "mES_LIF_CH_r3_gcf6578_2"
## [1] "mES_LIF_PD_r1_gcf5927_1"
## [1] "mES_LIF_PD_r1_gcf6578_2"
## [1] "mES_LIF_PD_r2_gcf5927_1"
## [1] "mES_LIF_PD_r2_gcf6578_2"
## [1] "mES_LIF_PD_r3_gcf5927_1"
## [1] "mES_LIF_PD_r3_gcf6578_2"
## [1] "mES_LPS_r2_gcf6139_1"
## [1] "mES_LPS_r3_gcf6139_1"
## [1] "mES_N2B27_Bmp4_r1_gcf6210_1"
## [1] "mES_N2B27_Bmp4_r2_gcf6210_1"
## [1] "mES_N2B27_Bmp4_r3_gcf6210_1"
## [1] "mES_N2B27_RA_r1_gcf6210_1"
## [1] "mES_N2B27_RA_r2_gcf6210_1"
## [1] "mES_N2B27_RA_r3_gcf6210_1"
## [1] "mES_N2B27_Shh_r1_gcf6210_1"
## [1] "mES_N2B27_Shh_r2_gcf6210_1"
## [1] "mES_N2B27_Shh_r3_gcf6210_1"
## [1] "mES_N2B27_r1_gcf5927_1"
## [1] "mES_N2B27_r1_gcf6578_2"
## [1] "mES_N2B27_r2_gcf5927_1"
## [1] "mES_N2B27_r2_gcf6578_2"
## [1] "mES_N2B27_r3_gcf5927_1"
## [1] "mES_N2B27_r3_gcf6578_2"
## [1] "mES_Nutlin_r3_gcf6139_1"
## [1] "mES_RA_r3_gcf6139_1"
## [1] "mES_Shh_r2_gcf6139_1"
## [1] "mES_Shh_r3_gcf6139_1"
## [1] "mES_vitA_r1_gcf5927_1"
## [1] "mES_vitA_r2_gcf5927_1"
## [1] "mES_vitA_r3_gcf5927_1"
## [1] "pMT02_r1_gcf5927_1"
## [1] "pMT02_r1_gcf6301_1"
## [1] "pMT02_r2_gcf5927_1"
## [1] "pMT09_02_r1_gcf6502_1+2"
## [1] "pMT09_02_r1_gcf6578_1+2"
## [1] "pMT09_r1_gcf6502_2"
## [1] "pMT09_r1_gcf6578_2"
## [1] "pMT09_r2_gcf6502_2"
## [1] "pMT09_r3_gcf6578_2"bc_fraction_2 <- bind_rows(bc_fraction_list)
rownames(bc_fraction_2) <- names(bc_fraction_list)
bc_fraction_2 <- bc_fraction_2 %>%
rownames_to_column("sample_id") %>%
pivot_longer(-sample_id, names_to = "cutoff", values_to = "bcs_found") %>%
mutate(cutoff = as.numeric(cutoff))
bc_fraction <- merge(bc_fraction, bc_fraction_2, by = c("sample_id", "cutoff"))
## How many reads match to designed barcodes?
bc_reads <- bc_df %>%
dplyr::select(sample_id, library) %>%
unique() %>%
na.omit()
rpm_cutoff <- data.frame("cutoff" = seq(0.0001,15,3))
bc_reads <- expand_grid(bc_reads, rpm_cutoff) %>%
mutate(sample_id = paste(sample_id, library, sep = "_"))
bc_df$match <- "Yes"
bc_df$match[is.na(bc_df$library)] <- "No"
bc_reads_list <- list()
for (i in unique(bc_reads$sample_id)) {
print(i)
test_x <- bc_df_filt %>%
mutate(sample_id = paste(sample_id, library, sep = "_")) %>%
filter(sample_id == i)
test_y <- bc_df %>%
mutate(sample_id = paste(sample_id, library, sep = "_")) %>%
filter(sample_id == i)
bc_reads_list[[i]] <- lapply(unique(bc_reads$cutoff), function(x) sum(na.omit(test_x$rpm[test_x$rpm >= x])) / sum(test_y$rpm[test_y$rpm >= x]) *100)
names(bc_reads_list[[i]]) <- unique(bc_reads$cutoff)
}## [1] "A549_DMSO_r1_gcf6210_1"
## [1] "A549_DMSO_r3_gcf6210_1"
## [1] "A549_Dex_100_r1_gcf6210_1"
## [1] "A549_Dex_100_r3_gcf6210_1"
## [1] "A549_Nutlin_r1_gcf6210_1"
## [1] "A549_Nutlin_r2_gcf6210_1"
## [1] "A549_Nutlin_r3_gcf6210_1"
## [1] "HepG2_CDCA_r1_gcf6502_1+2"
## [1] "HepG2_CDCA_r2_gcf6502_1+2"
## [1] "HepG2_DMSO_FBS_r1_gcf6502_1+2"
## [1] "HepG2_DMSO_r1_gcf6502_1+2"
## [1] "HepG2_DMSO_r2_gcf6502_1+2"
## [1] "HepG2_DMSO_r3_gcf6502_1+2"
## [1] "HepG2_Rif_r1_gcf6502_1+2"
## [1] "HepG2_Rif_r2_gcf6502_1+2"
## [1] "HepG2_Rif_r3_gcf6502_1+2"
## [1] "HepG2_T09_r1_gcf6502_1+2"
## [1] "HepG2_T09_r2_gcf6502_1+2"
## [1] "HepG2_T09_r3_gcf6502_1+2"
## [1] "HepG2_Wy_r1_gcf6502_1+2"
## [1] "HepG2_Wy_r2_gcf6502_1+2"
## [1] "K562_DMSO_r1_gcf6371_1"
## [1] "K562_DMSO_r1_gcf6502_1+2"
## [1] "K562_DMSO_r2_gcf6502_1+2"
## [1] "K562_DMSO_r3_gcf6502_1+2"
## [1] "NPC_r1_gcf5927_1"
## [1] "NPC_r2_gcf5927_1"
## [1] "NPC_r3_gcf5927_1"
## [1] "U2OS_DMSO_r1_gcf6210_1"
## [1] "U2OS_DMSO_r2_gcf6210_1"
## [1] "U2OS_DMSO_r3_gcf6210_1"
## [1] "U2OS_FK_r1_gcf6210_1"
## [1] "U2OS_FK_r2_gcf6210_1"
## [1] "U2OS_FK_r3_gcf6210_1"
## [1] "U2OS_LPS_r1_gcf6210_1"
## [1] "U2OS_LPS_r2_gcf6210_1"
## [1] "mES_2i_LIF_r1_gcf5927_1"
## [1] "mES_2i_LIF_r1_gcf6578_2"
## [1] "mES_2i_LIF_r2_gcf5927_1"
## [1] "mES_2i_LIF_r2_gcf6578_2"
## [1] "mES_2i_LIF_r3_gcf5927_1"
## [1] "mES_2i_LIF_r3_gcf6139_1"
## [1] "mES_2i_LIF_r3_gcf6578_2"
## [1] "mES_2i_r1_gcf5927_1"
## [1] "mES_2i_r1_gcf6578_2"
## [1] "mES_2i_r2_gcf5927_1"
## [1] "mES_2i_r2_gcf6578_2"
## [1] "mES_2i_r3_gcf5927_1"
## [1] "mES_2i_r3_gcf6578_2"
## [1] "mES_4OHT_r2_gcf6139_1"
## [1] "mES_Bmp4_r3_gcf6139_1"
## [1] "mES_Dex_r3_gcf6139_1"
## [1] "mES_FK_r2_gcf6139_1"
## [1] "mES_FK_r3_gcf6139_1"
## [1] "mES_HQ_r1_gcf6578_2"
## [1] "mES_HQ_r2_gcf6139_1"
## [1] "mES_HQ_r2_gcf6578_2"
## [1] "mES_HQ_r3_gcf6139_1"
## [1] "mES_HQ_r3_gcf6578_2"
## [1] "mES_LIF_CH_r1_gcf6578_2"
## [1] "mES_LIF_CH_r2_gcf5927_1"
## [1] "mES_LIF_CH_r2_gcf6578_2"
## [1] "mES_LIF_CH_r3_gcf5927_1"
## [1] "mES_LIF_CH_r3_gcf6578_2"
## [1] "mES_LIF_PD_r1_gcf5927_1"
## [1] "mES_LIF_PD_r1_gcf6578_2"
## [1] "mES_LIF_PD_r2_gcf5927_1"
## [1] "mES_LIF_PD_r2_gcf6578_2"
## [1] "mES_LIF_PD_r3_gcf5927_1"
## [1] "mES_LIF_PD_r3_gcf6578_2"
## [1] "mES_LPS_r2_gcf6139_1"
## [1] "mES_LPS_r3_gcf6139_1"
## [1] "mES_N2B27_Bmp4_r1_gcf6210_1"
## [1] "mES_N2B27_Bmp4_r2_gcf6210_1"
## [1] "mES_N2B27_Bmp4_r3_gcf6210_1"
## [1] "mES_N2B27_RA_r1_gcf6210_1"
## [1] "mES_N2B27_RA_r2_gcf6210_1"
## [1] "mES_N2B27_RA_r3_gcf6210_1"
## [1] "mES_N2B27_Shh_r1_gcf6210_1"
## [1] "mES_N2B27_Shh_r2_gcf6210_1"
## [1] "mES_N2B27_Shh_r3_gcf6210_1"
## [1] "mES_N2B27_r1_gcf5927_1"
## [1] "mES_N2B27_r1_gcf6578_2"
## [1] "mES_N2B27_r2_gcf5927_1"
## [1] "mES_N2B27_r2_gcf6578_2"
## [1] "mES_N2B27_r3_gcf5927_1"
## [1] "mES_N2B27_r3_gcf6578_2"
## [1] "mES_Nutlin_r3_gcf6139_1"
## [1] "mES_RA_r3_gcf6139_1"
## [1] "mES_Shh_r2_gcf6139_1"
## [1] "mES_Shh_r3_gcf6139_1"
## [1] "mES_vitA_r1_gcf5927_1"
## [1] "mES_vitA_r2_gcf5927_1"
## [1] "mES_vitA_r3_gcf5927_1"
## [1] "pMT02_r1_gcf5927_1"
## [1] "pMT02_r1_gcf6301_1"
## [1] "pMT02_r2_gcf5927_1"
## [1] "pMT09_02_r1_gcf6502_1+2"
## [1] "pMT09_02_r1_gcf6578_1+2"
## [1] "pMT09_r1_gcf6502_2"
## [1] "pMT09_r1_gcf6578_2"
## [1] "pMT09_r2_gcf6502_2"
## [1] "pMT09_r3_gcf6578_2"bc_reads_2 <- bind_rows(bc_reads_list)
rownames(bc_reads_2) <- names(bc_reads_list)
bc_reads_2 <- bc_reads_2 %>%
rownames_to_column("sample_id") %>%
pivot_longer(-sample_id, names_to = "cutoff", values_to = "bc_reads") %>%
mutate(cutoff = as.numeric(cutoff))
bc_reads <- merge(bc_reads, bc_reads_2, by = c("sample_id", "cutoff"))
bc_fraction <- merge(bc_fraction, bc_reads, by = c("sample_id", "cutoff"))
bc_fraction$bcs_found <- as.numeric(bc_fraction$bcs_found)
bc_fraction$bc_reads <- as.numeric(bc_fraction$bc_reads)
#c("#1B998B", "#2D3047", "#FF9B71", "#ECDD7B")
# Plot to evaluate data quality per cutoff
ggplot_custom(bc_fraction) +
geom_point(aes(x = cutoff, y = bcs_found), color = '#1B998B', size = 1) +
geom_line(aes(x = cutoff, y = bcs_found), color = '#1B998B', size = 1) +
geom_point(aes(x = cutoff, y = bc_reads), color = 'black', size = 1) +
geom_line(aes(x = cutoff, y = bc_reads), color = 'black', size = 1) +
xlab("rpm cutoff")+
ylab("total barcodes (green) and matched barcode reads (black) detected (%)")+
facet_wrap(~sample_id)
## 3: What is the correlation of the cDNA bc counts with the pDNA bc counts?
pMT02 <- bc_df_filt %>%
filter(str_detect(sample_id, "pMT02"), library == "1") %>%
dplyr::select(barcode, sample_id, rpm) %>%
spread(sample_id, rpm) %>%
mutate(pMT02 = (pMT02_r1_gcf5927 + pMT02_r1_gcf6301 + pMT02_r2_gcf5927)/3) %>%
dplyr::select(barcode, pMT02)
pMT09 <- bc_df_filt %>%
filter(str_detect(sample_id, "pMT09"), library == "2") %>%
dplyr::select(barcode, sample_id, rpm) %>%
spread(sample_id, rpm) %>%
mutate(pMT09 = (pMT09_r1_gcf6502 + pMT09_r1_gcf6578 + pMT09_r2_gcf6502 + pMT09_r3_gcf6578)/4) %>%
dplyr::select(barcode, pMT09)
pMT09_02 <- bc_df_filt %>%
filter(str_detect(sample_id, "pMT09_02"), library == "1+2") %>%
dplyr::select(barcode, sample_id, rpm) %>%
spread(sample_id, rpm) %>%
mutate(pMT09_02 = (pMT09_02_r1_gcf6502 + pMT09_02_r1_gcf6578)/2) %>%
dplyr::select(barcode, pMT09_02)
pDNA <- merge(pMT02, pMT09, all = T, by = "barcode")
pDNA <- merge(pDNA, pMT09_02, all = T, by = "barcode")
bc_df_2 <- merge(pDNA, bc_df_filt, all = T, by = "barcode")
bc_df_2 <- bc_df_2[!is.na(bc_df_2$sample_id),]
for (i in unique(bc_df_2$library)) {
bc_df_i <- bc_df_2[bc_df_2$library == i,]
if (i == "1") {
p <- ggplot(bc_df_i, aes(x = pMT02, y = rpm)) +
geom_bin2d(bins = 50)+
xlim(0,500) +
ylim(0,2000)+
scale_color_viridis() +
facet_wrap(~sample_id)
print(p)
}
if (i == "2") {
p <- ggplot(bc_df_i, aes(x = pMT09, y = rpm)) +
geom_bin2d(bins = 50)+
xlim(0,500) +
ylim(0,2000)+
scale_color_viridis() +
facet_wrap(~sample_id)
print(p)
}
if (i == "1+2"){
p <- ggplot(bc_df_i, aes(x = pMT09_02, y = rpm)) +
geom_bin2d(bins = 50)+
xlim(0,500) +
ylim(0,2000)+
scale_color_viridis() +
facet_wrap(~sample_id)
print(p)
}
}
# Generate correlation heatmaps
for (i in unique(bc_df_2$library)) {
bc_df_i <- bc_df_2[bc_df_2$library == i,] %>%
dplyr::select(sample_id, rpm, barcode) %>%
unique() %>%
spread(sample_id, rpm) %>%
filter_all(any_vars(!is.na(.))) %>%
column_to_rownames("barcode")
x <- cor(bc_df_i, method = "pearson", use = "pairwise.complete.obs")
p<- pheatmap(x, border = "black", main = i)
print(p)
}
bc_df_2$sample_id <- paste(bc_df_2$sample_id, bc_df_2$library, sep = "_")
cor <- data.frame("sample_id" = unique(bc_df_2$sample_id), "cor" = "", stringsAsFactors = F) %>%
mutate(library = gsub(".*_(.*$)", "\\1", sample_id))
for (i in unique(bc_df_2$sample_id)) {
for (j in unique(bc_df_2$library)) {
if (j == "1") {
cor$cor[cor$sample_id == i & cor$library == j] <- stats::cor(bc_df_2$rpm[bc_df_2$sample_id == i], bc_df_2$pMT02[bc_df_2$sample_id == i], use = "pairwise.complete.obs")
}
if (j == "1+2") {
cor$cor[cor$sample_id == i & cor$library == j] <- stats::cor(bc_df_2$rpm[bc_df_2$sample_id == i], bc_df_2$pMT09_02[bc_df_2$sample_id == i], use = "pairwise.complete.obs")
}
if (j == "2") {
cor$cor[cor$sample_id == i & cor$library == j] <- stats::cor(bc_df_2$rpm[bc_df_2$sample_id == i], bc_df_2$pMT09[bc_df_2$sample_id == i], use = "pairwise.complete.obs")
}
}
}
cor_2 <- cor %>%
mutate(sample_id = gsub("(.*)_.*$", "\\1", sample_id))
bc_df <- merge(bc_df, cor_2, by = c("sample_id", "library"), all = T)
## 4: Correlation plots of the replicates
## Combine replicates of normalized data in 3 different columns
bc_df_rep <- bc_df[!is.na(bc_df$tf),] %>%
dplyr::select(replicate, rpm, barcode, gcf, condition, library, neg_ctrls) %>%
unique() %>%
mutate(replicate = paste(library, replicate, sep = "_")) %>%
spread(replicate, rpm)
colors <- c("#2D3047", "#1B998B")
bc_df_rep <- bc_df_rep[!is.na(bc_df_rep$library),]
for (i in unique(bc_df_rep$library)) {
p <- ggscatter(bc_df_rep[bc_df_rep$library == i,], x = paste(i, "r1", sep = "_"), y = paste(i, "r2", sep = "_"),
add = "reg.line",
color = "neg_ctrls",
size = 1,
add.params = list(color = "blue", fill = "lightgray"), title = paste("rep1 vs rep2 - library: ", i, sep = ""),
conf.int = TRUE, ylab = "rep2", xlab = "rep1") +
stat_cor(method = "pearson", label.x = 4, label.y = 0) +
geom_abline(linetype = "dashed") +
xlim(0,4000) + ylim(0,4000) +
scale_color_manual(values = colors)+
facet_wrap(~condition)
print(p)
}
for (i in unique(bc_df_rep$library)) {
p <- ggscatter(bc_df_rep[bc_df_rep$library == i,], x = paste(i, "r1", sep = "_"), y = paste(i, "r3", sep = "_"),
add = "reg.line",
color = "neg_ctrls",
size = 1,
add.params = list(color = "blue", fill = "lightgray"), title = paste("rep1 vs rep3 - library: ", i, sep = ""),
conf.int = TRUE, ylab = "rep3", xlab = "rep1") +
stat_cor(method = "pearson", label.x = 4, label.y = 0) +
geom_abline(linetype = "dashed") +
xlim(0,4000) + ylim(0,4000) +
scale_color_manual(values = colors)+
facet_wrap(~condition)
print(p)
}
for (i in unique(bc_df_rep$library)) {
p <- ggscatter(bc_df_rep[bc_df_rep$library == i,], x = paste(i, "r2", sep = "_"), y = paste(i, "r3", sep = "_"),
add = "reg.line",
color = "neg_ctrls",
size = 1,
add.params = list(color = "blue", fill = "lightgray"), title = paste("rep2 vs rep3 - library: ", i, sep = ""),
conf.int = TRUE, ylab = "rep3", xlab = "rep2") +
stat_cor(method = "pearson", label.x = 4, label.y = 0) +
geom_abline(linetype = "dashed") +
xlim(0,4000) + ylim(0,4000) +
scale_color_manual(values = colors)+
facet_wrap(~condition)
print(p)
}
Sample filtering
# Remove samples with low dynamic range (this most likely is due to unhappy cells, pDNA contamination or some other mistake in the sample prep)
for (i in unique(bc_df$sample_id)) {
bc_df$n_bc[bc_df$sample_id == i] <- length(bc_df$barcode[bc_df$rpm > 500 & bc_df$sample_id == i])
}
bc_df <- bc_df %>%
filter(n_bc > 75 | str_detect(sample_id, "pMT")) %>%
dplyr::select(-n_bc)
# Remove samples with high pDNA contamination (most likely those samples were already removed in the previous step as this is a bit redundant)
bc_df <- bc_df %>%
filter(cor <= 0.5 | str_detect(sample_id, "pMT")) %>%
dplyr::select(-cor)
# Manually remove weird K562 sample
bc_df <- bc_df %>%
filter(sample_id != "K562_DMSO_r3_gcf6502")
# Remove all non-matching reads
bc_df <- bc_df[!is.na(bc_df$tf),]Normalization of barcode counts:
Divide cDNA barcode counts through pDNA barcode counts to get activity
# Prepare pDNA data and remove all barcodes with less than 20 counts
pMT02 <- bc_df %>%
filter(str_detect(sample_id, "pMT02"), library == "1") %>%
filter(starcode_counts > 20) %>%
dplyr::select(barcode, sample_id, rpm) %>%
spread(sample_id, rpm) %>%
mutate(pMT02 = dplyr::select(., -matches("barcode")) %>% rowMeans(., na.rm = T)) %>%
dplyr::select(barcode, pMT02)
pMT09 <- bc_df %>%
filter(str_detect(sample_id, "pMT09"), library == "2") %>%
filter(starcode_counts > 20) %>%
dplyr::select(barcode, sample_id, rpm) %>%
spread(sample_id, rpm) %>%
mutate(pMT09 = dplyr::select(., -matches("barcode")) %>% rowMeans(., na.rm = T)) %>%
dplyr::select(barcode, pMT09)
pMT09_02 <- bc_df %>%
filter(str_detect(sample_id, "pMT09_02"), library == "1+2") %>%
filter(starcode_counts > 20) %>%
dplyr::select(barcode, sample_id, rpm) %>%
spread(sample_id, rpm) %>%
mutate(pMT09_02 = dplyr::select(., -matches("barcode")) %>% rowMeans(., na.rm = T)) %>%
dplyr::select(barcode, pMT09_02)
pDNA <- merge(pMT02, pMT09, all = T)
pDNA <- merge(pDNA, pMT09_02, all = T)
# Add pDNA data as separate column - for both library 1 and library 2
bc_df <- merge(bc_df, pDNA, by = "barcode")
# Compute activity by dividing cDNA bc counts through pDNA bc counts
bc_df$activity[bc_df$library == "1"] <- bc_df$rpm[bc_df$library == "1"] / bc_df$pMT02[bc_df$library == "1"]
bc_df$activity[bc_df$library == "1+2"] <- bc_df$rpm[bc_df$library == "1+2"] / bc_df$pMT09_02[bc_df$library == "1+2"]
bc_df$activity[bc_df$library == "2"] <- bc_df$rpm[bc_df$library == "2"] / bc_df$pMT09[bc_df$library == "2"]
# Remove rows that could not be computed due to too little pDNA counts
bc_df <- bc_df %>%
drop_na(activity)Calculate mean activity - filter out outlier barcodes
# First identify and remove outlier barcodes - this removes the noise created by faulty barcode clustering etc.
## Calculate mean and SD for each reporter
bc_df_cDNA <- bc_df %>%
filter(str_detect(sample_id, "pMT", negate = T), str_detect(sample_id, "pDNA", negate = T))
bc_df_cDNA$reporter_id <- paste(bc_df_cDNA$tf, bc_df_cDNA$spacing,
bc_df_cDNA$distance, bc_df_cDNA$promoter,
bc_df_cDNA$background, sep = "_")
bc_df_cDNA$mean_activity <- ave(bc_df_cDNA$activity, bc_df_cDNA$reporter_id,
bc_df_cDNA$sample_id, FUN =
function(x) mean(x))
bc_df_cDNA$sd_activity <- ave(bc_df_cDNA$activity, bc_df_cDNA$reporter_id,
bc_df_cDNA$sample_id, FUN =
function(x) sd(x))
## Remove data points that are 2xSD away from the mean
bc_df_cDNA$upper_activity <- bc_df_cDNA$mean_activity + (2 * bc_df_cDNA$sd_activity)
bc_df_cDNA$lower_activity <- bc_df_cDNA$mean_activity - (2 * bc_df_cDNA$sd_activity)
bc_df_cDNA$low_outlier <- bc_df_cDNA$activity - bc_df_cDNA$lower_activity
bc_df_cDNA$high_outlier <- bc_df_cDNA$upper_activity - bc_df_cDNA$activity
## Plot effect of highest outlier bc -> SNP in minP promoter
outlier <- bc_df_cDNA[bc_df_cDNA$reporter_id == "ZFP42_5bp_21bp_minP_3",] %>%
dplyr::select(barcode_number, activity, sample) %>%
unique()
ggplot_custom(outlier, aes(x = barcode_number, y = activity)) +
geom_quasirandom() +
xlab("barcode #") +
labs(title = "Zfp42 reporter - TATA-box minP mutated",
subtitle = "bc8 AGAGGGTATATAAT -> AGAGGGGATATAAT")
## Plot effect of highest outlier bc -> Elk1 outlier
outlier <- bc_df_cDNA[bc_df_cDNA$reporter_id == "ELK1_5bp_21bp_mCMV_2",] %>%
dplyr::select(barcode_number, activity) %>%
unique()
ggplot_custom(outlier, aes(x = barcode_number, y = activity)) +
geom_quasirandom()+
xlab("barcode #") +
labs(title = "Elk1 reporter - bc1 attached to Pax6 reporter")
## Plot effect of highest outlier bc -> Elk1 outlier
outlier <- bc_df_cDNA[bc_df_cDNA$reporter_id == "TCF3_5bp_10bp_hBGm_3",] %>%
dplyr::select(barcode_number, activity) %>%
unique()
ggplot_custom(outlier, aes(x = barcode_number, y = activity)) +
geom_quasirandom() +
xlab("barcode #") +
labs(title = "Tcf3 reporter - bc1 attached to multiple (less active) reporters")
## Choose arbitrary cutoff to get rid of most extreme outliers
bc_df_cDNA_filt <- bc_df_cDNA[bc_df_cDNA$low_outlier > -0.3 & bc_df_cDNA$high_outlier > -2 & bc_df_cDNA$sd_activity < 100,]
## Recalculate mean and sd
bc_df_cDNA_filt$mean_activity <- ave(bc_df_cDNA_filt$activity, bc_df_cDNA_filt$reporter_id,
bc_df_cDNA_filt$sample_id, FUN =
function(x) mean(x))
bc_df_cDNA_filt$sd_activity <- ave(bc_df_cDNA_filt$activity, bc_df_cDNA_filt$reporter_id,
bc_df_cDNA_filt$sample_id, FUN =
function(x) sd(x))Scaling data
## Compute activity relative to minimal promoter background
bc_df_cDNA_filt_neg <- bc_df_cDNA_filt %>%
dplyr::select(sample_id, activity, reporter_id, tf, promoter) %>%
filter(str_detect(tf, "RANDOM")) %>%
unique() %>%
mutate(activity = ave(activity, promoter, sample_id, FUN = function(x) mean(x))) %>%
dplyr::select(-reporter_id) %>%
unique() %>%
dplyr::select("tf_activity2" = activity, promoter, sample_id) %>%
unique()
### For library 2 I don't have random motifs, so I will take the mean of the mutated motifs instead (get rid of the 2% highest active mutated controls)
bc_df_cDNA_filt_neg2 <- bc_df_cDNA_filt %>%
dplyr::select(sample_id, reporter_id, tf, promoter, neg_ctrls, mean_activity) %>%
filter(neg_ctrls == "Yes") %>%
unique() %>%
group_by(sample_id, promoter) %>%
dplyr::top_frac(-0.75, mean_activity) %>%
mutate(activity = ave(mean_activity, promoter, sample_id, FUN = function(x) mean(x))) %>%
dplyr::select(-reporter_id) %>%
unique() %>%
dplyr::select("tf_activity" = activity, promoter, sample_id) %>%
unique()
x <- merge(bc_df_cDNA_filt_neg, bc_df_cDNA_filt_neg2)
plot(x$tf_activity, x$tf_activity2)
### Normalization by random has some outliers (gcf6502) -> I can better for now normalize by mutated motifs since I also have data for all samples from that
bc_df_cDNA_filt <- merge(bc_df_cDNA_filt, bc_df_cDNA_filt_neg2, by = c("sample_id", "promoter"))
bc_df_cDNA_filt <- bc_df_cDNA_filt %>%
mutate(minP_activity = activity / tf_activity)
### Compute a p-value for each reporter with respect to the background minimal promoter activity
bc_df_cDNA_filt$library[is.na(bc_df_cDNA_filt$library)] <- "1+2"
bc_df_cDNA_filt_neg2 <- bc_df_cDNA_filt %>%
dplyr::select(sample_id, reporter_id, tf, promoter, neg_ctrls, mean_activity, condition, library) %>%
filter(neg_ctrls == "Yes") %>%
unique() %>%
group_by(sample_id, promoter) %>%
dplyr::top_frac(-0.75, mean_activity) %>%
mutate(id = paste(condition, promoter, library, sep = "_"))
bc_df_cDNA_filt <- bc_df_cDNA_filt %>%
mutate(reporter_id2 = gsub("(.*)_.*(_[1-3]{1}$)", "\\1\\2", reporter_id),
id = paste(condition, promoter, library, sep = "_"))
pval_list <- list()
for (i in unique(bc_df_cDNA_filt$reporter_id2)) {
print(i)
test_x <- bc_df_cDNA_filt[bc_df_cDNA_filt$reporter_id2 == i,]
ids <- unique(bc_df_cDNA_filt$id[bc_df_cDNA_filt$reporter_id2 == i])
pval_list[[i]] <- lapply(ids, function(x) t.test(test_x$activity[test_x$id == x],
bc_df_cDNA_filt_neg2$mean_activity[bc_df_cDNA_filt_neg2$id == x])$p.value)
names(pval_list[[i]]) <- ids
}## [1] "NFE2L2_10bp_21bp_1"
## [1] "ZFP42_neg_10bp_21bp_1"
## [1] "NFE2L2_neg_10bp_21bp_1"
## [1] "SP1_10bp_21bp_1"
## [1] "ZFX_10bp_21bp_1"
## [1] "TP53_10bp_21bp_1"
## [1] "STAT3_10bp_21bp_1"
## [1] "SP1_neg_10bp_21bp_1"
## [1] "SMAD4_10bp_21bp_1"
## [1] "RBPJ_10bp_21bp_1"
## [1] "ELK1_10bp_21bp_1"
## [1] "PAX6_10bp_21bp_1"
## [1] "PAX6_neg_10bp_21bp_1"
## [1] "TFCP2L1_neg_10bp_21bp_1"
## [1] "GLI1_10bp_21bp_1"
## [1] "ELK1_neg_10bp_21bp_1"
## [1] "ESRRB_10bp_21bp_1"
## [1] "RANDOM3_10bp_21bp_1"
## [1] "OTX1_neg_10bp_21bp_1"
## [1] "GBX2_neg_10bp_21bp_1"
## [1] "IRF3_10bp_21bp_1"
## [1] "TFCP2L1_10bp_21bp_1"
## [1] "NFKB1_10bp_21bp_1"
## [1] "CREB1_neg_10bp_21bp_1"
## [1] "KLF4_10bp_21bp_1"
## [1] "RANDOM1_10bp_21bp_1"
## [1] "ESRRB_neg_10bp_21bp_1"
## [1] "KLF4_neg_10bp_21bp_1"
## [1] "IRX3_neg_10bp_21bp_1"
## [1] "ZFX_neg_10bp_21bp_1"
## [1] "STAT3_neg_10bp_21bp_1"
## [1] "CREB1_10bp_21bp_1"
## [1] "GLI1_neg_10bp_21bp_1"
## [1] "NFYA_10bp_21bp_1"
## [1] "NFYA_neg_10bp_21bp_1"
## [1] "OTX1_10bp_21bp_1"
## [1] "IRF3_neg_10bp_21bp_1"
## [1] "TCF3_neg_10bp_21bp_1"
## [1] "RANDOM2_10bp_21bp_1"
## [1] "ZFP42_10bp_21bp_1"
## [1] "RARA_neg_10bp_21bp_1"
## [1] "TP53_neg_10bp_21bp_1"
## [1] "IRX3_10bp_21bp_1"
## [1] "SMAD4_neg_10bp_21bp_1"
## [1] "TCF3_10bp_21bp_1"
## [1] "NFKB1_neg_10bp_21bp_1"
## [1] "TFCP2L1_neg_5bp_21bp_1"
## [1] "ZFX_10bp_10bp_1"
## [1] "KLF4_neg_5bp_10bp_3"
## [1] "NFKB1_neg_5bp_21bp_3"
## [1] "ELK1_5bp_10bp_1"
## [1] "OTX1_5bp_21bp_3"
## [1] "NFKB1_5bp_21bp_1"
## [1] "CREB1_10bp_10bp_3"
## [1] "NFE2L2_5bp_10bp_2"
## [1] "ZFP42_neg_10bp_10bp_1"
## [1] "NFKB1_5bp_21bp_2"
## [1] "ZFP42_5bp_21bp_2"
## [1] "NFE2L2_10bp_10bp_2"
## [1] "CREB1_neg_5bp_21bp_1"
## [1] "ZFX_5bp_21bp_2"
## [1] "ZFP42_neg_5bp_21bp_1"
## [1] "RARA_5bp_21bp_3"
## [1] "ELK1_neg_5bp_10bp_2"
## [1] "TFCP2L1_5bp_21bp_1"
## [1] "ZFX_10bp_21bp_2"
## [1] "STAT3_neg_10bp_10bp_2"
## [1] "ZFP42_neg_10bp_21bp_3"
## [1] "TP53_10bp_21bp_2"
## [1] "SP1_10bp_21bp_2"
## [1] "OTX1_10bp_21bp_2"
## [1] "CREB1_10bp_21bp_3"
## [1] "ESRRB_neg_5bp_10bp_1"
## [1] "KLF4_neg_10bp_21bp_3"
## [1] "NFE2L2_10bp_21bp_2"
## [1] "ZFX_neg_10bp_10bp_2"
## [1] "ZFP42_neg_5bp_10bp_3"
## [1] "CREB1_5bp_10bp_2"
## [1] "RBPJ_neg_5bp_10bp_3"
## [1] "ZFP42_10bp_10bp_1"
## [1] "NEUROG2_10bp_21bp_3"
## [1] "RBPJ_10bp_21bp_3"
## [1] "SMAD4_neg_5bp_10bp_1"
## [1] "NFYA_neg_10bp_21bp_3"
## [1] "NFYA_neg_10bp_10bp_2"
## [1] "NR3C1_5bp_10bp_3"
## [1] "NFYA_10bp_21bp_2"
## [1] "TFCP2L1_neg_10bp_21bp_2"
## [1] "SMAD4_neg_10bp_21bp_2"
## [1] "SMAD4_5bp_21bp_3"
## [1] "TCF3_neg_10bp_21bp_3"
## [1] "NFE2L2_10bp_21bp_3"
## [1] "KLF4_neg_10bp_21bp_2"
## [1] "RARA_neg_5bp_10bp_3"
## [1] "STAT3_5bp_10bp_1"
## [1] "GLI1_neg_5bp_21bp_1"
## [1] "KLF4_5bp_21bp_2"
## [1] "ESRRB_10bp_10bp_2"
## [1] "IRX3_neg_10bp_10bp_2"
## [1] "PAX6_5bp_10bp_2"
## [1] "NFE2L2_10bp_10bp_3"
## [1] "SMAD4_neg_5bp_21bp_3"
## [1] "KLF4_10bp_21bp_3"
## [1] "RANDOM3_5bp_10bp_3"
## [1] "RANDOM2_5bp_10bp_3"
## [1] "CREB1_5bp_10bp_3"
## [1] "GBX2_neg_5bp_21bp_1"
## [1] "NEUROG2_10bp_10bp_2"
## [1] "TCF3_neg_5bp_10bp_3"
## [1] "IRX3_neg_5bp_10bp_3"
## [1] "NFE2L2_neg_5bp_10bp_2"
## [1] "NFKB1_10bp_10bp_3"
## [1] "OTX1_neg_5bp_21bp_1"
## [1] "TP53_10bp_10bp_3"
## [1] "KLF4_neg_5bp_10bp_1"
## [1] "ESRRB_neg_10bp_10bp_1"
## [1] "TFCP2L1_neg_5bp_10bp_2"
## [1] "STAT3_10bp_21bp_3"
## [1] "RBPJ_10bp_10bp_2"
## [1] "RANDOM1_5bp_21bp_1"
## [1] "SMAD4_10bp_10bp_3"
## [1] "CREB1_5bp_10bp_1"
## [1] "ZFP42_neg_10bp_10bp_2"
## [1] "PAX6_neg_10bp_10bp_3"
## [1] "TFCP2L1_neg_5bp_21bp_3"
## [1] "TCF3_neg_10bp_21bp_2"
## [1] "GLI1_neg_10bp_10bp_1"
## [1] "OTX1_10bp_10bp_3"
## [1] "RBPJ_neg_5bp_10bp_2"
## [1] "HOMEZ_5bp_21bp_3"
## [1] "TFCP2L1_10bp_10bp_2"
## [1] "NFE2L2_neg_10bp_21bp_3"
## [1] "ZFX_neg_10bp_10bp_3"
## [1] "TFCP2L1_5bp_10bp_3"
## [1] "NR3C1_5bp_10bp_2"
## [1] "ESRRB_10bp_10bp_3"
## [1] "IRF3_neg_5bp_10bp_1"
## [1] "PAX6_5bp_21bp_1"
## [1] "TFCP2L1_neg_5bp_10bp_3"
## [1] "RANDOM1_10bp_21bp_3"
## [1] "NFKB1_5bp_10bp_1"
## [1] "NFYA_neg_5bp_21bp_3"
## [1] "HOMEZ_10bp_10bp_1"
## [1] "STAT3_10bp_10bp_2"
## [1] "TP53_5bp_21bp_2"
## [1] "OTX1_10bp_10bp_2"
## [1] "SMAD4_10bp_10bp_2"
## [1] "PAX6_5bp_21bp_2"
## [1] "GBX2_neg_5bp_21bp_3"
## [1] "OTX1_neg_5bp_10bp_3"
## [1] "RANDOM1_5bp_10bp_2"
## [1] "IRF3_neg_5bp_10bp_3"
## [1] "IRF3_10bp_10bp_3"
## [1] "GLI1_neg_10bp_10bp_2"
## [1] "KLF4_neg_10bp_10bp_3"
## [1] "RARA_10bp_21bp_3"
## [1] "NFE2L2_5bp_21bp_1"
## [1] "RANDOM3_10bp_10bp_2"
## [1] "CREB1_10bp_21bp_2"
## [1] "STAT3_neg_10bp_21bp_2"
## [1] "TFCP2L1_10bp_21bp_2"
## [1] "RBPJ_neg_10bp_21bp_3"
## [1] "NFE2L2_neg_5bp_21bp_1"
## [1] "RANDOM1_5bp_10bp_1"
## [1] "TP53_5bp_10bp_3"
## [1] "CREB1_neg_10bp_21bp_3"
## [1] "RBPJ_5bp_10bp_3"
## [1] "NEUROG2_neg_10bp_10bp_2"
## [1] "TCF3_5bp_10bp_3"
## [1] "GLI1_neg_5bp_10bp_2"
## [1] "ZFP42_5bp_21bp_3"
## [1] "IRF3_neg_10bp_21bp_3"
## [1] "STAT3_5bp_21bp_3"
## [1] "CREB1_neg_5bp_10bp_3"
## [1] "NFE2L2_5bp_21bp_3"
## [1] "STAT3_neg_10bp_10bp_3"
## [1] "ELK1_10bp_10bp_1"
## [1] "NFE2L2_neg_10bp_10bp_1"
## [1] "GBX2_5bp_21bp_3"
## [1] "CREB1_5bp_21bp_2"
## [1] "ZFP42_5bp_10bp_2"
## [1] "ESRRB_5bp_21bp_1"
## [1] "ZFP42_10bp_10bp_2"
## [1] "ELK1_5bp_21bp_2"
## [1] "NFKB1_neg_5bp_21bp_1"
## [1] "TCF3_neg_10bp_10bp_1"
## [1] "RANDOM3_5bp_10bp_2"
## [1] "PAX6_neg_5bp_10bp_3"
## [1] "ELK1_5bp_10bp_2"
## [1] "KLF4_5bp_10bp_3"
## [1] "HOMEZ_5bp_10bp_2"
## [1] "OTX1_neg_5bp_10bp_2"
## [1] "KLF4_neg_5bp_21bp_2"
## [1] "NR3C1_10bp_10bp_3"
## [1] "NFKB1_neg_5bp_10bp_2"
## [1] "RANDOM1_5bp_10bp_3"
## [1] "KLF4_5bp_21bp_1"
## [1] "STAT3_10bp_21bp_2"
## [1] "RANDOM2_5bp_21bp_3"
## [1] "TP53_5bp_21bp_3"
## [1] "NFYA_neg_10bp_10bp_3"
## [1] "ESRRB_neg_5bp_10bp_2"
## [1] "ESRRB_neg_5bp_10bp_3"
## [1] "NR3C1_neg_5bp_21bp_2"
## [1] "ZFX_5bp_10bp_2"
## [1] "GBX2_neg_10bp_21bp_3"
## [1] "GLI1_5bp_21bp_3"
## [1] "NFKB1_5bp_21bp_3"
## [1] "STAT3_5bp_10bp_2"
## [1] "RANDOM3_5bp_10bp_1"
## [1] "KLF4_5bp_10bp_1"
## [1] "GBX2_neg_5bp_10bp_1"
## [1] "ELK1_5bp_21bp_3"
## [1] "GLI1_10bp_21bp_3"
## [1] "STAT3_10bp_10bp_3"
## [1] "NEUROG2_5bp_10bp_2"
## [1] "GBX2_5bp_21bp_2"
## [1] "NFKB1_neg_10bp_10bp_1"
## [1] "PAX6_neg_5bp_21bp_1"
## [1] "NFKB1_5bp_10bp_3"
## [1] "RARA_5bp_10bp_3"
## [1] "SP1_neg_5bp_10bp_2"
## [1] "KLF4_neg_10bp_10bp_2"
## [1] "RBPJ_5bp_10bp_2"
## [1] "STAT3_5bp_10bp_3"
## [1] "SP1_5bp_10bp_2"
## [1] "ZFX_5bp_21bp_3"
## [1] "NFE2L2_neg_5bp_21bp_3"
## [1] "ESRRB_neg_5bp_21bp_2"
## [1] "RARA_5bp_10bp_2"
## [1] "SP1_neg_10bp_10bp_3"
## [1] "NFYA_5bp_21bp_3"
## [1] "NEUROG2_5bp_21bp_2"
## [1] "TCF3_neg_5bp_21bp_3"
## [1] "NEUROG2_10bp_21bp_1"
## [1] "GLI1_neg_5bp_21bp_2"
## [1] "GBX2_10bp_21bp_1"
## [1] "TCF3_neg_5bp_21bp_1"
## [1] "GBX2_neg_5bp_21bp_2"
## [1] "SP1_5bp_10bp_3"
## [1] "RANDOM1_10bp_10bp_1"
## [1] "OTX1_10bp_21bp_3"
## [1] "RANDOM2_10bp_21bp_2"
## [1] "IRF3_5bp_21bp_1"
## [1] "NFYA_10bp_10bp_1"
## [1] "ZFX_10bp_10bp_2"
## [1] "IRF3_10bp_21bp_3"
## [1] "NFYA_5bp_21bp_1"
## [1] "ELK1_neg_5bp_21bp_3"
## [1] "ELK1_neg_5bp_21bp_2"
## [1] "RARA_neg_5bp_10bp_2"
## [1] "GBX2_10bp_10bp_3"
## [1] "NR3C1_10bp_10bp_2"
## [1] "NFE2L2_neg_10bp_10bp_3"
## [1] "NFYA_10bp_21bp_3"
## [1] "GBX2_5bp_10bp_1"
## [1] "ESRRB_5bp_10bp_1"
## [1] "NFYA_neg_5bp_10bp_3"
## [1] "IRX3_10bp_10bp_2"
## [1] "NFE2L2_neg_5bp_10bp_1"
## [1] "IRX3_neg_10bp_10bp_3"
## [1] "IRF3_5bp_10bp_1"
## [1] "GLI1_10bp_10bp_3"
## [1] "ESRRB_5bp_21bp_3"
## [1] "NFE2L2_neg_10bp_21bp_2"
## [1] "CREB1_5bp_21bp_1"
## [1] "GLI1_neg_10bp_10bp_3"
## [1] "RANDOM2_10bp_10bp_1"
## [1] "KLF4_neg_5bp_21bp_1"
## [1] "ZFP42_10bp_10bp_3"
## [1] "SMAD4_5bp_10bp_3"
## [1] "ZFP42_5bp_10bp_1"
## [1] "GBX2_10bp_10bp_2"
## [1] "TP53_neg_10bp_10bp_3"
## [1] "ELK1_10bp_10bp_2"
## [1] "GLI1_10bp_10bp_2"
## [1] "RANDOM3_5bp_21bp_3"
## [1] "TP53_10bp_10bp_1"
## [1] "RANDOM3_10bp_21bp_3"
## [1] "ZFX_5bp_21bp_1"
## [1] "RBPJ_10bp_21bp_2"
## [1] "RARA_neg_5bp_21bp_1"
## [1] "ZFP42_neg_5bp_21bp_3"
## [1] "ZFP42_neg_5bp_10bp_2"
## [1] "STAT3_10bp_10bp_1"
## [1] "NR3C1_neg_10bp_21bp_1"
## [1] "IRX3_10bp_10bp_3"
## [1] "RANDOM1_10bp_10bp_2"
## [1] "ZFX_neg_5bp_10bp_3"
## [1] "PAX6_neg_5bp_10bp_2"
## [1] "OTX1_neg_10bp_21bp_2"
## [1] "IRF3_10bp_21bp_2"
## [1] "PAX6_neg_5bp_21bp_2"
## [1] "TCF3_10bp_10bp_3"
## [1] "SP1_neg_5bp_10bp_3"
## [1] "NFKB1_neg_10bp_21bp_2"
## [1] "TP53_neg_5bp_10bp_1"
## [1] "TP53_5bp_10bp_2"
## [1] "IRX3_neg_10bp_10bp_1"
## [1] "ELK1_10bp_10bp_3"
## [1] "PAX6_10bp_10bp_3"
## [1] "KLF4_neg_5bp_10bp_2"
## [1] "GLI1_5bp_10bp_2"
## [1] "NFKB1_neg_5bp_10bp_1"
## [1] "ZFX_10bp_21bp_3"
## [1] "TCF3_5bp_21bp_1"
## [1] "TFCP2L1_10bp_21bp_3"
## [1] "KLF4_10bp_10bp_3"
## [1] "OTX1_neg_10bp_10bp_2"
## [1] "ELK1_neg_5bp_21bp_1"
## [1] "OTX1_10bp_10bp_1"
## [1] "NFYA_neg_5bp_21bp_2"
## [1] "ZFX_neg_10bp_10bp_1"
## [1] "TFCP2L1_neg_10bp_10bp_2"
## [1] "TFCP2L1_neg_5bp_21bp_2"
## [1] "GBX2_neg_10bp_21bp_2"
## [1] "OTX1_neg_10bp_10bp_1"
## [1] "ZFX_neg_5bp_21bp_3"
## [1] "GBX2_neg_5bp_10bp_2"
## [1] "STAT3_neg_5bp_10bp_2"
## [1] "TFCP2L1_neg_5bp_10bp_1"
## [1] "KLF4_5bp_10bp_2"
## [1] "SP1_neg_5bp_21bp_2"
## [1] "NR3C1_neg_5bp_21bp_1"
## [1] "CREB1_neg_5bp_10bp_2"
## [1] "GBX2_neg_5bp_10bp_3"
## [1] "OTX1_neg_5bp_10bp_1"
## [1] "ESRRB_5bp_10bp_2"
## [1] "NEUROG2_neg_5bp_21bp_1"
## [1] "RARA_5bp_10bp_1"
## [1] "TFCP2L1_10bp_10bp_1"
## [1] "SMAD4_neg_10bp_10bp_3"
## [1] "CREB1_5bp_21bp_3"
## [1] "RARA_neg_10bp_21bp_3"
## [1] "STAT3_neg_5bp_21bp_3"
## [1] "NFKB1_neg_5bp_10bp_3"
## [1] "RBPJ_neg_5bp_21bp_3"
## [1] "HOMEZ_neg_10bp_21bp_3"
## [1] "RBPJ_neg_10bp_10bp_2"
## [1] "SP1_neg_10bp_10bp_2"
## [1] "NFKB1_neg_10bp_10bp_2"
## [1] "ZFP42_neg_10bp_10bp_3"
## [1] "PAX6_10bp_21bp_3"
## [1] "TFCP2L1_5bp_10bp_2"
## [1] "NFYA_5bp_10bp_3"
## [1] "NR3C1_5bp_21bp_3"
## [1] "PAX6_neg_5bp_21bp_3"
## [1] "GBX2_neg_10bp_10bp_3"
## [1] "KLF4_neg_5bp_21bp_3"
## [1] "RANDOM3_5bp_21bp_2"
## [1] "KLF4_10bp_10bp_1"
## [1] "IRX3_10bp_10bp_1"
## [1] "STAT3_neg_10bp_21bp_3"
## [1] "TP53_neg_10bp_21bp_2"
## [1] "IRX3_neg_10bp_21bp_3"
## [1] "ZFP42_neg_5bp_21bp_2"
## [1] "ZFP42_10bp_21bp_3"
## [1] "OTX1_neg_5bp_21bp_2"
## [1] "IRF3_5bp_21bp_3"
## [1] "NR3C1_5bp_21bp_1"
## [1] "RANDOM2_5bp_10bp_1"
## [1] "GBX2_10bp_21bp_3"
## [1] "RBPJ_neg_10bp_21bp_2"
## [1] "CREB1_10bp_10bp_1"
## [1] "SP1_10bp_10bp_3"
## [1] "NFE2L2_5bp_21bp_2"
## [1] "NEUROG2_5bp_21bp_3"
## [1] "SP1_neg_5bp_21bp_1"
## [1] "RBPJ_5bp_10bp_1"
## [1] "NFYA_5bp_10bp_1"
## [1] "ELK1_5bp_21bp_1"
## [1] "SP1_10bp_10bp_1"
## [1] "SP1_5bp_21bp_3"
## [1] "TP53_5bp_10bp_1"
## [1] "TFCP2L1_5bp_21bp_2"
## [1] "RARA_10bp_10bp_2"
## [1] "PAX6_10bp_21bp_2"
## [1] "ZFX_neg_5bp_10bp_2"
## [1] "HOMEZ_5bp_10bp_3"
## [1] "RANDOM1_10bp_10bp_3"
## [1] "ESRRB_neg_10bp_21bp_3"
## [1] "RARA_neg_10bp_10bp_2"
## [1] "STAT3_neg_5bp_21bp_2"
## [1] "HOMEZ_neg_5bp_10bp_1"
## [1] "TP53_neg_5bp_21bp_1"
## [1] "RARA_neg_10bp_21bp_2"
## [1] "PAX6_5bp_10bp_3"
## [1] "RBPJ_neg_10bp_21bp_1"
## [1] "SMAD4_neg_5bp_21bp_2"
## [1] "ESRRB_neg_10bp_10bp_3"
## [1] "TP53_neg_10bp_10bp_1"
## [1] "PAX6_5bp_10bp_1"
## [1] "ELK1_neg_10bp_21bp_3"
## [1] "NFYA_5bp_10bp_2"
## [1] "NFKB1_10bp_21bp_3"
## [1] "TCF3_neg_10bp_10bp_3"
## [1] "IRF3_neg_5bp_21bp_1"
## [1] "GBX2_neg_10bp_10bp_2"
## [1] "SP1_5bp_21bp_2"
## [1] "TP53_neg_10bp_10bp_2"
## [1] "GLI1_5bp_21bp_2"
## [1] "NEUROG2_neg_10bp_10bp_3"
## [1] "CREB1_neg_10bp_10bp_2"
## [1] "GLI1_neg_5bp_10bp_1"
## [1] "KLF4_10bp_21bp_2"
## [1] "NEUROG2_neg_10bp_21bp_3"
## [1] "ELK1_neg_5bp_10bp_1"
## [1] "TFCP2L1_5bp_21bp_3"
## [1] "RBPJ_5bp_21bp_1"
## [1] "SP1_5bp_21bp_1"
## [1] "ELK1_10bp_21bp_2"
## [1] "IRX3_10bp_21bp_3"
## [1] "NFKB1_5bp_10bp_2"
## [1] "NFE2L2_10bp_10bp_1"
## [1] "TCF3_10bp_10bp_1"
## [1] "NEUROG2_5bp_10bp_1"
## [1] "RBPJ_neg_5bp_10bp_1"
## [1] "ELK1_5bp_10bp_3"
## [1] "ESRRB_10bp_21bp_2"
## [1] "OTX1_neg_10bp_21bp_3"
## [1] "STAT3_neg_5bp_10bp_1"
## [1] "GBX2_10bp_21bp_2"
## [1] "NEUROG2_neg_5bp_21bp_3"
## [1] "ELK1_neg_10bp_21bp_2"
## [1] "SMAD4_neg_5bp_10bp_2"
## [1] "SP1_neg_5bp_10bp_1"
## [1] "RBPJ_5bp_21bp_3"
## [1] "IRF3_10bp_10bp_2"
## [1] "SP1_neg_10bp_21bp_2"
## [1] "KLF4_neg_10bp_10bp_1"
## [1] "ESRRB_neg_5bp_21bp_1"
## [1] "ESRRB_10bp_21bp_3"
## [1] "KLF4_10bp_10bp_2"
## [1] "IRF3_10bp_10bp_1"
## [1] "SMAD4_neg_10bp_21bp_3"
## [1] "TCF3_neg_5bp_10bp_1"
## [1] "ELK1_neg_10bp_10bp_2"
## [1] "RANDOM2_10bp_21bp_3"
## [1] "ELK1_neg_5bp_10bp_3"
## [1] "CREB1_neg_5bp_10bp_1"
## [1] "SMAD4_5bp_21bp_1"
## [1] "TP53_neg_5bp_10bp_3"
## [1] "NFE2L2_5bp_10bp_1"
## [1] "IRF3_5bp_10bp_2"
## [1] "RARA_neg_10bp_10bp_3"
## [1] "SMAD4_neg_10bp_10bp_2"
## [1] "CREB1_neg_10bp_10bp_3"
## [1] "SP1_neg_5bp_21bp_3"
## [1] "SMAD4_neg_5bp_21bp_1"
## [1] "NEUROG2_neg_5bp_21bp_2"
## [1] "STAT3_neg_5bp_21bp_1"
## [1] "RBPJ_neg_10bp_10bp_3"
## [1] "ESRRB_neg_5bp_21bp_3"
## [1] "GLI1_10bp_21bp_2"
## [1] "PAX6_5bp_21bp_3"
## [1] "PAX6_neg_10bp_21bp_3"
## [1] "ZFP42_5bp_21bp_1"
## [1] "RANDOM3_10bp_10bp_3"
## [1] "IRX3_5bp_21bp_1"
## [1] "NFYA_neg_10bp_10bp_1"
## [1] "PAX6_neg_10bp_21bp_2"
## [1] "NFKB1_10bp_21bp_2"
## [1] "TFCP2L1_neg_10bp_21bp_3"
## [1] "PAX6_10bp_10bp_2"
## [1] "ZFX_5bp_10bp_1"
## [1] "RANDOM1_5bp_21bp_3"
## [1] "TCF3_neg_5bp_10bp_2"
## [1] "ESRRB_10bp_10bp_1"
## [1] "RBPJ_10bp_10bp_3"
## [1] "SP1_neg_10bp_21bp_3"
## [1] "ZFX_10bp_10bp_3"
## [1] "IRF3_neg_10bp_10bp_3"
## [1] "GBX2_5bp_10bp_3"
## [1] "HOMEZ_10bp_10bp_3"
## [1] "NFKB1_10bp_10bp_1"
## [1] "PAX6_10bp_10bp_1"
## [1] "STAT3_5bp_21bp_1"
## [1] "RANDOM3_10bp_21bp_2"
## [1] "TP53_5bp_21bp_1"
## [1] "RARA_neg_5bp_21bp_2"
## [1] "NFE2L2_neg_5bp_10bp_3"
## [1] "RBPJ_neg_5bp_21bp_2"
## [1] "IRX3_neg_10bp_21bp_2"
## [1] "STAT3_5bp_21bp_2"
## [1] "ZFP42_neg_10bp_21bp_2"
## [1] "GLI1_10bp_10bp_1"
## [1] "RARA_5bp_21bp_2"
## [1] "NR3C1_neg_5bp_10bp_3"
## [1] "RBPJ_5bp_21bp_2"
## [1] "NR3C1_5bp_10bp_1"
## [1] "NFYA_10bp_10bp_2"
## [1] "ESRRB_5bp_21bp_2"
## [1] "GLI1_5bp_10bp_1"
## [1] "NFKB1_neg_10bp_21bp_3"
## [1] "NEUROG2_10bp_10bp_1"
## [1] "TCF3_neg_10bp_10bp_2"
## [1] "RANDOM3_5bp_21bp_1"
## [1] "ZFP42_5bp_10bp_3"
## [1] "TP53_10bp_21bp_3"
## [1] "RANDOM1_10bp_21bp_2"
## [1] "NFKB1_neg_5bp_21bp_2"
## [1] "KLF4_5bp_21bp_3"
## [1] "RARA_neg_10bp_10bp_1"
## [1] "GLI1_5bp_21bp_1"
## [1] "NFYA_neg_10bp_21bp_2"
## [1] "GLI1_neg_10bp_21bp_2"
## [1] "RANDOM3_10bp_10bp_1"
## [1] "GLI1_neg_5bp_21bp_3"
## [1] "GBX2_5bp_10bp_2"
## [1] "NFE2L2_neg_5bp_21bp_2"
## [1] "NFKB1_10bp_10bp_2"
## [1] "SMAD4_10bp_21bp_2"
## [1] "OTX1_5bp_10bp_2"
## [1] "OTX1_5bp_21bp_2"
## [1] "IRX3_5bp_21bp_3"
## [1] "OTX1_5bp_10bp_1"
## [1] "NFE2L2_neg_10bp_10bp_2"
## [1] "IRX3_5bp_10bp_3"
## [1] "RANDOM1_5bp_21bp_2"
## [1] "TP53_10bp_10bp_2"
## [1] "RBPJ_neg_10bp_10bp_1"
## [1] "TFCP2L1_5bp_10bp_1"
## [1] "SP1_5bp_10bp_1"
## [1] "RARA_10bp_21bp_1"
## [1] "ZFP42_neg_5bp_10bp_1"
## [1] "ZFX_5bp_10bp_3"
## [1] "TCF3_10bp_10bp_2"
## [1] "HOMEZ_10bp_21bp_3"
## [1] "OTX1_5bp_10bp_3"
## [1] "TFCP2L1_10bp_10bp_3"
## [1] "TFCP2L1_neg_10bp_10bp_3"
## [1] "IRF3_neg_5bp_21bp_2"
## [1] "SP1_10bp_21bp_3"
## [1] "ESRRB_5bp_10bp_3"
## [1] "HOMEZ_10bp_21bp_1"
## [1] "TFCP2L1_neg_10bp_10bp_1"
## [1] "TP53_neg_10bp_21bp_3"
## [1] "TCF3_10bp_21bp_2"
## [1] "TCF3_10bp_21bp_3"
## [1] "CREB1_neg_5bp_21bp_3"
## [1] "STAT3_neg_10bp_10bp_1"
## [1] "IRF3_neg_5bp_10bp_2"
## [1] "IRF3_5bp_10bp_3"
## [1] "RARA_5bp_21bp_1"
## [1] "RARA_10bp_21bp_2"
## [1] "IRX3_5bp_10bp_1"
## [1] "NFYA_10bp_10bp_3"
## [1] "ESRRB_neg_10bp_21bp_2"
## [1] "RBPJ_10bp_10bp_1"
## [1] "CREB1_10bp_10bp_2"
## [1] "STAT3_neg_5bp_10bp_3"
## [1] "NFKB1_neg_10bp_10bp_3"
## [1] "HOMEZ_5bp_21bp_1"
## [1] "HOMEZ_10bp_10bp_2"
## [1] "TP53_neg_5bp_21bp_3"
## [1] "GLI1_neg_10bp_21bp_3"
## [1] "IRX3_neg_5bp_10bp_2"
## [1] "GLI1_neg_5bp_10bp_3"
## [1] "ESRRB_neg_10bp_10bp_2"
## [1] "IRX3_10bp_21bp_2"
## [1] "ZFX_neg_5bp_21bp_1"
## [1] "OTX1_neg_5bp_21bp_3"
## [1] "NFE2L2_5bp_10bp_3"
## [1] "ZFX_neg_5bp_10bp_1"
## [1] "SP1_10bp_10bp_2"
## [1] "ELK1_neg_10bp_10bp_1"
## [1] "HOMEZ_neg_10bp_21bp_1"
## [1] "NEUROG2_neg_5bp_10bp_1"
## [1] "RANDOM2_5bp_10bp_2"
## [1] "CREB1_neg_5bp_21bp_2"
## [1] "RARA_10bp_10bp_3"
## [1] "NR3C1_neg_5bp_10bp_1"
## [1] "HOMEZ_neg_10bp_10bp_2"
## [1] "RARA_10bp_10bp_1"
## [1] "ELK1_neg_10bp_10bp_3"
## [1] "NEUROG2_5bp_10bp_3"
## [1] "ELK1_10bp_21bp_3"
## [1] "HOMEZ_10bp_21bp_2"
## [1] "IRX3_5bp_10bp_2"
## [1] "NFYA_5bp_21bp_2"
## [1] "IRX3_neg_5bp_21bp_1"
## [1] "CREB1_neg_10bp_21bp_2"
## [1] "CREB1_neg_10bp_10bp_1"
## [1] "IRX3_neg_5bp_21bp_3"
## [1] "PAX6_neg_5bp_10bp_1"
## [1] "TCF3_5bp_10bp_1"
## [1] "HOMEZ_5bp_10bp_1"
## [1] "TCF3_neg_5bp_21bp_2"
## [1] "NR3C1_5bp_21bp_2"
## [1] "OTX1_neg_10bp_10bp_3"
## [1] "NR3C1_neg_10bp_21bp_3"
## [1] "NFYA_neg_5bp_21bp_1"
## [1] "SMAD4_10bp_21bp_3"
## [1] "GLI1_5bp_10bp_3"
## [1] "RANDOM2_5bp_21bp_1"
## [1] "HOMEZ_neg_5bp_21bp_1"
## [1] "TCF3_5bp_10bp_2"
## [1] "RANDOM2_10bp_10bp_3"
## [1] "SMAD4_10bp_10bp_1"
## [1] "SMAD4_5bp_10bp_1"
## [1] "ZFX_neg_10bp_21bp_3"
## [1] "NEUROG2_neg_10bp_21bp_1"
## [1] "PAX6_neg_10bp_10bp_2"
## [1] "RARA_neg_5bp_21bp_3"
## [1] "GBX2_5bp_21bp_1"
## [1] "NEUROG2_neg_5bp_10bp_3"
## [1] "ZFP42_10bp_21bp_2"
## [1] "RARA_neg_5bp_10bp_1"
## [1] "IRF3_neg_10bp_21bp_2"
## [1] "IRX3_5bp_21bp_2"
## [1] "IRF3_neg_10bp_10bp_2"
## [1] "TP53_neg_5bp_10bp_2"
## [1] "NR3C1_10bp_10bp_1"
## [1] "NFYA_neg_5bp_10bp_2"
## [1] "GBX2_10bp_10bp_1"
## [1] "NR3C1_10bp_21bp_1"
## [1] "RBPJ_neg_5bp_21bp_1"
## [1] "NR3C1_10bp_21bp_3"
## [1] "NFYA_neg_5bp_10bp_1"
## [1] "ZFX_neg_10bp_21bp_2"
## [1] "RANDOM2_10bp_10bp_2"
## [1] "NR3C1_neg_10bp_10bp_1"
## [1] "GBX2_neg_10bp_10bp_1"
## [1] "SP1_neg_10bp_10bp_1"
## [1] "HOMEZ_neg_5bp_10bp_2"
## [1] "SMAD4_neg_5bp_10bp_3"
## [1] "PAX6_neg_10bp_10bp_1"
## [1] "TCF3_5bp_21bp_3"
## [1] "HOMEZ_neg_10bp_10bp_1"
## [1] "IRF3_5bp_21bp_2"
## [1] "TCF3_5bp_21bp_2"
## [1] "NEUROG2_10bp_21bp_2"
## [1] "TP53_neg_5bp_21bp_2"
## [1] "OTX1_5bp_21bp_1"
## [1] "IRF3_neg_10bp_10bp_1"
## [1] "IRF3_neg_5bp_21bp_3"
## [1] "NEUROG2_neg_10bp_21bp_2"
## [1] "HOMEZ_neg_5bp_10bp_3"
## [1] "NR3C1_neg_5bp_21bp_3"
## [1] "NR3C1_neg_10bp_10bp_3"
## [1] "NR3C1_10bp_21bp_2"
## [1] "IRX3_neg_5bp_10bp_1"
## [1] "IRX3_neg_5bp_21bp_2"
## [1] "ZFX_neg_5bp_21bp_2"
## [1] "NEUROG2_5bp_21bp_1"
## [1] "HOMEZ_neg_5bp_21bp_2"
## [1] "SMAD4_neg_10bp_10bp_1"
## [1] "NR3C1_neg_10bp_10bp_2"
## [1] "HOMEZ_neg_5bp_21bp_3"
## [1] "RANDOM2_5bp_21bp_2"
## [1] "NEUROG2_neg_10bp_10bp_1"
## [1] "SMAD4_5bp_21bp_2"
## [1] "NR3C1_neg_10bp_21bp_2"
## [1] "SMAD4_5bp_10bp_2"
## [1] "NR3C1_neg_5bp_10bp_2"
## [1] "HOMEZ_neg_10bp_21bp_2"
## [1] "NEUROG2_10bp_10bp_3"
## [1] "HOMEZ_5bp_21bp_2"
## [1] "HOMEZ_neg_10bp_10bp_3"
## [1] "NEUROG2_neg_5bp_10bp_2"
## [1] "NRF1_neg_10bp_21bp_1"
## [1] "STAT1::STAT2_neg_10bp_21bp_1"
## [1] "WT1_neg_10bp_21bp_1"
## [1] "TFAP2A_10bp_21bp_1"
## [1] "ESR1_neg_10bp_21bp_1"
## [1] "POU5F1::SOX2_neg_10bp_21bp_1"
## [1] "NFATc1_neg_10bp_21bp_1"
## [1] "NFIA_10bp_21bp_1"
## [1] "HNF4A_neg_10bp_21bp_1"
## [1] "CEBPB_neg_10bp_21bp_1"
## [1] "STAT1::STAT2_10bp_21bp_1"
## [1] "POU5F1::SOX2_10bp_21bp_1"
## [1] "PGR_10bp_21bp_1"
## [1] "RUNX2_neg_10bp_21bp_1"
## [1] "NR1I3_10bp_21bp_1"
## [1] "ONECUT1_10bp_21bp_1"
## [1] "EGR1_10bp_21bp_1"
## [1] "HSF1_neg_10bp_21bp_1"
## [1] "EGR1_neg_10bp_21bp_1"
## [1] "NR1I3_neg_10bp_21bp_1"
## [1] "NR1I2_neg_10bp_21bp_1"
## [1] "NR5A2_10bp_21bp_1"
## [1] "PGR_neg_10bp_21bp_1"
## [1] "AHR::ARNT_neg_10bp_21bp_1"
## [1] "ONECUT1_neg_10bp_21bp_1"
## [1] "NR4A1_10bp_21bp_1"
## [1] "MEF2A_10bp_21bp_1"
## [1] "NR4A2::RXRA_10bp_21bp_1"
## [1] "FOXA1_neg_10bp_21bp_1"
## [1] "ESR1_10bp_21bp_1"
## [1] "HNF1A_neg_10bp_21bp_1"
## [1] "CEBPB_10bp_21bp_1"
## [1] "PPARA::RXRA_10bp_21bp_1"
## [1] "TEAD1_10bp_21bp_1"
## [1] "NR4A2::RXRA_neg_10bp_21bp_1"
## [1] "SRF_neg_10bp_21bp_1"
## [1] "MAF::NFE2_neg_10bp_21bp_1"
## [1] "NR1H4::RXRA_10bp_21bp_1"
## [1] "HNF1A_10bp_21bp_1"
## [1] "AR_neg_10bp_21bp_1"
## [1] "RORA_10bp_21bp_1"
## [1] "TCF7_10bp_21bp_1"
## [1] "NR5A2_neg_10bp_21bp_1"
## [1] "NR1I2_10bp_21bp_1"
## [1] "FOXA1_10bp_21bp_1"
## [1] "FOSL1_10bp_21bp_1"
## [1] "VDR::RXRA_10bp_21bp_1"
## [1] "TEAD1_neg_10bp_21bp_1"
## [1] "POU2F1_neg_10bp_21bp_1"
## [1] "SRF_10bp_21bp_1"
## [1] "FOXO1_neg_10bp_21bp_1"
## [1] "MAFA_neg_10bp_21bp_1"
## [1] "GRHL1_10bp_21bp_1"
## [1] "NRF1_10bp_21bp_1"
## [1] "AR_10bp_21bp_1"
## [1] "PPARA::RXRA_neg_10bp_21bp_1"
## [1] "MAF::NFE2_10bp_21bp_1"
## [1] "GATA1_neg_10bp_21bp_1"
## [1] "WT1_10bp_21bp_1"
## [1] "NR4A1_neg_10bp_21bp_1"
## [1] "NFATc1_10bp_21bp_1"
## [1] "REL_10bp_21bp_1"
## [1] "THRA_neg_10bp_21bp_1"
## [1] "NFIA_neg_10bp_21bp_1"
## [1] "POU5F1_neg_10bp_21bp_1"
## [1] "RXRA_neg_10bp_21bp_1"
## [1] "XBP1_neg_10bp_21bp_1"
## [1] "GATA4_10bp_21bp_1"
## [1] "FOSL1_neg_10bp_21bp_1"
## [1] "RUNX2_10bp_21bp_1"
## [1] "MYBL2_neg_10bp_21bp_1"
## [1] "RXRA_10bp_21bp_1"
## [1] "T_neg_10bp_21bp_1"
## [1] "FOS::JUN_10bp_21bp_1"
## [1] "MEF2A_neg_10bp_21bp_1"
## [1] "SOX9_10bp_21bp_1"
## [1] "FOS::JUN_neg_10bp_21bp_1"
## [1] "MYBL2_10bp_21bp_1"
## [1] "SOX9_neg_10bp_21bp_1"
## [1] "ETS1_10bp_21bp_1"
## [1] "SMAD2::SMAD3::SMAD4_10bp_21bp_1"
## [1] "ETS1_neg_10bp_21bp_1"
## [1] "NR1H2_10bp_21bp_1"
## [1] "REL_neg_10bp_21bp_1"
## [1] "TFAP2A_neg_10bp_21bp_1"
## [1] "THRA_10bp_21bp_1"
## [1] "AHR::ARNT_10bp_21bp_1"
## [1] "VDR::RXRA_neg_10bp_21bp_1"
## [1] "NR3C2_neg_10bp_21bp_1"
## [1] "XBP1_10bp_21bp_1"
## [1] "TCF7_neg_10bp_21bp_1"
## [1] "NR1D1_neg_10bp_21bp_1"
## [1] "E2F1_neg_10bp_21bp_1"
## [1] "MTF1_10bp_21bp_1"
## [1] "GATA1_10bp_21bp_1"
## [1] "NFAT5_10bp_21bp_1"
## [1] "SOX2_neg_10bp_21bp_1"
## [1] "RARA:RXRA_10bp_21bp_1"
## [1] "HNF4A_10bp_21bp_1"
## [1] "NR1H2_neg_10bp_21bp_1"
## [1] "POU2F1_10bp_21bp_1"
## [1] "NR1H4::RXRA_neg_10bp_21bp_1"
## [1] "THRB_10bp_21bp_1"
## [1] "PPARG::RXRA_neg_10bp_21bp_1"
## [1] "NR2E3_neg_10bp_21bp_1"
## [1] "PPARG::RXRA_10bp_21bp_1"
## [1] "NR3C2_10bp_21bp_1"
## [1] "SMAD2::SMAD3::SMAD4_neg_10bp_21bp_1"
## [1] "E2F1_10bp_21bp_1"
## [1] "NR4A1_neg_5bp_10bp_2"
## [1] "STAT1::STAT2_5bp_21bp_2"
## [1] "NR5A2_neg_10bp_21bp_2"
## [1] "XBP1_neg_10bp_10bp_2"
## [1] "POU5F1_10bp_10bp_2"
## [1] "NFATc1_neg_5bp_21bp_2"
## [1] "TFEB_TF-seq_NA_21bp_mCMV_NA"
## [1] "GATA3_TF-seq_NA_21bp_mCMV_NA"
## [1] "RARA:RXRA_neg_5bp_21bp_2"
## [1] "PPARA::RXRA_5bp_21bp_3"
## [1] "POU5F1::SOX2_10bp_10bp_1"
## [1] "NR1D1_neg_10bp_21bp_3"
## [1] "TFAP2A_neg_5bp_21bp_2"
## [1] "GATA1_neg_10bp_21bp_3"
## [1] "MEF2A_neg_10bp_10bp_3"
## [1] "MYBL2_5bp_10bp_2"
## [1] "NR4A2::RXRA_neg_5bp_10bp_3"
## [1] "PPARA::RXRA_neg_5bp_10bp_1"
## [1] "ESR1_neg_5bp_21bp_1"
## [1] "NFATc1_5bp_10bp_2"
## [1] "E2F1_10bp_10bp_1"
## [1] "NR1I3_5bp_21bp_1"
## [1] "RARA:RXRA_5bp_21bp_3"
## [1] "POU2F1_neg_5bp_21bp_1"
## [1] "RARA:RXRA_neg_10bp_21bp_1"
## [1] "NR1H4::RXRA_5bp_10bp_3"
## [1] "E2F1_neg_5bp_21bp_2"
## [1] "NR1I2_neg_10bp_21bp_3"
## [1] "NFAT5_promega_long_NA_10bp_mCMV_NA"
## [1] "XBP1_neg_10bp_21bp_3"
## [1] "FOSL1_5bp_10bp_2"
## [1] "SRF_neg_5bp_21bp_1"
## [1] "NR1H4::RXRA_neg_5bp_10bp_3"
## [1] "NR1D1_5bp_21bp_1"
## [1] "AR_5bp_21bp_1"
## [1] "TCF7_5bp_21bp_2"
## [1] "TFAP2A_neg_5bp_10bp_1"
## [1] "THRB_5bp_10bp_2"
## [1] "FOXO1_5bp_10bp_1"
## [1] "NR4A2::RXRA_neg_10bp_21bp_2"
## [1] "NR1D1_neg_10bp_10bp_2"
## [1] "SRE_promega_NA_10bp_mCMV_NA"
## [1] "HNF1A_neg_10bp_10bp_2"
## [1] "THRA_neg_5bp_21bp_2"
## [1] "STAT1::STAT2_10bp_21bp_3"
## [1] "IRF3_romanov_NA_21bp_mCMV_NA"
## [1] "FOXA1_neg_10bp_10bp_3"
## [1] "FOXO1_neg_5bp_10bp_2"
## [1] "ONECUT1_neg_5bp_10bp_3"
## [1] "GATA1_5bp_10bp_2"
## [1] "MYBL2_romanov_NA_21bp_mCMV_NA"
## [1] "POU5F1::SOX2_neg_5bp_10bp_1"
## [1] "NR1D1_neg_10bp_10bp_3"
## [1] "MYBL2_10bp_21bp_3"
## [1] "E2F1_neg_10bp_10bp_2"
## [1] "FOXA1_neg_5bp_21bp_3"
## [1] "NFIA_romanov_NA_21bp_mCMV_NA"
## [1] "RUNX2_neg_5bp_21bp_2"
## [1] "ONECUT1_neg_10bp_10bp_2"
## [1] "TEAD1_neg_10bp_10bp_3"
## [1] "SOX9_neg_10bp_10bp_2"
## [1] "GATA4_5bp_21bp_3"
## [1] "RXRA_neg_10bp_10bp_2"
## [1] "NFAT5_5bp_21bp_3"
## [1] "RXRA_neg_10bp_21bp_2"
## [1] "WT1_neg_5bp_21bp_3"
## [1] "TFAP2A_5bp_10bp_2"
## [1] "MAF::NFE2_10bp_10bp_2"
## [1] "MAF::NFE2_10bp_21bp_3"
## [1] "PPARA::RXRA_5bp_21bp_2"
## [1] "NR1I3_neg_5bp_21bp_2"
## [1] "GATA4_10bp_21bp_2"
## [1] "PPARG::RXRA_2_TF-seq_NA_10bp_mCMV_NA"
## [1] "VDR::RXRA_neg_10bp_21bp_2"
## [1] "VDR::RXRA_5bp_21bp_3"
## [1] "POU5F1::SOX2_neg_5bp_10bp_3"
## [1] "THRA_neg_10bp_21bp_2"
## [1] "RXRA_10bp_21bp_2"
## [1] "AHR::ARNT_5bp_21bp_3"
## [1] "VDR::RXRA_neg_5bp_10bp_3"
## [1] "RARA:RXRA_neg_5bp_10bp_1"
## [1] "THRB_neg_10bp_21bp_3"
## [1] "NR1H4::RXRA_5bp_10bp_1"
## [1] "POU5F1_neg_10bp_10bp_3"
## [1] "TFAP2A_neg_10bp_10bp_1"
## [1] "EGR1_5bp_10bp_2"
## [1] "NR4A2::RXRA_10bp_10bp_2"
## [1] "SOX9_neg_10bp_10bp_3"
## [1] "STAT1::STAT2_neg_5bp_10bp_3"
## [1] "MTF1_neg_5bp_10bp_2"
## [1] "FOXO1_5bp_10bp_3"
## [1] "ESR1_10bp_10bp_1"
## [1] "FOXA1_5bp_21bp_2"
## [1] "SRF_5bp_21bp_2"
## [1] "NR1I3_neg_5bp_21bp_3"
## [1] "HNF1A_neg_5bp_10bp_1"
## [1] "POU2F1_neg_5bp_10bp_1"
## [1] "HNF4A_neg_5bp_21bp_1"
## [1] "GRHL1_10bp_10bp_3"
## [1] "FOXA1_10bp_10bp_1"
## [1] "FOS::JUN_neg_10bp_10bp_3"
## [1] "POU2F1_neg_10bp_10bp_1"
## [1] "VDR::RXRA_10bp_10bp_2"
## [1] "NFAT5_5bp_10bp_1"
## [1] "FOS::JUN_10bp_21bp_3"
## [1] "GATA4_5bp_10bp_2"
## [1] "SOX2_romanov_NA_21bp_mCMV_NA"
## [1] "CEBPB_TF-seq_NA_21bp_mCMV_NA"
## [1] "STAT1::STAT2_neg_5bp_21bp_2"
## [1] "STAT1_promega_long_NA_10bp_mCMV_NA"
## [1] "XBP1_neg_5bp_10bp_2"
## [1] "NR1D1_neg_5bp_21bp_3"
## [1] "NR4A2::RXRA_5bp_21bp_3"
## [1] "PPARG::RXRA_neg_5bp_21bp_3"
## [1] "POU5F1::SOX2_10bp_10bp_2"
## [1] "NR1H4::RXRA_neg_5bp_21bp_3"
## [1] "STAT1_TF-seq_NA_21bp_mCMV_NA"
## [1] "CREB1_promega_NA_21bp_mCMV_NA"
## [1] "CREB1_promega_long_NA_10bp_mCMV_NA"
## [1] "NFATc1_5bp_21bp_3"
## [1] "NR4A1_10bp_21bp_3"
## [1] "GATA1_5bp_21bp_2"
## [1] "THRA_10bp_10bp_1"
## [1] "VDR::RXRA_TF-seq_NA_10bp_mCMV_NA"
## [1] "NR1I2_neg_5bp_21bp_2"
## [1] "AHR::ARNT_neg_5bp_21bp_3"
## [1] "EGR1_10bp_10bp_1"
## [1] "PGR_10bp_21bp_3"
## [1] "NFAT5_5bp_10bp_3"
## [1] "NR1H4::RXRA_neg_10bp_10bp_1"
## [1] "STAT3_promega_long_NA_10bp_mCMV_NA"
## [1] "FOSL1_neg_5bp_10bp_3"
## [1] "AHR::ARNT_neg_10bp_10bp_3"
## [1] "WT1_5bp_10bp_1"
## [1] "ETS1_neg_10bp_10bp_1"
## [1] "POU5F1_10bp_21bp_1"
## [1] "MYBL2_10bp_10bp_1"
## [1] "SRF_promega_NA_10bp_mCMV_NA"
## [1] "ESR1_10bp_21bp_2"
## [1] "NRF1_5bp_10bp_3"
## [1] "RORA_neg_5bp_21bp_2"
## [1] "NFIA_romanov_NA_10bp_mCMV_NA"
## [1] "SMAD2::SMAD3::SMAD4_romanov_NA_21bp_mCMV_NA"
## [1] "POU5F1_5bp_10bp_3"
## [1] "THRB_5bp_10bp_1"
## [1] "REL_10bp_21bp_2"
## [1] "POU5F1::SOX2_5bp_21bp_1"
## [1] "STAT1::STAT2_neg_5bp_21bp_1"
## [1] "EGR1_10bp_21bp_2"
## [1] "WT1_10bp_21bp_3"
## [1] "POU5F1_5bp_21bp_3"
## [1] "MAFA_neg_5bp_10bp_1"
## [1] "FOS::JUN_TF-seq_NA_21bp_mCMV_NA"
## [1] "TCF7_10bp_10bp_2"
## [1] "ONECUT1_romanov_NA_10bp_mCMV_NA"
## [1] "NR1H2_neg_5bp_10bp_3"
## [1] "CEBPA_TF-seq_NA_21bp_mCMV_NA"
## [1] "NR1D1_neg_5bp_10bp_3"
## [1] "RXRA_neg_10bp_21bp_3"
## [1] "TCF7_neg_5bp_21bp_2"
## [1] "FOXO1_neg_10bp_10bp_2"
## [1] "STAT1::STAT2_5bp_10bp_3"
## [1] "ATF4_TF-seq_NA_10bp_mCMV_NA"
## [1] "NR4A2::RXRA_10bp_10bp_3"
## [1] "SMAD2::SMAD3::SMAD4_neg_10bp_10bp_1"
## [1] "NR1H4::RXRA_5bp_21bp_3"
## [1] "PGR_neg_10bp_10bp_1"
## [1] "T_neg_10bp_21bp_2"
## [1] "PPARG::RXRA_neg_5bp_21bp_2"
## [1] "HNF1A_neg_10bp_10bp_1"
## [1] "NR1I3_10bp_10bp_2"
## [1] "NFAT5_5bp_21bp_2"
## [1] "ONECUT1_5bp_10bp_2"
## [1] "RARA:RXRA_neg_10bp_10bp_2"
## [1] "MTF1_5bp_10bp_3"
## [1] "NFIA_5bp_10bp_1"
## [1] "NRF1_neg_10bp_10bp_1"
## [1] "EGR1_neg_10bp_21bp_3"
## [1] "NR1H4::RXRA_neg_5bp_10bp_1"
## [1] "NR2E3_neg_10bp_10bp_1"
## [1] "AHR::ARNT_10bp_10bp_1"
## [1] "VDR::RXRA_neg_5bp_21bp_1"
## [1] "MAF::NFE2_neg_10bp_10bp_2"
## [1] "SRF_5bp_10bp_3"
## [1] "TEAD1_neg_10bp_21bp_2"
## [1] "RFX1_neg_5bp_21bp_1"
## [1] "NR1D1_neg_5bp_21bp_2"
## [1] "THRA_5bp_21bp_2"
## [1] "NFATc1_neg_5bp_10bp_1"
## [1] "PGR_neg_5bp_10bp_2"
## [1] "FOSL1_neg_10bp_10bp_2"
## [1] "PGR_neg_5bp_21bp_1"
## [1] "WT1_10bp_10bp_1"
## [1] "NR1I3_10bp_10bp_1"
## [1] "GATA4_5bp_21bp_1"
## [1] "FOSL1_neg_10bp_10bp_3"
## [1] "MAFA_neg_10bp_21bp_2"
## [1] "E2F1_neg_5bp_10bp_1"
## [1] "PPARA::RXRA_neg_10bp_10bp_3"
## [1] "NR4A1_5bp_21bp_2"
## [1] "STAT5_TF-seq_NA_10bp_mCMV_NA"
## [1] "TP53_promega_NA_10bp_mCMV_NA"
## [1] "RXRA_10bp_10bp_2"
## [1] "RUNX2_5bp_10bp_1"
## [1] "ONECUT1_5bp_21bp_2"
## [1] "NR1I3_neg_10bp_10bp_3"
## [1] "STAT3_promega_NA_10bp_mCMV_NA"
## [1] "ETS1_neg_5bp_10bp_3"
## [1] "FOSL1_5bp_21bp_2"
## [1] "NR1H2_neg_10bp_10bp_2"
## [1] "MEF2A_neg_10bp_10bp_1"
## [1] "SOX9_5bp_21bp_3"
## [1] "VDR::RXRA_5bp_21bp_2"
## [1] "TFAP2A_neg_10bp_10bp_3"
## [1] "NRF1_neg_10bp_21bp_3"
## [1] "XBP1_10bp_21bp_3"
## [1] "VDR::RXRA_10bp_10bp_3"
## [1] "HNF4A_neg_10bp_21bp_3"
## [1] "SOX9_neg_5bp_21bp_1"
## [1] "RUNX2_neg_10bp_10bp_2"
## [1] "RORA_5bp_21bp_1"
## [1] "RXRA_neg_5bp_21bp_2"
## [1] "XBP1_neg_10bp_10bp_3"
## [1] "SMAD2::SMAD3::SMAD4_10bp_10bp_2"
## [1] "IRF1_TF-seq_NA_10bp_mCMV_NA"
## [1] "TCF7_TF-seq_NA_10bp_mCMV_NA"
## [1] "TCF7_neg_5bp_10bp_3"
## [1] "POU2F1_5bp_10bp_2"
## [1] "T_neg_10bp_10bp_2"
## [1] "FOS::JUN_neg_5bp_10bp_3"
## [1] "NR3C2_neg_10bp_21bp_2"
## [1] "HNF4A_neg_10bp_10bp_1"
## [1] "NFKB1_TF-seq_NA_10bp_mCMV_NA"
## [1] "RXRA_neg_5bp_10bp_1"
## [1] "NR3C2_neg_10bp_10bp_2"
## [1] "AR_neg_5bp_10bp_3"
## [1] "TCF7_neg_5bp_21bp_1"
## [1] "REL_10bp_21bp_3"
## [1] "POU5F1::SOX2_5bp_21bp_2"
## [1] "MYBL2_neg_10bp_10bp_1"
## [1] "PPARG::RXRA_neg_10bp_10bp_2"
## [1] "RXRA_neg_5bp_10bp_3"
## [1] "HNF1A_10bp_10bp_3"
## [1] "NR4A1_10bp_10bp_1"
## [1] "MTF1_5bp_21bp_1"
## [1] "SOX9_neg_5bp_10bp_1"
## [1] "TEAD1_10bp_10bp_3"
## [1] "E2F1_neg_10bp_21bp_2"
## [1] "MAF::NFE2_10bp_10bp_3"
## [1] "NR1H4::RXRA_TF-seq_NA_21bp_mCMV_NA"
## [1] "POU2F1_10bp_21bp_3"
## [1] "CEBPB_5bp_21bp_2"
## [1] "SRF_neg_10bp_10bp_3"
## [1] "TCF7_romanov_NA_10bp_mCMV_NA"
## [1] "NFATc1_neg_5bp_10bp_3"
## [1] "PPARA::RXRA_romanov_NA_10bp_mCMV_NA"
## [1] "POU5F1::SOX2_10bp_21bp_2"
## [1] "GATA1_romanov_NA_10bp_mCMV_NA"
## [1] "STAT1::STAT2_TF-seq_NA_10bp_mCMV_NA"
## [1] "NR1D1_10bp_21bp_1"
## [1] "PPARG::RXRA_10bp_21bp_3"
## [1] "PPARA::RXRA_neg_5bp_10bp_3"
## [1] "RARA:RXRA_5bp_21bp_1"
## [1] "NR4A2::RXRA_5bp_10bp_2"
## [1] "HSF1_romanov_NA_10bp_mCMV_NA"
## [1] "HSF1_5bp_21bp_3"
## [1] "PPARA::RXRA_neg_10bp_21bp_2"
## [1] "NR5A2_neg_10bp_10bp_1"
## [1] "THRB_10bp_10bp_1"
## [1] "MAFA_neg_5bp_10bp_3"
## [1] "NR1H4::RXRA_10bp_10bp_3"
## [1] "POU5F1::SOX2_5bp_10bp_2"
## [1] "FOXO1_10bp_10bp_3"
## [1] "TEAD1_TF-seq_NA_10bp_mCMV_NA"
## [1] "NFIA_5bp_21bp_1"
## [1] "EGR1_10bp_10bp_2"
## [1] "NR3C2_neg_5bp_10bp_3"
## [1] "FOXA1_10bp_21bp_3"
## [1] "TFAP2A_5bp_21bp_2"
## [1] "NR1I2_5bp_10bp_1"
## [1] "HNF4A_neg_5bp_10bp_2"
## [1] "POU2F1_neg_5bp_21bp_2"
## [1] "RUNX2_neg_5bp_21bp_3"
## [1] "ETS1_10bp_21bp_2"
## [1] "TEAD1_10bp_21bp_3"
## [1] "ESR1_neg_5bp_21bp_2"
## [1] "AHR::ARNT_neg_5bp_10bp_3"
## [1] "GATA1_neg_5bp_10bp_3"
## [1] "FOS::JUN_neg_10bp_10bp_2"
## [1] "MYBL2_10bp_10bp_3"
## [1] "FOSL1_neg_10bp_21bp_3"
## [1] "MTF1_10bp_10bp_3"
## [1] "IRF3_romanov_NA_10bp_mCMV_NA"
## [1] "NFATc1_5bp_21bp_2"
## [1] "FOXA1_5bp_21bp_1"
## [1] "MEF2A_neg_10bp_21bp_2"
## [1] "STAT6_TF-seq_NA_21bp_mCMV_NA"
## [1] "XBP1_5bp_21bp_2"
## [1] "RFX1_5bp_21bp_2"
## [1] "TCF7_neg_5bp_10bp_1"
## [1] "AR_5bp_10bp_2"
## [1] "FOSL1_neg_5bp_10bp_2"
## [1] "FOXA1_neg_5bp_10bp_1"
## [1] "REL_neg_5bp_10bp_2"
## [1] "T_neg_5bp_10bp_1"
## [1] "VDR::RXRA_5bp_10bp_3"
## [1] "GRHL1_10bp_10bp_1"
## [1] "MAFA_neg_10bp_10bp_3"
## [1] "POU2F1_5bp_21bp_2"
## [1] "NR1H4::RXRA_10bp_10bp_2"
## [1] "CEBPB_neg_10bp_21bp_2"
## [1] "HNF4A_5bp_10bp_2"
## [1] "HSF1_10bp_21bp_1"
## [1] "HNF1A_neg_10bp_10bp_3"
## [1] "E2F1_neg_10bp_10bp_1"
## [1] "NFATc1_5bp_10bp_3"
## [1] "PPARA::RXRA_neg_10bp_21bp_3"
## [1] "ONECUT1_10bp_10bp_3"
## [1] "AHR::ARNT_romanov_NA_10bp_mCMV_NA"
## [1] "SMAD2::SMAD3::SMAD4_5bp_21bp_3"
## [1] "AHR::ARNT_10bp_10bp_2"
## [1] "HSF1_10bp_10bp_1"
## [1] "ESR1_5bp_21bp_3"
## [1] "STAT4_TF-seq_NA_10bp_mCMV_NA"
## [1] "FOXA1_10bp_10bp_2"
## [1] "REL_5bp_21bp_1"
## [1] "STAT1::STAT2_5bp_21bp_1"
## [1] "HSF1_5bp_21bp_2"
## [1] "NR1I3_neg_5bp_10bp_3"
## [1] "TCF7_5bp_21bp_3"
## [1] "POU5F1::SOX2_neg_10bp_21bp_3"
## [1] "RARA:RXRA_10bp_10bp_2"
## [1] "NR1H2_5bp_21bp_1"
## [1] "E2F1_5bp_21bp_1"
## [1] "THRB_10bp_10bp_3"
## [1] "NR4A2::RXRA_5bp_10bp_1"
## [1] "WT1_5bp_21bp_2"
## [1] "AHR::ARNT_5bp_10bp_1"
## [1] "CEBPB_romanov_NA_10bp_mCMV_NA"
## [1] "REL_neg_10bp_21bp_2"
## [1] "MTF1_neg_5bp_21bp_2"
## [1] "FOS::JUN_10bp_21bp_2"
## [1] "NR1I2_10bp_10bp_1"
## [1] "RORA_neg_5bp_21bp_1"
## [1] "NFE2L2_promega_NA_10bp_mCMV_NA"
## [1] "MAFA_neg_5bp_21bp_1"
## [1] "GATA1_neg_5bp_21bp_2"
## [1] "POU5F1_neg_5bp_21bp_2"
## [1] "HSF1_neg_5bp_10bp_2"
## [1] "WT1_neg_10bp_21bp_3"
## [1] "NR1I2_5bp_21bp_1"
## [1] "XBP1_10bp_10bp_3"
## [1] "MYBL2_neg_5bp_21bp_1"
## [1] "NR3C1_romanov_NA_21bp_mCMV_NA"
## [1] "RORA_neg_10bp_10bp_1"
## [1] "NFKB1_TF-seq_NA_21bp_mCMV_NA"
## [1] "NR1I3_romanov_NA_21bp_mCMV_NA"
## [1] "ESR1_romanov_NA_10bp_mCMV_NA"
## [1] "HNF4A_10bp_21bp_2"
## [1] "NFATc1_10bp_10bp_2"
## [1] "WT1_10bp_10bp_3"
## [1] "PPARA::RXRA_neg_10bp_10bp_2"
## [1] "POU5F1::SOX2_neg_10bp_10bp_1"
## [1] "AR_neg_10bp_10bp_1"
## [1] "PGR_10bp_10bp_1"
## [1] "NR1I3_neg_10bp_10bp_1"
## [1] "SRF_neg_10bp_21bp_2"
## [1] "TCF7_neg_5bp_21bp_3"
## [1] "TEAD1_neg_10bp_10bp_2"
## [1] "MEF2A_neg_10bp_21bp_3"
## [1] "FOS::JUN_10bp_10bp_3"
## [1] "POU5F1_neg_10bp_21bp_3"
## [1] "FOXA1_neg_5bp_10bp_2"
## [1] "CEBPB_5bp_10bp_3"
## [1] "CLOCK_TF-seq_NA_10bp_mCMV_NA"
## [1] "STAT1::STAT2_neg_5bp_10bp_2"
## [1] "ELK1_TF-seq_NA_21bp_mCMV_NA"
## [1] "VDR::RXRA_neg_10bp_10bp_3"
## [1] "STAT3_romanov_NA_21bp_mCMV_NA"
## [1] "HNF4A_neg_5bp_21bp_2"
## [1] "TCF7_promega_long_NA_10bp_mCMV_NA"
## [1] "PPARG::RXRA_neg_5bp_10bp_3"
## [1] "SOX9_10bp_10bp_1"
## [1] "NRF1_neg_10bp_10bp_3"
## [1] "CEBPB_10bp_10bp_2"
## [1] "ETS1_neg_10bp_21bp_2"
## [1] "NR3C2_neg_10bp_21bp_3"
## [1] "ESR1_5bp_10bp_1"
## [1] "SOX2_10bp_21bp_3"
## [1] "NR1H2_TF-seq_NA_10bp_mCMV_NA"
## [1] "RORA_TF-seq_NA_21bp_mCMV_NA"
## [1] "FOS::JUN_5bp_10bp_2"
## [1] "RXRA_10bp_21bp_3"
## [1] "SMAD2::SMAD3::SMAD4_10bp_21bp_3"
## [1] "AR_neg_10bp_10bp_3"
## [1] "MAF::NFE2_5bp_10bp_1"
## [1] "RARA:RXRA_10bp_21bp_2"
## [1] "STAT5_TF-seq_NA_21bp_mCMV_NA"
## [1] "NFE2_romanov_NA_10bp_mCMV_NA"
## [1] "NR1H2_5bp_10bp_2"
## [1] "PPARA::RXRA_neg_10bp_10bp_1"
## [1] "EGR1_5bp_10bp_1"
## [1] "FOXO1_5bp_21bp_1"
## [1] "TFAP2A_5bp_21bp_3"
## [1] "HNF1A_10bp_10bp_1"
## [1] "CREB1_TF-seq_NA_21bp_mCMV_NA"
## [1] "HNF1A_neg_5bp_10bp_3"
## [1] "SRF_10bp_10bp_2"
## [1] "NR1I2_5bp_21bp_2"
## [1] "TFAP2A_neg_10bp_21bp_2"
## [1] "NR4A1_5bp_21bp_3"
## [1] "STAT1.49_TF-seq_NA_21bp_mCMV_NA"
## [1] "NR1H2_5bp_10bp_1"
## [1] "PPARG::PPARG_TF-seq_NA_21bp_mCMV_NA"
## [1] "NR1I2_5bp_10bp_2"
## [1] "GATA1_5bp_21bp_1"
## [1] "FOSL1_10bp_10bp_1"
## [1] "SMAD2::SMAD3::SMAD4_5bp_21bp_2"
## [1] "NFE2L2_romanov_NA_21bp_mCMV_NA"
## [1] "RUNX2_5bp_10bp_3"
## [1] "MTF1_neg_10bp_10bp_1"
## [1] "HNF1A_5bp_21bp_1"
## [1] "NR4A1_neg_5bp_21bp_1"
## [1] "NR1I3_neg_5bp_10bp_1"
## [1] "PPARG::RXRA_10bp_10bp_3"
## [1] "NR1D1_neg_10bp_10bp_1"
## [1] "FOXA1_neg_10bp_10bp_1"
## [1] "NR1I3_5bp_10bp_1"
## [1] "SOX2_neg_10bp_10bp_3"
## [1] "WT1_neg_5bp_21bp_1"
## [1] "STAT1::STAT2_5bp_10bp_1"
## [1] "TEAD1_neg_5bp_21bp_3"
## [1] "E2F1_5bp_21bp_2"
## [1] "MYBL2_5bp_21bp_1"
## [1] "ESR1_5bp_10bp_2"
## [1] "SRF_TF-seq_NA_10bp_mCMV_NA"
## [1] "AR_10bp_10bp_1"
## [1] "HNF1A_5bp_21bp_2"
## [1] "NR4A1_5bp_10bp_2"
## [1] "WT1_neg_5bp_10bp_2"
## [1] "FOXO1_10bp_21bp_2"
## [1] "THRB_neg_5bp_21bp_2"
## [1] "RFX1_5bp_10bp_1"
## [1] "RXRA_5bp_21bp_2"
## [1] "STAT1::STAT2_neg_10bp_21bp_3"
## [1] "ONECUT1_10bp_10bp_2"
## [1] "GATA1_neg_10bp_21bp_2"
## [1] "RUNX2_10bp_10bp_2"
## [1] "NR4A2::RXRA_neg_5bp_21bp_1"
## [1] "REL_neg_10bp_21bp_3"
## [1] "E2F1_10bp_21bp_3"
## [1] "FOXO1_TF-seq_NA_10bp_mCMV_NA"
## [1] "PPARA::RXRA_neg_5bp_10bp_2"
## [1] "NR1H4::RXRA_neg_10bp_21bp_2"
## [1] "FOS::JUN_10bp_10bp_2"
## [1] "REL_neg_10bp_10bp_3"
## [1] "PAX6_romanov_NA_10bp_mCMV_NA"
## [1] "FOSL1_5bp_10bp_3"
## [1] "ESR1_neg_10bp_10bp_3"
## [1] "SOX9_neg_5bp_10bp_2"
## [1] "HNF1A_10bp_10bp_2"
## [1] "RXRA_neg_10bp_10bp_1"
## [1] "NFIA_neg_5bp_21bp_3"
## [1] "RARA:RXRA_10bp_21bp_3"
## [1] "NR1H2_10bp_10bp_2"
## [1] "MTF1_promega_NA_21bp_mCMV_NA"
## [1] "RORA_neg_10bp_21bp_2"
## [1] "NFAT5_10bp_21bp_2"
## [1] "ETS1_10bp_10bp_3"
## [1] "SRF_promega_long_NA_10bp_mCMV_NA"
## [1] "AR_10bp_10bp_2"
## [1] "STAT1::STAT2_neg_10bp_10bp_3"
## [1] "NFE2L2_romanov_NA_10bp_mCMV_NA"
## [1] "XBP1_10bp_10bp_1"
## [1] "MYBL2_neg_10bp_10bp_3"
## [1] "SREBF1_TF-seq_NA_10bp_mCMV_NA"
## [1] "MEF2A_5bp_21bp_1"
## [1] "NFAT5_5bp_21bp_1"
## [1] "NR1I3_5bp_10bp_3"
## [1] "ATF6_promega_NA_21bp_mCMV_NA"
## [1] "FOS::JUN_neg_10bp_21bp_2"
## [1] "ETS1_5bp_10bp_2"
## [1] "NR3C2_5bp_10bp_2"
## [1] "HNF1A_neg_5bp_21bp_2"
## [1] "NR4A2::RXRA_neg_10bp_10bp_1"
## [1] "SREBF1_TF-seq_NA_21bp_mCMV_NA"
## [1] "NR5A2_neg_5bp_10bp_2"
## [1] "VDR::RXRA_5bp_10bp_2"
## [1] "MEF2A_5bp_10bp_2"
## [1] "POU5F1::SOX2_neg_10bp_21bp_2"
## [1] "FOSL1_neg_5bp_21bp_2"
## [1] "TCF7_promega_NA_10bp_mCMV_NA"
## [1] "XBP1_neg_10bp_10bp_1"
## [1] "NFATc1_neg_10bp_21bp_3"
## [1] "HNF4A_neg_10bp_10bp_3"
## [1] "TFAP2A_5bp_21bp_1"
## [1] "AHR::ARNT_10bp_21bp_3"
## [1] "PPARG::RXRA_5bp_21bp_1"
## [1] "CREB1_TF-romanov_NA_10bp_mCMV_NA"
## [1] "ONECUT1_5bp_21bp_1"
## [1] "RORA_5bp_10bp_2"
## [1] "SRF_5bp_10bp_1"
## [1] "THRA_neg_5bp_21bp_1"
## [1] "NR1D1_5bp_21bp_2"
## [1] "NFKB1_romanov_NA_21bp_mCMV_NA"
## [1] "SOX2_5bp_10bp_2"
## [1] "SOX2_10bp_10bp_3"
## [1] "XBP1_neg_5bp_10bp_3"
## [1] "NR1I3_romanov_NA_10bp_mCMV_NA"
## [1] "FOXA1_neg_10bp_10bp_2"
## [1] "VDR::RXRA_neg_5bp_10bp_2"
## [1] "ESR1_romanov_NA_21bp_mCMV_NA"
## [1] "PPARA::RXRA_5bp_21bp_1"
## [1] "WT1_5bp_21bp_1"
## [1] "SREBP_romanov_NA_10bp_mCMV_NA"
## [1] "SRF_5bp_21bp_1"
## [1] "CEBPB_neg_10bp_21bp_3"
## [1] "TCF7_5bp_10bp_3"
## [1] "NFATc1_neg_10bp_10bp_2"
## [1] "GATA1_10bp_10bp_1"
## [1] "EGR1_neg_5bp_21bp_3"
## [1] "POU2F1_romanov_NA_10bp_mCMV_NA"
## [1] "SMAD2::SMAD3::SMAD4_5bp_10bp_3"
## [1] "SOX2_neg_5bp_10bp_3"
## [1] "RARA:RXRA_neg_5bp_10bp_3"
## [1] "ESR1_neg_5bp_21bp_3"
## [1] "NR1I2_neg_10bp_21bp_2"
## [1] "POU5F1_neg_10bp_10bp_2"
## [1] "RARA:RXRA_10bp_10bp_3"
## [1] "CEBPB_neg_10bp_10bp_3"
## [1] "ONECUT1_10bp_21bp_3"
## [1] "NR1H2_romanov_NA_10bp_mCMV_NA"
## [1] "MTF1_neg_10bp_21bp_3"
## [1] "RORA_5bp_10bp_3"
## [1] "SMAD2::SMAD3::SMAD4_neg_5bp_10bp_1"
## [1] "HNF4A_10bp_21bp_3"
## [1] "NR1I3_neg_10bp_21bp_2"
## [1] "STAT1::STAT2_promega_NA_10bp_mCMV_NA"
## [1] "RUNX2_5bp_21bp_3"
## [1] "TCF7_TF-seq_NA_21bp_mCMV_NA"
## [1] "NR1I2_10bp_21bp_2"
## [1] "FOS::JUN_neg_5bp_10bp_1"
## [1] "SOX9_5bp_21bp_2"
## [1] "FOXA1_5bp_10bp_2"
## [1] "REL_neg_5bp_10bp_3"
## [1] "E2F1_romanov_NA_21bp_mCMV_NA"
## [1] "SREBP_romanov_NA_21bp_mCMV_NA"
## [1] "NR2E3_neg_5bp_10bp_2"
## [1] "SMAD2::SMAD3::SMAD4_romanov_NA_10bp_mCMV_NA"
## [1] "POU5F1::SOX2_5bp_10bp_1"
## [1] "PPARA::RXRA_neg_5bp_21bp_1"
## [1] "THRA_10bp_21bp_2"
## [1] "AR_neg_5bp_21bp_2"
## [1] "THRA_neg_10bp_10bp_3"
## [1] "GATA1_neg_5bp_10bp_1"
## [1] "TCF7_neg_10bp_10bp_1"
## [1] "STAT3_romanov_NA_10bp_mCMV_NA"
## [1] "FOSL1_10bp_10bp_3"
## [1] "WT1_neg_10bp_21bp_2"
## [1] "NR5A2_5bp_21bp_2"
## [1] "SMAD2::SMAD3::SMAD4_neg_5bp_21bp_1"
## [1] "POU5F1_neg_5bp_10bp_3"
## [1] "TCF7_10bp_10bp_1"
## [1] "XBP1_5bp_10bp_1"
## [1] "PGR_5bp_21bp_1"
## [1] "RUNX2_neg_5bp_10bp_1"
## [1] "POU5F1::SOX2_5bp_10bp_3"
## [1] "MAF::NFE2_5bp_10bp_2"
## [1] "RXRA_neg_5bp_10bp_2"
## [1] "MTF1_neg_10bp_10bp_3"
## [1] "FOSL1_10bp_21bp_2"
## [1] "STAT1.49_TF-seq_NA_10bp_mCMV_NA"
## [1] "FOSL1_neg_10bp_21bp_2"
## [1] "PPARG::RXRA_neg_5bp_21bp_1"
## [1] "MTF1_neg_10bp_10bp_2"
## [1] "NR1H4::RXRA_5bp_21bp_2"
## [1] "RXRA_5bp_10bp_2"
## [1] "GATA4_5bp_10bp_3"
## [1] "CEBPB_neg_5bp_21bp_1"
## [1] "NRF1_10bp_10bp_3"
## [1] "STAT3_TF-seq_NA_21bp_mCMV_NA"
## [1] "NR2E3_neg_5bp_21bp_3"
## [1] "PGR_10bp_21bp_2"
## [1] "RXRA_10bp_10bp_1"
## [1] "NFYA_TF-seq_NA_21bp_mCMV_NA"
## [1] "TFAP2A_neg_5bp_10bp_2"
## [1] "WT1_neg_10bp_10bp_1"
## [1] "STAT5_promega_NA_10bp_mCMV_NA"
## [1] "E2F1_10bp_10bp_2"
## [1] "PPARG::RXRA_neg_5bp_10bp_1"
## [1] "NR4A1_5bp_10bp_3"
## [1] "WT1_neg_5bp_21bp_2"
## [1] "NRF1_neg_10bp_10bp_2"
## [1] "NFIA_neg_5bp_10bp_1"
## [1] "CEBPB_5bp_10bp_2"
## [1] "POU2F1_10bp_10bp_2"
## [1] "MYBL2_neg_5bp_21bp_2"
## [1] "TFAP2A_10bp_10bp_2"
## [1] "SOX9_10bp_21bp_2"
## [1] "WT1_10bp_10bp_2"
## [1] "SRF_neg_5bp_10bp_2"
## [1] "MTF1_10bp_21bp_3"
## [1] "POU5F1_10bp_10bp_1"
## [1] "HNF4A_neg_10bp_10bp_2"
## [1] "RORA_10bp_10bp_3"
## [1] "NR5A2_10bp_10bp_3"
## [1] "HSF1_neg_10bp_21bp_2"
## [1] "FOS::JUN_5bp_10bp_3"
## [1] "MTF1_10bp_21bp_2"
## [1] "NFIA_10bp_10bp_3"
## [1] "EGR1_5bp_21bp_1"
## [1] "SRF_TF-seq_NA_21bp_mCMV_NA"
## [1] "SMAD2::SMAD3::SMAD4_neg_5bp_21bp_3"
## [1] "PGR_neg_10bp_21bp_3"
## [1] "MYBL2_neg_5bp_21bp_3"
## [1] "MEF2A_10bp_10bp_2"
## [1] "POU2F1_romanov_NA_21bp_mCMV_NA"
## [1] "CEBPA_TF-seq_NA_10bp_mCMV_NA"
## [1] "AHR::ARNT_10bp_21bp_2"
## [1] "ATF6_promega_long_NA_10bp_mCMV_NA"
## [1] "ATF6_promega_NA_10bp_mCMV_NA"
## [1] "FOXO1_10bp_21bp_1"
## [1] "NR1H2_TF-seq_NA_21bp_mCMV_NA"
## [1] "STAT3_TF-seq_NA_10bp_mCMV_NA"
## [1] "MYBL2_5bp_21bp_3"
## [1] "NFAT5_10bp_10bp_3"
## [1] "SMAD2::SMAD3::SMAD4_10bp_10bp_1"
## [1] "CEBPB_neg_10bp_10bp_1"
## [1] "PGR_neg_10bp_10bp_3"
## [1] "RFX1_neg_10bp_21bp_3"
## [1] "MAFA_neg_10bp_10bp_2"
## [1] "NR1H4::RXRA_5bp_21bp_1"
## [1] "RXRA_neg_10bp_10bp_3"
## [1] "E2F1_neg_5bp_10bp_2"
## [1] "NFE2L2_promega_NA_21bp_mCMV_NA"
## [1] "POU2F1_neg_5bp_10bp_3"
## [1] "SMAD2::SMAD3::SMAD4_5bp_10bp_1"
## [1] "NR4A2::RXRA_5bp_21bp_1"
## [1] "NR4A1_neg_5bp_10bp_3"
## [1] "SOX9_neg_5bp_10bp_3"
## [1] "E2F1_5bp_10bp_3"
## [1] "MAF::NFE2_neg_5bp_10bp_1"
## [1] "XBP1_10bp_10bp_2"
## [1] "RUNX2_10bp_10bp_3"
## [1] "PPARG::PPARG_TF-seq_NA_10bp_mCMV_NA"
## [1] "HNF4A_neg_10bp_21bp_2"
## [1] "RFX1_5bp_10bp_2"
## [1] "PPARG::RXRA_neg_5bp_10bp_2"
## [1] "NR1H4::RXRA_TF-seq_NA_10bp_mCMV_NA"
## [1] "FOXO1_10bp_21bp_3"
## [1] "IRF3_TF-seq_NA_21bp_mCMV_NA"
## [1] "MEF2A_neg_5bp_21bp_3"
## [1] "RXRA_5bp_21bp_1"
## [1] "HSF1_promega_NA_21bp_mCMV_NA"
## [1] "NR3C2_romanov_NA_21bp_mCMV_NA"
## [1] "FOXA1_romanov_NA_21bp_mCMV_NA"
## [1] "ONECUT1_5bp_21bp_3"
## [1] "PPARG::RXRA_10bp_10bp_1"
## [1] "HSF1_5bp_10bp_2"
## [1] "NR5A2_5bp_10bp_3"
## [1] "RUNX2_5bp_21bp_1"
## [1] "NR1I3_neg_10bp_21bp_3"
## [1] "MYBL2_5bp_21bp_2"
## [1] "ETS1_neg_5bp_21bp_1"
## [1] "CEBPB_10bp_10bp_1"
## [1] "NR2E3_neg_5bp_21bp_2"
## [1] "GRHL1_10bp_21bp_3"
## [1] "EGR1_neg_5bp_10bp_1"
## [1] "ONECUT1_neg_5bp_10bp_2"
## [1] "HNF4A_10bp_10bp_1"
## [1] "NFAT5_5bp_10bp_2"
## [1] "RARA_TF-seq_NA_21bp_mCMV_NA"
## [1] "AHR::ARNT_10bp_10bp_3"
## [1] "SRF_neg_5bp_21bp_2"
## [1] "TFAP2A_5bp_10bp_3"
## [1] "NR3C1_TF-seq_NA_21bp_mCMV_NA"
## [1] "NR2E3_neg_10bp_10bp_2"
## [1] "REL_5bp_21bp_2"
## [1] "ELK1_romanov_NA_21bp_mCMV_NA"
## [1] "FOXA1_neg_5bp_21bp_1"
## [1] "RORA_5bp_21bp_2"
## [1] "MYBL2_neg_5bp_10bp_2"
## [1] "NFIA_neg_5bp_10bp_2"
## [1] "NFATc1_neg_10bp_10bp_3"
## [1] "FOXO1_neg_10bp_21bp_3"
## [1] "NR5A2_neg_10bp_21bp_3"
## [1] "XBP1_TF-seq_NA_21bp_mCMV_NA"
## [1] "NFATc1_5bp_10bp_1"
## [1] "NR3C2_5bp_10bp_3"
## [1] "NR2E3_neg_5bp_10bp_1"
## [1] "CEBPB_10bp_21bp_2"
## [1] "E2F1_romanov_NA_10bp_mCMV_NA"
## [1] "GATA1_5bp_10bp_3"
## [1] "GATA1_neg_5bp_10bp_2"
## [1] "TEAD1_neg_5bp_21bp_2"
## [1] "SOX9_10bp_21bp_3"
## [1] "SP1_TF-seq_NA_10bp_mCMV_NA"
## [1] "NR1H4::RXRA_10bp_21bp_3"
## [1] "NRF1_5bp_21bp_2"
## [1] "WT1_neg_10bp_10bp_2"
## [1] "NFIA_neg_5bp_21bp_1"
## [1] "SOX2_neg_10bp_21bp_2"
## [1] "POU5F1::SOX2_neg_10bp_10bp_2"
## [1] "PPARG::RXRA_5bp_10bp_3"
## [1] "NR1I2_10bp_10bp_3"
## [1] "RXRA_neg_5bp_21bp_1"
## [1] "THRB_10bp_10bp_2"
## [1] "GATA3_TF-seq_NA_10bp_mCMV_NA"
## [1] "FOXA1_romanov_NA_10bp_mCMV_NA"
## [1] "SRE_promega_NA_21bp_mCMV_NA"
## [1] "NFIA_5bp_10bp_2"
## [1] "THRA_5bp_21bp_3"
## [1] "FOS::JUN_TF-seq_NA_10bp_mCMV_NA"
## [1] "THRB_neg_5bp_10bp_3"
## [1] "MTF1_5bp_10bp_1"
## [1] "PGR_neg_5bp_10bp_3"
## [1] "PGR_5bp_10bp_2"
## [1] "RARA:RXRA_5bp_21bp_2"
## [1] "RUNX2_10bp_21bp_3"
## [1] "TEAD1_neg_5bp_10bp_2"
## [1] "SOX9_10bp_10bp_3"
## [1] "NR1D1_5bp_10bp_1"
## [1] "NR4A1_neg_5bp_21bp_3"
## [1] "TCF7_5bp_10bp_2"
## [1] "REL_neg_10bp_10bp_1"
## [1] "NR3C2_neg_10bp_10bp_1"
## [1] "NR1H2_10bp_21bp_2"
## [1] "NRF1_10bp_10bp_2"
## [1] "ESR1_neg_10bp_10bp_1"
## [1] "ELK1_romanov_NA_10bp_mCMV_NA"
## [1] "GATA4_5bp_10bp_1"
## [1] "NFIA_neg_10bp_21bp_3"
## [1] "FOXO1_neg_5bp_21bp_3"
## [1] "GATA1_neg_5bp_21bp_1"
## [1] "THRA_5bp_10bp_1"
## [1] "MTF1_5bp_21bp_2"
## [1] "NR1I3_10bp_10bp_3"
## [1] "HSF1_neg_5bp_10bp_3"
## [1] "AHR::ARNT_neg_10bp_10bp_2"
## [1] "SOX2_neg_5bp_10bp_2"
## [1] "SOX2_neg_5bp_21bp_1"
## [1] "THRB_10bp_21bp_2"
## [1] "MAF::NFE2_TF-seq_NA_10bp_mCMV_NA"
## [1] "CREB1_TF-seq_NA_10bp_mCMV_NA"
## [1] "NR5A2_neg_5bp_10bp_1"
## [1] "SOX9_neg_10bp_21bp_3"
## [1] "HNF1A_neg_5bp_10bp_2"
## [1] "VDR::RXRA_neg_5bp_10bp_1"
## [1] "RARA:RXRA_5bp_10bp_3"
## [1] "MAFA_neg_10bp_10bp_1"
## [1] "NR1H4::RXRA_neg_5bp_21bp_1"
## [1] "MTF1_promega_NA_10bp_mCMV_NA"
## [1] "TFAP2A_neg_5bp_10bp_3"
## [1] "NFIA_neg_5bp_21bp_2"
## [1] "GATA1_neg_10bp_10bp_2"
## [1] "MEF2A_neg_5bp_21bp_1"
## [1] "ETS1_5bp_21bp_1"
## [1] "AHR::ARNT_neg_10bp_21bp_2"
## [1] "NRF1_neg_5bp_10bp_2"
## [1] "GATA1_5bp_10bp_1"
## [1] "SMAD2::SMAD3::SMAD4_10bp_21bp_2"
## [1] "RARA:RXRA_TF-seq_NA_21bp_mCMV_NA"
## [1] "MTF1_neg_5bp_10bp_3"
## [1] "TFAP2A_10bp_21bp_3"
## [1] "HNF4A_neg_5bp_10bp_3"
## [1] "MEF2A_5bp_10bp_1"
## [1] "SMAD2::SMAD3::SMAD4_neg_10bp_10bp_2"
## [1] "RFX1_10bp_10bp_2"
## [1] "FOS::JUN_neg_5bp_21bp_2"
## [1] "AHR::ARNT_neg_5bp_21bp_1"
## [1] "NFIA_neg_10bp_10bp_3"
## [1] "TEAD1_5bp_10bp_3"
## [1] "RUNX2_10bp_10bp_1"
## [1] "CEBPB_10bp_21bp_3"
## [1] "GATA1_10bp_21bp_3"
## [1] "RXRA_neg_5bp_21bp_3"
## [1] "FOXO1_5bp_21bp_3"
## [1] "CEBPB_neg_5bp_21bp_2"
## [1] "CLOCK_TF-seq_NA_21bp_mCMV_NA"
## [1] "EGR1_neg_5bp_21bp_1"
## [1] "ETS1_romanov_NA_21bp_mCMV_NA"
## [1] "SRF_5bp_21bp_3"
## [1] "RARA:RXRA_10bp_10bp_1"
## [1] "POU2F1_5bp_10bp_1"
## [1] "TEAD1_5bp_10bp_1"
## [1] "NR4A1_5bp_10bp_1"
## [1] "NR1H4::RXRA_neg_10bp_10bp_3"
## [1] "GRHL1_5bp_10bp_1"
## [1] "SRF_neg_10bp_10bp_2"
## [1] "NR5A2_neg_5bp_21bp_3"
## [1] "T_neg_5bp_10bp_2"
## [1] "RBPJ_TF-seq_NA_21bp_mCMV_NA"
## [1] "SMAD2::SMAD3::SMAD4_10bp_10bp_3"
## [1] "FOSL1_neg_5bp_10bp_1"
## [1] "POU2F1_neg_5bp_10bp_2"
## [1] "HNF1A_5bp_10bp_1"
## [1] "E2F1_5bp_10bp_1"
## [1] "NR4A2::RXRA_10bp_21bp_3"
## [1] "TCF7_neg_10bp_10bp_3"
## [1] "THRB_neg_10bp_21bp_2"
## [1] "PGR_neg_5bp_21bp_3"
## [1] "FOXA1_neg_5bp_21bp_2"
## [1] "REL_10bp_10bp_1"
## [1] "ETS1_neg_10bp_10bp_3"
## [1] "HNF4A_neg_5bp_21bp_3"
## [1] "SRF_10bp_21bp_2"
## [1] "GLI1_TF-seq_NA_10bp_mCMV_NA"
## [1] "REL_TF-seq_NA_10bp_mCMV_NA"
## [1] "ETS1_neg_10bp_10bp_2"
## [1] "MAF::NFE2_neg_10bp_10bp_3"
## [1] "HIF1A_promega_NA_21bp_mCMV_NA"
## [1] "NR5A2_neg_5bp_21bp_1"
## [1] "RORA_10bp_21bp_3"
## [1] "POU5F1_5bp_21bp_2"
## [1] "POU5F1::SOX2_neg_5bp_10bp_2"
## [1] "STAT5_promega_long_NA_10bp_mCMV_NA"
## [1] "PPARA::RXRA_romanov_NA_21bp_mCMV_NA"
## [1] "T_neg_5bp_21bp_2"
## [1] "NR1H4::RXRA_neg_5bp_10bp_2"
## [1] "MEF2A_10bp_10bp_3"
## [1] "ESR1_5bp_21bp_2"
## [1] "RFX1_neg_5bp_10bp_3"
## [1] "ONECUT1_neg_10bp_21bp_3"
## [1] "MEF2A_neg_5bp_10bp_2"
## [1] "CEBPB_5bp_21bp_1"
## [1] "NFIA_neg_10bp_10bp_1"
## [1] "AHR::ARNT_5bp_21bp_2"
## [1] "REL_TF-seq_NA_21bp_mCMV_NA"
## [1] "NR5A2_5bp_10bp_2"
## [1] "WT1_5bp_10bp_3"
## [1] "NR5A2_neg_10bp_10bp_3"
## [1] "FOS::JUN_neg_5bp_10bp_2"
## [1] "SOX9_5bp_21bp_1"
## [1] "RFX1_neg_10bp_10bp_2"
## [1] "GATA1_neg_5bp_21bp_3"
## [1] "RUNX2_10bp_21bp_2"
## [1] "HSF1_promega_long_NA_10bp_mCMV_NA"
## [1] "PPARA::RXRA_neg_5bp_21bp_3"
## [1] "AHR::ARNT_5bp_10bp_2"
## [1] "RUNX2_TF-seq_NA_10bp_mCMV_NA"
## [1] "SOX2_neg_5bp_21bp_2"
## [1] "FOXO1_5bp_10bp_2"
## [1] "POU5F1::SOX2_neg_5bp_21bp_1"
## [1] "STAT1::STAT2_neg_10bp_10bp_2"
## [1] "PPARG::RXRA_5bp_10bp_2"
## [1] "NFATc1_10bp_21bp_3"
## [1] "POU5F1::SOX2_neg_5bp_21bp_2"
## [1] "TFAP2A_10bp_10bp_1"
## [1] "CREB1_promega_NA_10bp_mCMV_NA"
## [1] "ETS1_neg_5bp_21bp_2"
## [1] "FOXO1_5bp_21bp_2"
## [1] "MYBL2_neg_5bp_10bp_3"
## [1] "NR1I3_10bp_21bp_3"
## [1] "NR1H2_5bp_21bp_2"
## [1] "TFEB_TF-seq_NA_10bp_mCMV_NA"
## [1] "PPARA::RXRA_neg_5bp_21bp_2"
## [1] "POU5F1_5bp_21bp_1"
## [1] "SMAD2::SMAD3::SMAD4_TF-seq_NA_10bp_mCMV_NA"
## [1] "MAF::NFE2_5bp_21bp_1"
## [1] "HNF4A_TF-seq_NA_10bp_mCMV_NA"
## [1] "HNF1A_10bp_21bp_2"
## [1] "PPARA::RXRA_10bp_10bp_1"
## [1] "ONECUT1_neg_10bp_21bp_2"
## [1] "NR5A2_neg_5bp_21bp_2"
## [1] "NFIA_5bp_10bp_3"
## [1] "GATA4_10bp_10bp_1"
## [1] "NR3C2_romanov_NA_10bp_mCMV_NA"
## [1] "POU5F1_5bp_10bp_2"
## [1] "FOS::JUN_promega_NA_10bp_mCMV_NA"
## [1] "AHR::ARNT_neg_5bp_10bp_1"
## [1] "ETS1_10bp_21bp_3"
## [1] "XBP1_promega_long_NA_10bp_mCMV_NA"
## [1] "GATA4_10bp_10bp_2"
## [1] "PPARG::RXRA_TF-seq_NA_10bp_mCMV_NA"
## [1] "NR5A2_neg_10bp_10bp_2"
## [1] "XBP1_promega_NA_21bp_mCMV_NA"
## [1] "SP1_TF-seq_NA_21bp_mCMV_NA"
## [1] "NR1H4::RXRA_neg_5bp_21bp_2"
## [1] "REL_5bp_10bp_1"
## [1] "NR1H4::RXRA_10bp_10bp_1"
## [1] "POU2F1_10bp_21bp_2"
## [1] "HNF1A_neg_10bp_21bp_2"
## [1] "STAT1::STAT2_5bp_21bp_3"
## [1] "SOX2_romanov_NA_10bp_mCMV_NA"
## [1] "NRF1_neg_5bp_21bp_1"
## [1] "PPARA::RXRA_10bp_21bp_2"
## [1] "NR1I2_neg_10bp_10bp_2"
## [1] "NR3C2_neg_5bp_21bp_1"
## [1] "NFE2_romanov_NA_21bp_mCMV_NA"
## [1] "NRF1_5bp_21bp_3"
## [1] "MYBL2_5bp_10bp_3"
## [1] "MAF::NFE2_neg_5bp_21bp_1"
## [1] "FOS::JUN_5bp_10bp_1"
## [1] "AHR::ARNT_neg_5bp_21bp_2"
## [1] "TCF7_romanov_NA_21bp_mCMV_NA"
## [1] "TEAD1_neg_5bp_21bp_1"
## [1] "MAF::NFE2_neg_5bp_21bp_2"
## [1] "SMAD2::SMAD3::SMAD4_promega_NA_21bp_mCMV_NA"
## [1] "NFAT5_10bp_10bp_1"
## [1] "XBP1_neg_5bp_21bp_1"
## [1] "SOX2_10bp_21bp_1"
## [1] "MAF::NFE2_neg_10bp_21bp_3"
## [1] "TFAP2A_5bp_10bp_1"
## [1] "STAT1::STAT2_10bp_10bp_1"
## [1] "REL_neg_5bp_10bp_1"
## [1] "MAFA_neg_5bp_21bp_2"
## [1] "HNF1A_5bp_21bp_3"
## [1] "MYBL2_neg_5bp_10bp_1"
## [1] "NR2E3_neg_10bp_21bp_3"
## [1] "NFATc1_neg_5bp_21bp_3"
## [1] "IRF3_promega_NA_10bp_mCMV_NA"
## [1] "MYBL2_5bp_10bp_1"
## [1] "FOXA1_10bp_10bp_3"
## [1] "VDR::RXRA_neg_5bp_21bp_2"
## [1] "AR_5bp_21bp_2"
## [1] "PPARG::RXRA_neg_10bp_10bp_1"
## [1] "HSF1_romanov_NA_21bp_mCMV_NA"
## [1] "RORA_neg_5bp_10bp_3"
## [1] "NR1D1_neg_5bp_21bp_1"
## [1] "SP1_romanov_NA_21bp_mCMV_NA"
## [1] "HNF4A_5bp_21bp_1"
## [1] "NFIA_10bp_21bp_2"
## [1] "AR_neg_10bp_21bp_3"
## [1] "HSF1_10bp_21bp_3"
## [1] "POU5F1_10bp_21bp_2"
## [1] "NR1H4::RXRA_neg_10bp_21bp_3"
## [1] "GATA4_10bp_10bp_3"
## [1] "MAFA_neg_5bp_21bp_3"
## [1] "NR4A2::RXRA_10bp_10bp_1"
## [1] "ONECUT1_romanov_NA_21bp_mCMV_NA"
## [1] "POU2F1_neg_10bp_10bp_2"
## [1] "NR1I3_neg_5bp_10bp_2"
## [1] "XBP1_5bp_21bp_1"
## [1] "TFAP2A_romanov_NA_21bp_mCMV_NA"
## [1] "NR5A2_5bp_21bp_1"
## [1] "TCF7_neg_10bp_21bp_2"
## [1] "MEF2A_neg_5bp_10bp_3"
## [1] "TCF7_5bp_21bp_1"
## [1] "NR4A1_10bp_10bp_3"
## [1] "FOXO1_neg_10bp_21bp_2"
## [1] "NR5A2_10bp_21bp_2"
## [1] "PPARG::RXRA_10bp_10bp_2"
## [1] "E2F1_neg_5bp_21bp_1"
## [1] "RARA:RXRA_neg_5bp_10bp_2"
## [1] "HNF4A_5bp_10bp_1"
## [1] "AR_neg_10bp_10bp_2"
## [1] "NR2E3_neg_10bp_10bp_3"
## [1] "MYBL2_neg_10bp_21bp_3"
## [1] "NR1H2_neg_10bp_10bp_1"
## [1] "SRF_10bp_10bp_1"
## [1] "PGR_neg_10bp_10bp_2"
## [1] "RXRA_5bp_10bp_1"
## [1] "SOX9_neg_5bp_21bp_2"
## [1] "NFATc1_5bp_21bp_1"
## [1] "NR3C2_10bp_10bp_2"
## [1] "PPARA::RXRA_5bp_10bp_1"
## [1] "VDR::RXRA_neg_10bp_10bp_1"
## [1] "SOX9_neg_5bp_21bp_3"
## [1] "NR3C2_10bp_10bp_1"
## [1] "EGR1_neg_10bp_10bp_1"
## [1] "VDR::RXRA_5bp_10bp_1"
## [1] "THRA_5bp_10bp_2"
## [1] "MAF::NFE2_TF-seq_NA_21bp_mCMV_NA"
## [1] "XBP1_romanov_NA_10bp_mCMV_NA"
## [1] "THRB_neg_10bp_10bp_1"
## [1] "CEBPB_neg_5bp_21bp_3"
## [1] "STAT1.50_TF-seq_NA_21bp_mCMV_NA"
## [1] "NRF1_neg_10bp_21bp_2"
## [1] "ATF6_TF-seq_NA_21bp_mCMV_NA"
## [1] "SRF_neg_5bp_10bp_3"
## [1] "HNF1A_neg_5bp_21bp_1"
## [1] "RFX1_5bp_21bp_3"
## [1] "RORA_neg_5bp_10bp_1"
## [1] "CEBPB_neg_5bp_10bp_2"
## [1] "NR4A2::RXRA_neg_10bp_10bp_3"
## [1] "CEBPB_neg_5bp_10bp_3"
## [1] "PPARA::RXRA_10bp_10bp_2"
## [1] "NR5A2_10bp_10bp_2"
## [1] "RARA_TF-seq_NA_10bp_mCMV_NA"
## [1] "HSF1_neg_10bp_10bp_2"
## [1] "AHR::ARNT_neg_5bp_10bp_2"
## [1] "NFKB1_promega_long_NA_10bp_mCMV_NA"
## [1] "WT1_5bp_21bp_3"
## [1] "NFATc1_10bp_10bp_3"
## [1] "PPARA::RXRA_5bp_10bp_2"
## [1] "NR5A2_10bp_10bp_1"
## [1] "NFATc1_neg_10bp_21bp_2"
## [1] "HSF1_neg_10bp_10bp_1"
## [1] "MYBL2_10bp_21bp_2"
## [1] "ATF2_TF-seq_NA_10bp_mCMV_NA"
## [1] "HSF1_5bp_21bp_1"
## [1] "MTF1_5bp_21bp_3"
## [1] "VDR::RXRA_5bp_21bp_1"
## [1] "ETS1_neg_10bp_21bp_3"
## [1] "RUNX2_neg_10bp_21bp_3"
## [1] "AHR::ARNT_TF-seq_NA_21bp_mCMV_NA"
## [1] "HNF1A_5bp_10bp_2"
## [1] "E2F1_neg_5bp_10bp_3"
## [1] "TP53_romanov_NA_10bp_mCMV_NA"
## [1] "NRF1_5bp_21bp_1"
## [1] "GATA1_10bp_10bp_2"
## [1] "ESR1_5bp_10bp_3"
## [1] "MAF::NFE2_neg_10bp_10bp_1"
## [1] "RARA:RXRA_neg_5bp_21bp_1"
## [1] "PPARG::RXRA_neg_10bp_21bp_3"
## [1] "STAT5_promega_NA_21bp_mCMV_NA"
## [1] "TFAP2A_10bp_10bp_3"
## [1] "ESR1_neg_5bp_10bp_2"
## [1] "TEAD1_10bp_21bp_2"
## [1] "NFIA_5bp_21bp_3"
## [1] "SOX2_5bp_21bp_2"
## [1] "TCF7_neg_10bp_10bp_2"
## [1] "ELK1_TF-seq_NA_10bp_mCMV_NA"
## [1] "SMAD2::SMAD3::SMAD4_neg_5bp_10bp_3"
## [1] "RXRA_10bp_10bp_3"
## [1] "MAF::NFE2_neg_5bp_21bp_3"
## [1] "HNF1A_neg_5bp_21bp_3"
## [1] "ESR1_10bp_10bp_3"
## [1] "THRA_neg_10bp_10bp_2"
## [1] "MTF1_10bp_10bp_2"
## [1] "GATA1_10bp_10bp_3"
## [1] "AHR::ARNT_neg_10bp_10bp_1"
## [1] "SRF_10bp_21bp_3"
## [1] "PPARA::RXRA_10bp_10bp_3"
## [1] "SMAD2::SMAD3::SMAD4_5bp_10bp_2"
## [1] "PPARG::RXRA_10bp_21bp_2"
## [1] "NR4A1_neg_10bp_10bp_2"
## [1] "THRA_neg_5bp_21bp_3"
## [1] "NR1D1_5bp_10bp_3"
## [1] "RXRA_5bp_10bp_3"
## [1] "NFIA_neg_10bp_21bp_2"
## [1] "POU5F1_10bp_21bp_3"
## [1] "NR4A2::RXRA_neg_5bp_10bp_2"
## [1] "RFX1_neg_10bp_10bp_1"
## [1] "NR4A2::RXRA_5bp_10bp_3"
## [1] "SRF_neg_10bp_10bp_1"
## [1] "NR3C2_10bp_21bp_2"
## [1] "TFAP2A_neg_10bp_10bp_2"
## [1] "ESR1_neg_5bp_10bp_1"
## [1] "AR_neg_10bp_21bp_2"
## [1] "SOX9_5bp_10bp_3"
## [1] "NRF1_neg_5bp_21bp_2"
## [1] "POU2F1_neg_10bp_21bp_2"
## [1] "NR1I2_5bp_10bp_3"
## [1] "NR4A1_neg_10bp_21bp_2"
## [1] "XBP1_neg_5bp_10bp_1"
## [1] "ONECUT1_neg_5bp_21bp_2"
## [1] "RFX1_10bp_10bp_1"
## [1] "GRHL1_10bp_21bp_2"
## [1] "STAT1_TF-seq_NA_10bp_mCMV_NA"
## [1] "FOXA1_5bp_21bp_3"
## [1] "NR4A2::RXRA_neg_10bp_21bp_3"
## [1] "RFX1_neg_5bp_10bp_2"
## [1] "AR_10bp_21bp_2"
## [1] "POU2F1_5bp_21bp_3"
## [1] "GATA1_10bp_21bp_2"
## [1] "RFX1_10bp_21bp_3"
## [1] "REL_10bp_10bp_3"
## [1] "FOSL1_5bp_21bp_1"
## [1] "EGR1_neg_10bp_10bp_3"
## [1] "NR1I2_neg_10bp_10bp_3"
## [1] "THRA_neg_5bp_10bp_2"
## [1] "SP1_romanov_NA_10bp_mCMV_NA"
## [1] "STAT3_promega_NA_21bp_mCMV_NA"
## [1] "STAT1::STAT2_neg_5bp_21bp_3"
## [1] "RFX1_neg_10bp_21bp_2"
## [1] "FOSL1_10bp_10bp_2"
## [1] "NR1I2_10bp_21bp_3"
## [1] "CREL_TF-seq_NA_10bp_mCMV_NA"
## [1] "NRF1_5bp_10bp_1"
## [1] "SOX9_5bp_10bp_1"
## [1] "CREL_TF-seq_NA_21bp_mCMV_NA"
## [1] "ONECUT1_neg_5bp_21bp_1"
## [1] "AR_5bp_21bp_3"
## [1] "POU5F1::SOX2_neg_10bp_10bp_3"
## [1] "FOXA1_5bp_10bp_1"
## [1] "NR1H4::RXRA_neg_10bp_10bp_2"
## [1] "MAF::NFE2_5bp_21bp_2"
## [1] "MTF1_neg_5bp_21bp_3"
## [1] "FOXA1_10bp_21bp_2"
## [1] "GATA4_5bp_21bp_2"
## [1] "SRF_10bp_10bp_3"
## [1] "FOS::JUN_neg_5bp_21bp_1"
## [1] "THRA_neg_5bp_10bp_1"
## [1] "NR5A2_neg_5bp_10bp_3"
## [1] "FOS::JUN_promega_NA_21bp_mCMV_NA"
## [1] "ONECUT1_neg_10bp_10bp_3"
## [1] "HIF1A_promega_long_NA_10bp_mCMV_NA"
## [1] "TCF7_10bp_21bp_3"
## [1] "RUNX2_neg_10bp_21bp_2"
## [1] "SOX2_neg_10bp_10bp_1"
## [1] "NFIA_neg_5bp_10bp_3"
## [1] "NR3C2_neg_5bp_10bp_1"
## [1] "CEBPB_romanov_NA_21bp_mCMV_NA"
## [1] "RORA_10bp_10bp_1"
## [1] "SOX2_5bp_10bp_1"
## [1] "TEAD1_TF-seq_NA_21bp_mCMV_NA"
## [1] "XBP1_romanov_NA_21bp_mCMV_NA"
## [1] "THRB_neg_5bp_21bp_1"
## [1] "NR1I2_neg_10bp_10bp_1"
## [1] "HSF1_5bp_10bp_3"
## [1] "TEAD1_neg_10bp_10bp_1"
## [1] "EGR1_neg_10bp_10bp_2"
## [1] "ESR1_10bp_10bp_2"
## [1] "NR1I3_5bp_21bp_2"
## [1] "POU5F1::SOX2_10bp_10bp_3"
## [1] "TEAD1_neg_5bp_10bp_3"
## [1] "NR4A2::RXRA_neg_10bp_10bp_2"
## [1] "NR1H2_romanov_NA_21bp_mCMV_NA"
## [1] "HSF1_10bp_10bp_3"
## [1] "EGR1_neg_5bp_21bp_2"
## [1] "NR4A1_5bp_21bp_1"
## [1] "RFX1_10bp_10bp_3"
## [1] "GRHL1_5bp_21bp_1"
## [1] "NFATc1_neg_10bp_10bp_1"
## [1] "EGR1_neg_5bp_10bp_3"
## [1] "PGR_10bp_10bp_2"
## [1] "TEAD1_5bp_21bp_1"
## [1] "E2F1_neg_5bp_21bp_3"
## [1] "TEAD1_neg_5bp_10bp_1"
## [1] "NR1H2_neg_5bp_21bp_1"
## [1] "ONECUT1_neg_10bp_10bp_1"
## [1] "STAT1::STAT2_promega_NA_21bp_mCMV_NA"
## [1] "RUNX2_TF-seq_NA_21bp_mCMV_NA"
## [1] "TEAD1_5bp_21bp_3"
## [1] "ETS1_5bp_10bp_3"
## [1] "STAT1::STAT2_10bp_21bp_2"
## [1] "GRHL1_5bp_21bp_3"
## [1] "GRHL1_5bp_21bp_2"
## [1] "RARA:RXRA_neg_10bp_10bp_1"
## [1] "SMAD2::SMAD3::SMAD4_neg_10bp_21bp_2"
## [1] "THRA_10bp_10bp_2"
## [1] "MAF::NFE2_neg_10bp_21bp_2"
## [1] "NFIA_10bp_21bp_3"
## [1] "SOX9_neg_10bp_21bp_2"
## [1] "HIF1A_promega_NA_10bp_mCMV_NA"
## [1] "ETS1_5bp_10bp_1"
## [1] "NFATc1_10bp_10bp_1"
## [1] "NRF1_5bp_10bp_2"
## [1] "AHR::ARNT_5bp_10bp_3"
## [1] "POU2F1_10bp_10bp_3"
## [1] "WT1_10bp_21bp_2"
## [1] "ONECUT1_10bp_10bp_1"
## [1] "NRF1_neg_5bp_21bp_3"
## [1] "TFAP2A_neg_5bp_21bp_3"
## [1] "RORA_TF-seq_NA_10bp_mCMV_NA"
## [1] "FOXO1_neg_5bp_21bp_2"
## [1] "NR1I3_neg_10bp_10bp_2"
## [1] "MTF1_neg_5bp_10bp_1"
## [1] "MAF::NFE2_5bp_10bp_3"
## [1] "FOS::JUN_5bp_21bp_2"
## [1] "POU2F1_5bp_10bp_3"
## [1] "TEAD1_5bp_21bp_2"
## [1] "HSF1_10bp_10bp_2"
## [1] "REL_neg_5bp_21bp_1"
## [1] "NR1H2_neg_5bp_10bp_1"
## [1] "XBP1_neg_5bp_21bp_3"
## [1] "NR1I2_5bp_21bp_3"
## [1] "WT1_neg_5bp_10bp_3"
## [1] "RFX1_neg_5bp_21bp_3"
## [1] "NFE2L2_TF-seq_NA_21bp_mCMV_NA"
## [1] "NR1H2_10bp_10bp_1"
## [1] "TEAD1_neg_10bp_21bp_3"
## [1] "MTF1_neg_10bp_21bp_1"
## [1] "PPARG::RXRA_TF-seq_NA_21bp_mCMV_NA"
## [1] "PPARG::RXRA_neg_10bp_10bp_3"
## [1] "NFATc1_neg_5bp_10bp_2"
## [1] "POU5F1_5bp_10bp_1"
## [1] "NR3C2_10bp_10bp_3"
## [1] "FOS::JUN_10bp_10bp_1"
## [1] "SOX9_neg_10bp_10bp_1"
## [1] "NR1H2_neg_10bp_21bp_3"
## [1] "XBP1_TF-seq_NA_10bp_mCMV_NA"
## [1] "ESR1_5bp_21bp_1"
## [1] "SRF_neg_10bp_21bp_3"
## [1] "POU5F1::SOX2_5bp_21bp_3"
## [1] "MYBL2_neg_10bp_10bp_2"
## [1] "AR_neg_5bp_21bp_3"
## [1] "ONECUT1_5bp_10bp_3"
## [1] "RORA_neg_10bp_10bp_2"
## [1] "THRB_neg_10bp_10bp_2"
## [1] "SRF_5bp_10bp_2"
## [1] "HNF4A_5bp_21bp_2"
## [1] "NFIA_5bp_21bp_2"
## [1] "FOXA1_neg_5bp_10bp_3"
## [1] "VDR::RXRA_10bp_21bp_3"
## [1] "VDR::RXRA_10bp_10bp_1"
## [1] "RFX1_neg_10bp_10bp_3"
## [1] "TP53_promega_long_NA_10bp_mCMV_NA"
## [1] "ETS1_neg_5bp_10bp_1"
## [1] "NR4A2::RXRA_neg_5bp_21bp_3"
## [1] "CEBPB_TF-seq_NA_10bp_mCMV_NA"
## [1] "VDR::RXRA_neg_10bp_10bp_2"
## [1] "AHR::ARNT_neg_10bp_21bp_3"
## [1] "NR1H4::RXRA_10bp_21bp_2"
## [1] "FOSL1_5bp_10bp_1"
## [1] "FOS::JUN_neg_10bp_21bp_3"
## [1] "ATF6_TF-seq_NA_10bp_mCMV_NA"
## [1] "HNF4A_5bp_10bp_3"
## [1] "STAT1::STAT2_neg_5bp_10bp_1"
## [1] "RUNX2_neg_10bp_10bp_3"
## [1] "MAFA_neg_10bp_21bp_3"
## [1] "WT1_neg_5bp_10bp_1"
## [1] "TCF7_10bp_21bp_2"
## [1] "MYBL2_10bp_10bp_2"
## [1] "FOS::JUN_5bp_21bp_3"
## [1] "TCF7_neg_5bp_10bp_2"
## [1] "CEBPB_neg_5bp_10bp_1"
## [1] "RFX1_neg_10bp_21bp_1"
## [1] "PGR_5bp_10bp_3"
## [1] "HSF1_5bp_10bp_1"
## [1] "EGR1_5bp_10bp_3"
## [1] "SMAD2::SMAD3::SMAD4_promega_NA_10bp_mCMV_NA"
## [1] "NR1H2_neg_5bp_21bp_2"
## [1] "EGR1_10bp_10bp_3"
## [1] "STAT1::STAT2_neg_10bp_10bp_1"
## [1] "NRF1_10bp_21bp_3"
## [1] "TFAP2A_neg_10bp_21bp_3"
## [1] "NR1D1_10bp_10bp_1"
## [1] "XBP1_neg_5bp_21bp_2"
## [1] "GATA1_romanov_NA_21bp_mCMV_NA"
## [1] "FOXA1_neg_10bp_21bp_3"
## [1] "HSF1_10bp_21bp_2"
## [1] "HSF1_neg_5bp_21bp_2"
## [1] "THRB_neg_10bp_10bp_3"
## [1] "IRF3_promega_NA_21bp_mCMV_NA"
## [1] "FOXO1_neg_5bp_21bp_1"
## [1] "MAF::NFE2_neg_5bp_10bp_2"
## [1] "Myc_romanov_NA_21bp_mCMV_NA"
## [1] "ETS1_neg_5bp_21bp_3"
## [1] "MYBL2_romanov_NA_10bp_mCMV_NA"
## [1] "NR4A1_10bp_10bp_2"
## [1] "STAT1::STAT2_neg_10bp_21bp_2"
## [1] "ATF4_TF-seq_NA_21bp_mCMV_NA"
## [1] "POU5F1_10bp_10bp_3"
## [1] "RUNX2_neg_10bp_10bp_1"
## [1] "RORA_5bp_10bp_1"
## [1] "STAT1::STAT2_10bp_10bp_3"
## [1] "THRB_5bp_21bp_2"
## [1] "STAT1.50_TF-seq_NA_10bp_mCMV_NA"
## [1] "NR1I3_10bp_21bp_2"
## [1] "POU5F1_neg_5bp_10bp_2"
## [1] "THRB_neg_5bp_21bp_3"
## [1] "NFYA_TF-seq_NA_10bp_mCMV_NA"
## [1] "STAT4_TF-seq_NA_21bp_mCMV_NA"
## [1] "SOX9_10bp_10bp_2"
## [1] "FOXO1_neg_5bp_10bp_1"
## [1] "TP53_romanov_NA_21bp_mCMV_NA"
## [1] "MEF2A_5bp_21bp_2"
## [1] "TCF7_5bp_10bp_1"
## [1] "IRF1_TF-seq_NA_21bp_mCMV_NA"
## [1] "NR3C2_neg_5bp_21bp_3"
## [1] "NR1H4::RXRA_5bp_10bp_2"
## [1] "HNF4A_neg_5bp_10bp_1"
## [1] "XBP1_10bp_21bp_2"
## [1] "PGR_neg_5bp_10bp_1"
## [1] "PGR_10bp_10bp_3"
## [1] "TP53_promega_NA_21bp_mCMV_NA"
## [1] "CEBPB_5bp_10bp_1"
## [1] "E2F1_5bp_10bp_2"
## [1] "ONECUT1_neg_5bp_10bp_1"
## [1] "AR_5bp_10bp_1"
## [1] "PGR_neg_5bp_21bp_2"
## [1] "FOXO1_neg_5bp_10bp_3"
## [1] "NR3C2_10bp_21bp_3"
## [1] "NR1I2_neg_5bp_10bp_1"
## [1] "AHR::ARNT_romanov_NA_21bp_mCMV_NA"
## [1] "NR1D1_10bp_21bp_2"
## [1] "NR1I2_neg_5bp_10bp_3"
## [1] "FOXA1_neg_10bp_21bp_2"
## [1] "NRF1_neg_5bp_10bp_3"
## [1] "POU2F1_neg_5bp_21bp_3"
## [1] "CREB1_TF-romanov_NA_21bp_mCMV_NA"
## [1] "NRF1_neg_5bp_10bp_1"
## [1] "SOX2_neg_5bp_10bp_1"
## [1] "AR_10bp_21bp_3"
## [1] "T_neg_10bp_10bp_3"
## [1] "SOX2_neg_10bp_21bp_3"
## [1] "REL_5bp_10bp_2"
## [1] "PPARG::RXRA_5bp_21bp_2"
## [1] "NR2E3_neg_5bp_21bp_1"
## [1] "TFAP2A_neg_5bp_21bp_1"
## [1] "PPARG::RXRA_2_TF-seq_NA_21bp_mCMV_NA"
## [1] "ETS1_5bp_21bp_2"
## [1] "HSF1_neg_5bp_21bp_3"
## [1] "GRHL1_10bp_10bp_2"
## [1] "NR1H2_10bp_10bp_3"
## [1] "THRA_neg_10bp_10bp_1"
## [1] "NFAT5_10bp_10bp_2"
## [1] "HNF1A_10bp_21bp_3"
## [1] "GATA1_neg_10bp_10bp_1"
## [1] "ETS1_5bp_21bp_3"
## [1] "E2F1_neg_10bp_10bp_3"
## [1] "TEAD1_5bp_10bp_2"
## [1] "EGR1_neg_5bp_10bp_2"
## [1] "FOS::JUN_romanov_NA_21bp_mCMV_NA"
## [1] "GATA4_10bp_21bp_3"
## [1] "REL_5bp_21bp_3"
## [1] "AHR::ARNT_5bp_21bp_1"
## [1] "NR2E3_neg_10bp_21bp_2"
## [1] "NR4A2::RXRA_5bp_21bp_2"
## [1] "NR1D1_neg_5bp_10bp_1"
## [1] "E2F1_10bp_10bp_3"
## [1] "NFE2L2_promega_long_NA_10bp_mCMV_NA"
## [1] "NR3C2_5bp_21bp_3"
## [1] "MEF2A_10bp_10bp_1"
## [1] "NFATc1_neg_5bp_21bp_1"
## [1] "NR3C2_neg_5bp_10bp_2"
## [1] "RFX1_10bp_21bp_1"
## [1] "TEAD1_10bp_10bp_1"
## [1] "XBP1_promega_NA_10bp_mCMV_NA"
## [1] "MAF::NFE2_5bp_21bp_3"
## [1] "NR4A1_10bp_21bp_2"
## [1] "NR5A2_5bp_10bp_1"
## [1] "RFX1_10bp_21bp_2"
## [1] "WT1_neg_10bp_10bp_3"
## [1] "PPARG::RXRA_5bp_21bp_3"
## [1] "FOXA1_5bp_10bp_3"
## [1] "ETS1_10bp_10bp_1"
## [1] "NR1D1_5bp_10bp_2"
## [1] "SMAD2::SMAD3::SMAD4_neg_5bp_21bp_2"
## [1] "MAF::NFE2_10bp_10bp_1"
## [1] "POU5F1_neg_5bp_21bp_1"
## [1] "HSF1_neg_10bp_10bp_3"
## [1] "FOSL1_10bp_21bp_3"
## [1] "POU5F1_neg_10bp_21bp_2"
## [1] "RARA:RXRA_5bp_10bp_1"
## [1] "THRB_5bp_10bp_3"
## [1] "FOXO1_neg_10bp_10bp_3"
## [1] "FOSL1_neg_10bp_10bp_1"
## [1] "NR1I3_neg_5bp_21bp_1"
## [1] "SRE_promega_long_NA_10bp_mCMV_NA"
## [1] "RORA_10bp_10bp_2"
## [1] "EGR1_romanov_NA_21bp_mCMV_NA"
## [1] "NR1H2_neg_10bp_10bp_3"
## [1] "AR_neg_5bp_10bp_2"
## [1] "HNF4A_5bp_21bp_3"
## [1] "SMAD2::SMAD3::SMAD4_TF-seq_NA_21bp_mCMV_NA"
## [1] "REL_neg_5bp_21bp_3"
## [1] "RARA:RXRA_neg_5bp_21bp_3"
## [1] "IRF3_TF-seq_NA_10bp_mCMV_NA"
## [1] "NR1H2_5bp_21bp_3"
## [1] "STAT1::STAT2_10bp_10bp_2"
## [1] "MAF::NFE2_neg_5bp_10bp_3"
## [1] "NFKB1_romanov_NA_10bp_mCMV_NA"
## [1] "MEF2A_10bp_21bp_2"
## [1] "EGR1_romanov_NA_10bp_mCMV_NA"
## [1] "NR1I2_neg_5bp_21bp_1"
## [1] "XBP1_5bp_10bp_2"
## [1] "POU2F1_10bp_10bp_1"
## [1] "NR1I2_neg_5bp_10bp_2"
## [1] "EGR1_neg_10bp_21bp_2"
## [1] "STAT1::STAT2_TF-seq_NA_21bp_mCMV_NA"
## [1] "T_neg_10bp_21bp_3"
## [1] "NRF1_10bp_21bp_2"
## [1] "PGR_5bp_21bp_3"
## [1] "STAT1::STAT2_5bp_10bp_2"
## [1] "EGR1_5bp_21bp_3"
## [1] "SOX2_10bp_10bp_1"
## [1] "T_neg_5bp_10bp_3"
## [1] "XBP1_neg_10bp_21bp_2"
## [1] "RUNX2_5bp_10bp_2"
## [1] "HNF1A_neg_10bp_21bp_3"
## [1] "MEF2A_10bp_21bp_3"
## [1] "THRA_5bp_10bp_3"
## [1] "ESR1_neg_5bp_10bp_3"
## [1] "NFE2L2_TF-seq_NA_10bp_mCMV_NA"
## [1] "NRF1_10bp_10bp_1"
## [1] "HNF4A_TF-seq_NA_21bp_mCMV_NA"
## [1] "AR_10bp_10bp_3"
## [1] "MAFA_neg_5bp_10bp_2"
## [1] "VDR::RXRA_neg_10bp_21bp_3"
## [1] "HNF1A_5bp_10bp_3"
## [1] "FOXO1_10bp_10bp_1"
## [1] "NR5A2_10bp_21bp_3"
## [1] "POU5F1::SOX2_10bp_21bp_3"
## [1] "SRF_neg_5bp_21bp_3"
## [1] "PAX6_romanov_NA_21bp_mCMV_NA"
## [1] "TEAD1_10bp_10bp_2"
## [1] "XBP1_5bp_10bp_3"
## [1] "NR4A1_neg_10bp_10bp_1"
## [1] "REL_neg_5bp_21bp_2"
## [1] "REL_5bp_10bp_3"
## [1] "EGR1_5bp_21bp_2"
## [1] "PPARA::RXRA_10bp_21bp_3"
## [1] "AR_5bp_10bp_3"
## [1] "NR1D1_neg_5bp_10bp_2"
## [1] "TCF7_neg_10bp_21bp_3"
## [1] "PPARA::RXRA_5bp_10bp_3"
## [1] "POU2F1_neg_10bp_10bp_3"
## [1] "RUNX2_neg_5bp_21bp_1"
## [1] "SOX2_5bp_21bp_1"
## [1] "SOX9_5bp_10bp_2"
## [1] "FOS::JUN_5bp_21bp_1"
## [1] "NR1D1_5bp_21bp_3"
## [1] "PPARG::RXRA_5bp_10bp_1"
## [1] "GATA1_neg_10bp_10bp_3"
## [1] "NR1I3_5bp_21bp_3"
## [1] "NR3C1_TF-seq_NA_10bp_mCMV_NA"
## [1] "NR1I2_10bp_10bp_2"
## [1] "POU5F1_neg_5bp_10bp_1"
## [1] "NFATc1_10bp_21bp_2"
## [1] "NR3C2_neg_5bp_21bp_2"
## [1] "CEBPB_10bp_10bp_3"
## [1] "XBP1_5bp_21bp_3"
## [1] "T_neg_5bp_21bp_1"
## [1] "GRHL1_5bp_10bp_2"
## [1] "TCF7_promega_NA_21bp_mCMV_NA"
## [1] "NR4A2::RXRA_neg_5bp_10bp_1"
## [1] "NFKB1_promega_NA_21bp_mCMV_NA"
## [1] "SMAD2::SMAD3::SMAD4_neg_5bp_10bp_2"
## [1] "THRA_neg_5bp_10bp_3"
## [1] "ONECUT1_5bp_10bp_1"
## [1] "TCF7_10bp_10bp_3"
## [1] "FOS::JUN_neg_10bp_10bp_1"
## [1] "MEF2A_neg_10bp_10bp_2"
## [1] "MEF2A_neg_5bp_10bp_1"
## [1] "HSF1_promega_NA_10bp_mCMV_NA"
## [1] "EGR1_TF-seq_NA_10bp_mCMV_NA"
## [1] "FOSL1_neg_5bp_21bp_3"
## [1] "RUNX2_5bp_21bp_2"
## [1] "SOX2_10bp_10bp_2"
## [1] "MEF2A_neg_5bp_21bp_2"
## [1] "PGR_neg_10bp_21bp_2"
## [1] "ESR1_10bp_21bp_3"
## [1] "CEBPB_neg_10bp_10bp_2"
## [1] "EGR1_10bp_21bp_3"
## [1] "ESR1_neg_10bp_10bp_2"
## [1] "POU2F1_5bp_21bp_1"
## [1] "NR1H2_neg_10bp_21bp_2"
## [1] "RARA:RXRA_neg_10bp_10bp_3"
## [1] "NFIA_10bp_10bp_2"
## [1] "E2F1_5bp_21bp_3"
## [1] "SMAD2::SMAD3::SMAD4_neg_10bp_21bp_3"
## [1] "HSF1_neg_5bp_21bp_1"
## [1] "SMAD2::SMAD3::SMAD4_5bp_21bp_1"
## [1] "NR1H2_10bp_21bp_3"
## [1] "NFIA_neg_10bp_10bp_2"
## [1] "MYBL2_neg_10bp_21bp_2"
## [1] "EGR1_TF-seq_NA_21bp_mCMV_NA"
## [1] "NR3C1_romanov_NA_10bp_mCMV_NA"
## [1] "NFAT5_10bp_21bp_3"
## [1] "E2F1_10bp_21bp_2"
## [1] "THRB_neg_5bp_10bp_2"
## [1] "FOS::JUN_neg_5bp_21bp_3"
## [1] "HNF4A_10bp_10bp_3"
## [1] "RFX1_neg_5bp_10bp_1"
## [1] "SMAD2::SMAD3::SMAD4_neg_10bp_10bp_3"
## [1] "T_neg_10bp_10bp_1"
## [1] "FOS::JUN_romanov_NA_10bp_mCMV_NA"
## [1] "ETS1_neg_5bp_10bp_2"
## [1] "POU5F1_neg_10bp_10bp_1"
## [1] "NR1H2_5bp_10bp_3"
## [1] "GLI1_romanov_NA_10bp_mCMV_NA"
## [1] "AR_neg_5bp_21bp_1"
## [1] "THRA_neg_10bp_21bp_3"
## [1] "PGR_5bp_10bp_1"
## [1] "NR1D1_10bp_10bp_2"
## [1] "RBPJ_TF-seq_NA_10bp_mCMV_NA"
## [1] "NR1D1_neg_10bp_21bp_2"
## [1] "FOS::JUN_promega_long_NA_10bp_mCMV_NA"
## [1] "STAT6_TF-seq_NA_10bp_mCMV_NA"
## [1] "FOSL1_neg_5bp_21bp_1"
## [1] "NR4A1_neg_10bp_21bp_3"
## [1] "SOX2_neg_10bp_10bp_2"
## [1] "RFX1_neg_5bp_21bp_2"
## [1] "MTF1_neg_10bp_21bp_2"
## [1] "NFIA_10bp_10bp_1"
## [1] "ESR1_neg_10bp_21bp_2"
## [1] "RORA_neg_10bp_21bp_1"
## [1] "NR1D1_10bp_10bp_3"
## [1] "TFAP2A_10bp_21bp_2"
## [1] "NR1I2_neg_5bp_21bp_3"
## [1] "THRB_5bp_21bp_3"
## [1] "HNF4A_10bp_10bp_2"
## [1] "MAF::NFE2_10bp_21bp_2"
## [1] "E2F1_neg_10bp_21bp_3"
## [1] "MEF2A_5bp_10bp_3"
## [1] "RARA:RXRA_neg_10bp_21bp_2"
## [1] "NR4A2::RXRA_neg_5bp_21bp_2"
## [1] "ONECUT1_neg_5bp_21bp_3"
## [1] "RORA_neg_5bp_10bp_2"
## [1] "MTF1_10bp_10bp_1"
## [1] "NR1H2_neg_5bp_21bp_3"
## [1] "NR1I3_5bp_10bp_2"
## [1] "SOX2_neg_5bp_21bp_3"
## [1] "NR3C2_5bp_21bp_1"
## [1] "HSF1_neg_5bp_10bp_1"
## [1] "REL_neg_10bp_10bp_2"
## [1] "SMAD2::SMAD3::SMAD4_promega_long_NA_10bp_mCMV_NA"
## [1] "PGR_5bp_21bp_2"
## [1] "FOXO1_10bp_10bp_2"
## [1] "NFKB1_promega_NA_10bp_mCMV_NA"
## [1] "SRF_neg_5bp_10bp_1"
## [1] "GLI1_TF-seq_NA_21bp_mCMV_NA"
## [1] "GATA1_5bp_21bp_3"
## [1] "NR1H2_neg_5bp_10bp_2"
## [1] "NR2E3_neg_5bp_10bp_3"
## [1] "AHR::ARNT_TF-seq_NA_10bp_mCMV_NA"
## [1] "VDR::RXRA_TF-seq_NA_21bp_mCMV_NA"
## [1] "NR3C2_5bp_10bp_1"
## [1] "THRA_10bp_10bp_3"
## [1] "RORA_10bp_21bp_2"
## [1] "CEBPB_5bp_21bp_3"
## [1] "HSF1_neg_10bp_21bp_3"
## [1] "THRB_neg_5bp_10bp_1"
## [1] "FOSL1_5bp_21bp_3"
## [1] "NR4A2::RXRA_10bp_21bp_2"
## [1] "ETS1_romanov_NA_10bp_mCMV_NA"
## [1] "TFAP2A_romanov_NA_10bp_mCMV_NA"
## [1] "POU2F1_neg_10bp_21bp_3"
## [1] "SOX2_5bp_10bp_3"
## [1] "MTF1_5bp_10bp_2"
## [1] "RARA:RXRA_TF-seq_NA_10bp_mCMV_NA"
## [1] "NR4A1_neg_5bp_10bp_1"
## [1] "SRF_promega_NA_21bp_mCMV_NA"
## [1] "GRHL1_5bp_10bp_3"
## [1] "FOXO1_romanov_NA_21bp_mCMV_NA"
## [1] "RORA_5bp_21bp_3"
## [1] "ETS1_10bp_10bp_2"
## [1] "NR4A1_neg_5bp_21bp_2"
## [1] "POU5F1::SOX2_neg_5bp_21bp_3"
## [1] "THRA_5bp_21bp_1"
## [1] "NFAT5_promega_NA_10bp_mCMV_NA"
## [1] "WT1_5bp_10bp_2"
## [1] "NR3C2_neg_10bp_10bp_3"
## [1] "REL_10bp_10bp_2"
## [1] "GLI1_romanov_NA_21bp_mCMV_NA"
## [1] "PPARG::RXRA_neg_10bp_21bp_2"
## [1] "NR4A1_neg_10bp_10bp_3"
## [1] "RXRA_5bp_21bp_3"
## [1] "FOXO1_romanov_NA_10bp_mCMV_NA"
## [1] "ONECUT1_10bp_21bp_2"
## [1] "NR5A2_5bp_21bp_3"
## [1] "T_neg_5bp_21bp_3"
## [1] "RFX1_5bp_10bp_3"
## [1] "THRA_10bp_21bp_3"
## [1] "SOX2_5bp_21bp_3"
## [1] "RUNX2_neg_5bp_10bp_3"
## [1] "RORA_neg_5bp_21bp_3"
## [1] "RUNX2_neg_5bp_10bp_2"
## [1] "AR_neg_5bp_10bp_1"
## [1] "Myc_romanov_NA_10bp_mCMV_NA"
## [1] "MEF2A_5bp_21bp_3"
## [1] "RARA:RXRA_5bp_10bp_2"
## [1] "RARA:RXRA_neg_10bp_21bp_3"
## [1] "FOXO1_neg_10bp_10bp_1"
## [1] "VDR::RXRA_10bp_21bp_2"
## [1] "ESR1_neg_10bp_21bp_3"
## [1] "VDR::RXRA_neg_5bp_21bp_3"
## [1] "STAT1.49_TF-seq_NA_21bp_minP_NA"
## [1] "GATA3_TF-seq_NA_21bp_minP_NA"
## [1] "TP53_promega_NA_10bp_minP_NA"
## [1] "FOS::JUN_TF-seq_NA_21bp_minP_NA"
## [1] "NFYA_TF-seq_NA_21bp_minP_NA"
## [1] "GATA3_TF-seq_NA_10bp_minP_NA"
## [1] "STAT6_TF-seq_NA_10bp_minP_NA"
## [1] "ATF4_TF-seq_NA_21bp_minP_NA"
## [1] "CEBPB_TF-seq_NA_10bp_minP_NA"
## [1] "SRF_TF-seq_NA_10bp_minP_NA"
## [1] "HNF4A_TF-seq_NA_10bp_minP_NA"
## [1] "TCF7_romanov_NA_21bp_minP_NA"
## [1] "REL_TF-seq_NA_21bp_minP_NA"
## [1] "CREB1_promega_NA_10bp_minP_NA"
## [1] "NR1I3_romanov_NA_10bp_minP_NA"
## [1] "NFE2L2_romanov_NA_21bp_minP_NA"
## [1] "IRF3_promega_NA_21bp_minP_NA"
## [1] "XBP1_promega_NA_10bp_minP_NA"
## [1] "CEBPB_romanov_NA_21bp_minP_NA"
## [1] "CREB1_promega_long_NA_10bp_minP_NA"
## [1] "EGR1_romanov_NA_21bp_minP_NA"
## [1] "FOS::JUN_romanov_NA_21bp_minP_NA"
## [1] "ETS1_romanov_NA_10bp_minP_NA"
## [1] "SRE_promega_long_NA_10bp_minP_NA"
## [1] "ATF6_promega_NA_10bp_minP_NA"
## [1] "Myc_romanov_NA_21bp_minP_NA"
## [1] "ESR1_romanov_NA_10bp_minP_NA"
## [1] "STAT5_TF-seq_NA_10bp_minP_NA"
## [1] "SP1_TF-seq_NA_10bp_minP_NA"
## [1] "SP1_romanov_NA_21bp_minP_NA"
## [1] "STAT3_romanov_NA_10bp_minP_NA"
## [1] "NFKB1_promega_NA_10bp_minP_NA"
## [1] "SRF_promega_NA_10bp_minP_NA"
## [1] "FOS::JUN_romanov_NA_10bp_minP_NA"
## [1] "SP1_TF-seq_NA_21bp_minP_NA"
## [1] "STAT3_TF-seq_NA_21bp_minP_NA"
## [1] "NFKB1_romanov_NA_10bp_minP_NA"
## [1] "STAT1::STAT2_TF-seq_NA_21bp_minP_NA"
## [1] "AHR::ARNT_TF-seq_NA_10bp_minP_NA"
## [1] "STAT1_TF-seq_NA_21bp_minP_NA"
## [1] "RFX1_5bp_21bp_1"
## [1] "POU2F1_romanov_NA_21bp_minP_NA"
## [1] "HIF1A_promega_long_NA_10bp_minP_NA"
## [1] "PPARA::RXRA_romanov_NA_10bp_minP_NA"
## [1] "RORA_TF-seq_NA_10bp_minP_NA"
## [1] "MTF1_neg_5bp_21bp_1"
## [1] "PPARA::RXRA_romanov_NA_21bp_minP_NA"
## [1] "STAT5_promega_NA_10bp_minP_NA"
## [1] "TCF7_promega_long_NA_10bp_minP_NA"
## [1] "XBP1_promega_NA_21bp_minP_NA"
## [1] "ELK1_TF-seq_NA_21bp_minP_NA"
## [1] "GATA1_romanov_NA_10bp_minP_NA"
## [1] "NFIA_romanov_NA_10bp_minP_NA"
## [1] "NR1D1_10bp_21bp_3"
## [1] "SREBF1_TF-seq_NA_21bp_minP_NA"
## [1] "CEBPA_TF-seq_NA_10bp_minP_NA"
## [1] "POU5F1_neg_5bp_21bp_3"
## [1] "TFAP2A_romanov_NA_21bp_minP_NA"
## [1] "EGR1_romanov_NA_10bp_minP_NA"
## [1] "SMAD2::SMAD3::SMAD4_promega_long_NA_10bp_minP_NA"
## [1] "IRF3_romanov_NA_10bp_minP_NA"
## [1] "TFAP2A_romanov_NA_10bp_minP_NA"
## [1] "NFYA_TF-seq_NA_10bp_minP_NA"
## [1] "AHR::ARNT_romanov_NA_21bp_minP_NA"
## [1] "ATF4_TF-seq_NA_10bp_minP_NA"
## [1] "Myc_romanov_NA_10bp_minP_NA"
## [1] "FOS::JUN_promega_long_NA_10bp_minP_NA"
## [1] "CREL_TF-seq_NA_21bp_minP_NA"
## [1] "THRB_neg_10bp_21bp_1"
## [1] "GLI1_romanov_NA_21bp_minP_NA"
## [1] "NFE2_romanov_NA_21bp_minP_NA"
## [1] "SRE_promega_NA_10bp_minP_NA"
## [1] "STAT1::STAT2_promega_NA_10bp_minP_NA"
## [1] "TP53_promega_long_NA_10bp_minP_NA"
## [1] "TCF7_promega_NA_10bp_minP_NA"
## [1] "NFE2_romanov_NA_10bp_minP_NA"
## [1] "NFE2L2_TF-seq_NA_10bp_minP_NA"
## [1] "STAT4_TF-seq_NA_21bp_minP_NA"
## [1] "RORA_TF-seq_NA_21bp_minP_NA"
## [1] "NR3C2_romanov_NA_10bp_minP_NA"
## [1] "TFEB_TF-seq_NA_10bp_minP_NA"
## [1] "STAT1.50_TF-seq_NA_10bp_minP_NA"
## [1] "CEBPB_romanov_NA_10bp_minP_NA"
## [1] "XBP1_romanov_NA_21bp_minP_NA"
## [1] "FOS::JUN_promega_NA_21bp_minP_NA"
## [1] "STAT5_TF-seq_NA_21bp_minP_NA"
## [1] "SMAD2::SMAD3::SMAD4_TF-seq_NA_21bp_minP_NA"
## [1] "CREB1_TF-romanov_NA_21bp_minP_NA"
## [1] "NR1H2_romanov_NA_21bp_minP_NA"
## [1] "GLI1_TF-seq_NA_10bp_minP_NA"
## [1] "NFE2L2_TF-seq_NA_21bp_minP_NA"
## [1] "FOXO1_romanov_NA_10bp_minP_NA"
## [1] "ETS1_romanov_NA_21bp_minP_NA"
## [1] "ONECUT1_romanov_NA_21bp_minP_NA"
## [1] "TP53_promega_NA_21bp_minP_NA"
## [1] "VDR::RXRA_TF-seq_NA_10bp_minP_NA"
## [1] "CEBPA_TF-seq_NA_21bp_minP_NA"
## [1] "STAT3_TF-seq_NA_10bp_minP_NA"
## [1] "MAF::NFE2_TF-seq_NA_10bp_minP_NA"
## [1] "NR1I3_romanov_NA_21bp_minP_NA"
## [1] "NR1H2_romanov_NA_10bp_minP_NA"
## [1] "XBP1_TF-seq_NA_21bp_minP_NA"
## [1] "TCF7_TF-seq_NA_10bp_minP_NA"
## [1] "SREBP_romanov_NA_21bp_minP_NA"
## [1] "THRB_5bp_21bp_1"
## [1] "TCF7_TF-seq_NA_21bp_minP_NA"
## [1] "PPARG::PPARG_TF-seq_NA_10bp_minP_NA"
## [1] "E2F1_romanov_NA_10bp_minP_NA"
## [1] "NR3C1_TF-seq_NA_10bp_minP_NA"
## [1] "ELK1_romanov_NA_21bp_minP_NA"
## [1] "STAT4_TF-seq_NA_10bp_minP_NA"
## [1] "XBP1_promega_long_NA_10bp_minP_NA"
## [1] "STAT1::STAT2_promega_NA_21bp_minP_NA"
## [1] "TCF7_promega_NA_21bp_minP_NA"
## [1] "ATF6_TF-seq_NA_10bp_minP_NA"
## [1] "ELK1_romanov_NA_10bp_minP_NA"
## [1] "SP1_romanov_NA_10bp_minP_NA"
## [1] "XBP1_romanov_NA_10bp_minP_NA"
## [1] "STAT3_promega_NA_21bp_minP_NA"
## [1] "EGR1_TF-seq_NA_10bp_minP_NA"
## [1] "NFIA_romanov_NA_21bp_minP_NA"
## [1] "CREB1_TF-seq_NA_21bp_minP_NA"
## [1] "AHR::ARNT_romanov_NA_10bp_minP_NA"
## [1] "FOXO1_romanov_NA_21bp_minP_NA"
## [1] "FOS::JUN_promega_NA_10bp_minP_NA"
## [1] "NR1H4::RXRA_TF-seq_NA_21bp_minP_NA"
## [1] "MYBL2_romanov_NA_21bp_minP_NA"
## [1] "HIF1A_promega_NA_21bp_minP_NA"
## [1] "TP53_romanov_NA_10bp_minP_NA"
## [1] "PPARG::PPARG_TF-seq_NA_21bp_minP_NA"
## [1] "STAT1.49_TF-seq_NA_10bp_minP_NA"
## [1] "STAT1::STAT2_TF-seq_NA_10bp_minP_NA"
## [1] "NR3C2_romanov_NA_21bp_minP_NA"
## [1] "ONECUT1_romanov_NA_10bp_minP_NA"
## [1] "NR1H2_TF-seq_NA_21bp_minP_NA"
## [1] "PPARG::RXRA_2_TF-seq_NA_21bp_minP_NA"
## [1] "NR3C1_TF-seq_NA_21bp_minP_NA"
## [1] "ATF2_TF-seq_NA_10bp_minP_NA"
## [1] "MAF::NFE2_TF-seq_NA_21bp_minP_NA"
## [1] "PAX6_romanov_NA_21bp_minP_NA"
## [1] "NFKB1_promega_NA_21bp_minP_NA"
## [1] "STAT1_promega_long_NA_10bp_minP_NA"
## [1] "ATF6_promega_NA_21bp_minP_NA"
## [1] "NFAT5_promega_NA_10bp_minP_NA"
## [1] "RARA:RXRA_TF-seq_NA_10bp_minP_NA"
## [1] "NFE2L2_promega_NA_21bp_minP_NA"
## [1] "RARA_TF-seq_NA_10bp_minP_NA"
## [1] "NR1H4::RXRA_TF-seq_NA_10bp_minP_NA"
## [1] "CREL_TF-seq_NA_10bp_minP_NA"
## [1] "SRE_promega_NA_21bp_minP_NA"
## [1] "AHR::ARNT_TF-seq_NA_21bp_minP_NA"
## [1] "CLOCK_TF-seq_NA_21bp_minP_NA"
## [1] "MTF1_promega_NA_21bp_minP_NA"
## [1] "NFKB1_TF-seq_NA_21bp_minP_NA"
## [1] "E2F1_romanov_NA_21bp_minP_NA"
## [1] "ELK1_TF-seq_NA_10bp_minP_NA"
## [1] "NFKB1_romanov_NA_21bp_minP_NA"
## [1] "IRF3_romanov_NA_21bp_minP_NA"
## [1] "NFKB1_TF-seq_NA_10bp_minP_NA"
## [1] "RUNX2_TF-seq_NA_10bp_minP_NA"
## [1] "STAT5_promega_long_NA_10bp_minP_NA"
## [1] "RARA:RXRA_TF-seq_NA_21bp_minP_NA"
## [1] "EGR1_TF-seq_NA_21bp_minP_NA"
## [1] "FOXA1_romanov_NA_10bp_minP_NA"
## [1] "CEBPB_TF-seq_NA_21bp_minP_NA"
## [1] "RARA_TF-seq_NA_21bp_minP_NA"
## [1] "HSF1_romanov_NA_21bp_minP_NA"
## [1] "NFE2L2_promega_long_NA_10bp_minP_NA"
## [1] "SREBP_romanov_NA_10bp_minP_NA"
## [1] "NFE2L2_promega_NA_10bp_minP_NA"
## [1] "NR3C2_5bp_21bp_2"
## [1] "SRF_promega_long_NA_10bp_minP_NA"
## [1] "STAT3_promega_NA_10bp_minP_NA"
## [1] "STAT5_promega_NA_21bp_minP_NA"
## [1] "FOS::JUN_TF-seq_NA_10bp_minP_NA"
## [1] "NR1H2_TF-seq_NA_10bp_minP_NA"
## [1] "TCF7_romanov_NA_10bp_minP_NA"
## [1] "HIF1A_promega_NA_10bp_minP_NA"
## [1] "ATF6_promega_long_NA_10bp_minP_NA"
## [1] "CREB1_TF-romanov_NA_10bp_minP_NA"
## [1] "IRF3_TF-seq_NA_10bp_minP_NA"
## [1] "IRF3_TF-seq_NA_21bp_minP_NA"
## [1] "STAT3_romanov_NA_21bp_minP_NA"
## [1] "MYBL2_romanov_NA_10bp_minP_NA"
## [1] "NFAT5_promega_long_NA_10bp_minP_NA"
## [1] "IRF1_TF-seq_NA_10bp_minP_NA"
## [1] "REL_TF-seq_NA_10bp_minP_NA"
## [1] "POU2F1_romanov_NA_10bp_minP_NA"
## [1] "RBPJ_TF-seq_NA_10bp_minP_NA"
## [1] "TEAD1_TF-seq_NA_10bp_minP_NA"
## [1] "CREB1_promega_NA_21bp_minP_NA"
## [1] "IRF1_TF-seq_NA_21bp_minP_NA"
## [1] "SRF_TF-seq_NA_21bp_minP_NA"
## [1] "STAT1_TF-seq_NA_10bp_minP_NA"
## [1] "ATF6_TF-seq_NA_21bp_minP_NA"
## [1] "NR3C1_romanov_NA_10bp_minP_NA"
## [1] "SRF_promega_NA_21bp_minP_NA"
## [1] "ESR1_romanov_NA_21bp_minP_NA"
## [1] "SMAD2::SMAD3::SMAD4_romanov_NA_10bp_minP_NA"
## [1] "GLI1_TF-seq_NA_21bp_minP_NA"
## [1] "SREBF1_TF-seq_NA_10bp_minP_NA"
## [1] "STAT3_promega_long_NA_10bp_minP_NA"
## [1] "THRB_10bp_21bp_3"
## [1] "ATF2_TF-seq_NA_21bp_minP_NA"
## [1] "SMAD2::SMAD3::SMAD4_promega_NA_21bp_minP_NA"
## [1] "RBPJ_TF-seq_NA_21bp_minP_NA"
## [1] "GATA1_romanov_NA_21bp_minP_NA"
## [1] "NR3C1_romanov_NA_21bp_minP_NA"
## [1] "HSF1_promega_long_NA_10bp_minP_NA"
## [1] "XBP1_TF-seq_NA_10bp_minP_NA"
## [1] "NFKB1_promega_long_NA_10bp_minP_NA"
## [1] "CREB1_TF-seq_NA_10bp_minP_NA"
## [1] "PPARG::RXRA_2_TF-seq_NA_10bp_minP_NA"
## [1] "SOX2_romanov_NA_10bp_minP_NA"
## [1] "PAX6_romanov_NA_10bp_minP_NA"
## [1] "VDR::RXRA_TF-seq_NA_21bp_minP_NA"
## [1] "TP53_romanov_NA_21bp_minP_NA"
## [1] "TFEB_TF-seq_NA_21bp_minP_NA"
## [1] "HNF4A_TF-seq_NA_21bp_minP_NA"
## [1] "MTF1_promega_NA_10bp_minP_NA"
## [1] "FOXO1_TF-seq_NA_10bp_minP_NA"
## [1] "NFE2L2_romanov_NA_10bp_minP_NA"
## [1] "STAT1.50_TF-seq_NA_21bp_minP_NA"
## [1] "SMAD2::SMAD3::SMAD4_TF-seq_NA_10bp_minP_NA"
## [1] "STAT6_TF-seq_NA_21bp_minP_NA"
## [1] "CLOCK_TF-seq_NA_10bp_minP_NA"
## [1] "RORA_neg_10bp_21bp_3"
## [1] "FOXA1_romanov_NA_21bp_minP_NA"
## [1] "HSF1_promega_NA_21bp_minP_NA"
## [1] "HSF1_promega_NA_10bp_minP_NA"
## [1] "FOXO1_TF-seq_NA_21bp_minP_NA"
## [1] "GLI1_romanov_NA_10bp_minP_NA"
## [1] "IRF3_promega_NA_10bp_minP_NA"
## [1] "RORA_neg_10bp_10bp_3"
## [1] "NFAT5_promega_NA_21bp_mCMV_NA"
## [1] "ATF2_TF-seq_NA_21bp_mCMV_NA"
## [1] "FOXO1_TF-seq_NA_21bp_mCMV_NA"
## [1] "SOX2_10bp_21bp_2"
## [1] "RUNX2_TF-seq_NA_21bp_minP_NA"
## [1] "PPARG::RXRA_TF-seq_NA_10bp_minP_NA"
## [1] "SOX2_romanov_NA_21bp_minP_NA"
## [1] "NFAT5_promega_NA_21bp_minP_NA"
## [1] "SMAD2::SMAD3::SMAD4_promega_NA_10bp_minP_NA"
## [1] "TEAD1_TF-seq_NA_21bp_minP_NA"
## [1] "HSF1_romanov_NA_10bp_minP_NA"
## [1] "PPARG::RXRA_TF-seq_NA_21bp_minP_NA"
## [1] "SMAD2::SMAD3::SMAD4_romanov_NA_21bp_minP_NA"pval_df <- data.frame(bind_rows(pval_list))
rownames(pval_df) <- names(pval_list)
pval_df <- pval_df %>%
rownames_to_column("reporter_id2") %>%
pivot_longer(-reporter_id2, names_to = "id", values_to = "pval") %>%
mutate(id = gsub("1.2", "1+2", id)) %>%
na.omit()
bc_df_cDNA_filt <- merge(bc_df_cDNA_filt, pval_df, by = c("reporter_id2", "id"), all = T)
bc_df_cDNA_filt <- bc_df_cDNA_filt[!is.na(bc_df_cDNA_filt$sample_id),]
bc_df_cDNA_filt <- bc_df_cDNA_filt %>%
mutate(pval_adj = p.adjust(p = pval))
## Compute activity relative to NFYA reporter
bc_df_cDNA_filt_nfya <- bc_df_cDNA_filt %>%
dplyr::select(sample_id, activity, reporter_id, tf, promoter) %>%
filter(str_detect(tf, "NFYA"), promoter == "minP") %>%
unique() %>%
mutate(activity = ave(activity, sample_id, FUN = function(x) mean(x))) %>%
dplyr::select(-reporter_id) %>%
unique() %>%
dplyr::select("nfya_activity" = activity, sample_id) %>%
unique()
bc_df_cDNA_filt <- merge(bc_df_cDNA_filt, bc_df_cDNA_filt_nfya, by = "sample_id")
bc_df_cDNA_filt <- bc_df_cDNA_filt %>%
mutate(nfya_activity = activity / nfya_activity)
# Compute mean of technical replicates
bc_df_cDNA_filt$mean_activity_sample_minP <- ave(bc_df_cDNA_filt$minP_activity, bc_df_cDNA_filt$reporter_id,
bc_df_cDNA_filt$sample_id, FUN =
function(x) mean(x, na.rm = T))
bc_df_cDNA_filt$mean_activity_sample_nfya <- ave(bc_df_cDNA_filt$nfya_activity, bc_df_cDNA_filt$reporter_id,
bc_df_cDNA_filt$sample_id, FUN =
function(x) mean(x, na.rm = T))
bc_df_cDNA_filt$mean_activity_sample <- ave(bc_df_cDNA_filt$activity, bc_df_cDNA_filt$reporter_id,
bc_df_cDNA_filt$sample_id, FUN =
function(x) mean(x, na.rm = T))
# Compute activity relative to mutated motif
bc_df_cDNA_filt_mutated <- bc_df_cDNA_filt %>%
filter(neg_ctrls == "Yes") %>%
dplyr::select(reporter_id, 'mutated_activity' = mean_activity_sample, sample_id) %>%
unique() %>%
mutate(reporter_id = gsub("_neg", "", reporter_id)) %>%
filter(str_detect(reporter_id, "MAFA_", negate = T), str_detect(reporter_id, "NR2E3_", negate = T), str_detect(reporter_id, "^T_", negate = T))
bc_df_cDNA_filt <- merge(bc_df_cDNA_filt, bc_df_cDNA_filt_mutated, by = c("reporter_id", "sample_id"), all = T)
bc_df_cDNA_filt <- bc_df_cDNA_filt[!is.na(bc_df_cDNA_filt$barcode),]
bc_df_cDNA_filt <- bc_df_cDNA_filt %>%
mutate(mean_activity_sample_neg = mean_activity / mutated_activity)
## Statistical significance of reporters vs negative control
bc_df_cDNA_filt <- bc_df_cDNA_filt %>%
mutate(reporter_id2 = gsub("_neg", "", reporter_id))
pval_list <- list()
for (i in unique(bc_df_cDNA_filt$reporter_id2)) {
print(i)
test_x <- bc_df_cDNA_filt[bc_df_cDNA_filt$reporter_id2 == i,]
ids <- intersect(unique(bc_df_cDNA_filt$id[bc_df_cDNA_filt$reporter_id2 == i & bc_df_cDNA_filt$neg_ctrls == "Yes"]),
unique(bc_df_cDNA_filt$id[bc_df_cDNA_filt$reporter_id2 == i & bc_df_cDNA_filt$neg_ctrls == "No"]))
pval_list[[i]] <- lapply(ids, function(x) t.test(test_x$activity[test_x$id == x & test_x$neg_ctrls == "No"],
test_x$activity[test_x$id == x & test_x$neg_ctrls == "Yes"])$p.value)
names(pval_list[[i]]) <- ids
}## [1] "AHR::ARNT_10bp_10bp_mCMV_1"
## [1] "AHR::ARNT_10bp_10bp_mCMV_2"
## [1] "AHR::ARNT_10bp_10bp_mCMV_3"
## [1] "AHR::ARNT_10bp_10bp_minP_1"
## [1] "AHR::ARNT_10bp_10bp_minP_2"
## [1] "AHR::ARNT_10bp_10bp_minP_3"
## [1] "AHR::ARNT_10bp_21bp_Random_1"
## [1] "AHR::ARNT_10bp_21bp_mCMV_1"
## [1] "AHR::ARNT_10bp_21bp_mCMV_2"
## [1] "AHR::ARNT_10bp_21bp_mCMV_3"
## [1] "AHR::ARNT_10bp_21bp_minP_1"
## [1] "AHR::ARNT_10bp_21bp_minP_2"
## [1] "AHR::ARNT_10bp_21bp_minP_3"
## [1] "AHR::ARNT_5bp_10bp_mCMV_1"
## [1] "AHR::ARNT_5bp_10bp_mCMV_2"
## [1] "AHR::ARNT_5bp_10bp_mCMV_3"
## [1] "AHR::ARNT_5bp_10bp_minP_1"
## [1] "AHR::ARNT_5bp_10bp_minP_2"
## [1] "AHR::ARNT_5bp_10bp_minP_3"
## [1] "AHR::ARNT_5bp_21bp_mCMV_1"
## [1] "AHR::ARNT_5bp_21bp_mCMV_2"
## [1] "AHR::ARNT_5bp_21bp_mCMV_3"
## [1] "AHR::ARNT_5bp_21bp_minP_1"
## [1] "AHR::ARNT_5bp_21bp_minP_2"
## [1] "AHR::ARNT_5bp_21bp_minP_3"
## [1] "AHR::ARNT_TF-seq_NA_10bp_mCMV_NA"
## [1] "AHR::ARNT_TF-seq_NA_10bp_minP_NA"
## [1] "AHR::ARNT_TF-seq_NA_21bp_mCMV_NA"
## [1] "AHR::ARNT_TF-seq_NA_21bp_minP_NA"
## [1] "AHR::ARNT_romanov_NA_10bp_mCMV_NA"
## [1] "AHR::ARNT_romanov_NA_10bp_minP_NA"
## [1] "AHR::ARNT_romanov_NA_21bp_mCMV_NA"
## [1] "AHR::ARNT_romanov_NA_21bp_minP_NA"
## [1] "AR_10bp_10bp_mCMV_1"
## [1] "AR_10bp_10bp_mCMV_2"
## [1] "AR_10bp_10bp_mCMV_3"
## [1] "AR_10bp_10bp_minP_1"
## [1] "AR_10bp_10bp_minP_2"
## [1] "AR_10bp_10bp_minP_3"
## [1] "AR_10bp_21bp_Random_1"
## [1] "AR_10bp_21bp_mCMV_1"
## [1] "AR_10bp_21bp_mCMV_2"
## [1] "AR_10bp_21bp_mCMV_3"
## [1] "AR_10bp_21bp_minP_1"
## [1] "AR_10bp_21bp_minP_2"
## [1] "AR_10bp_21bp_minP_3"
## [1] "AR_5bp_10bp_mCMV_1"
## [1] "AR_5bp_10bp_mCMV_2"
## [1] "AR_5bp_10bp_mCMV_3"
## [1] "AR_5bp_10bp_minP_1"
## [1] "AR_5bp_10bp_minP_2"
## [1] "AR_5bp_10bp_minP_3"
## [1] "AR_5bp_21bp_mCMV_1"
## [1] "AR_5bp_21bp_mCMV_2"
## [1] "AR_5bp_21bp_mCMV_3"
## [1] "AR_5bp_21bp_minP_1"
## [1] "AR_5bp_21bp_minP_2"
## [1] "AR_5bp_21bp_minP_3"
## [1] "ATF2_TF-seq_NA_10bp_mCMV_NA"
## [1] "ATF2_TF-seq_NA_10bp_minP_NA"
## [1] "ATF2_TF-seq_NA_21bp_mCMV_NA"
## [1] "ATF2_TF-seq_NA_21bp_minP_NA"
## [1] "ATF4_TF-seq_NA_10bp_mCMV_NA"
## [1] "ATF4_TF-seq_NA_10bp_minP_NA"
## [1] "ATF4_TF-seq_NA_21bp_mCMV_NA"
## [1] "ATF4_TF-seq_NA_21bp_minP_NA"
## [1] "ATF6_TF-seq_NA_10bp_mCMV_NA"
## [1] "ATF6_TF-seq_NA_10bp_minP_NA"
## [1] "ATF6_TF-seq_NA_21bp_mCMV_NA"
## [1] "ATF6_TF-seq_NA_21bp_minP_NA"
## [1] "ATF6_promega_NA_10bp_mCMV_NA"
## [1] "ATF6_promega_NA_10bp_minP_NA"
## [1] "ATF6_promega_NA_21bp_mCMV_NA"
## [1] "ATF6_promega_NA_21bp_minP_NA"
## [1] "ATF6_promega_long_NA_10bp_mCMV_NA"
## [1] "ATF6_promega_long_NA_10bp_minP_NA"
## [1] "CEBPA_TF-seq_NA_10bp_mCMV_NA"
## [1] "CEBPA_TF-seq_NA_10bp_minP_NA"
## [1] "CEBPA_TF-seq_NA_21bp_mCMV_NA"
## [1] "CEBPA_TF-seq_NA_21bp_minP_NA"
## [1] "CEBPB_10bp_10bp_mCMV_1"
## [1] "CEBPB_10bp_10bp_mCMV_2"
## [1] "CEBPB_10bp_10bp_mCMV_3"
## [1] "CEBPB_10bp_10bp_minP_1"
## [1] "CEBPB_10bp_10bp_minP_2"
## [1] "CEBPB_10bp_10bp_minP_3"
## [1] "CEBPB_10bp_21bp_Random_1"
## [1] "CEBPB_10bp_21bp_mCMV_1"
## [1] "CEBPB_10bp_21bp_mCMV_2"
## [1] "CEBPB_10bp_21bp_mCMV_3"
## [1] "CEBPB_10bp_21bp_minP_1"
## [1] "CEBPB_10bp_21bp_minP_2"
## [1] "CEBPB_10bp_21bp_minP_3"
## [1] "CEBPB_5bp_10bp_mCMV_1"
## [1] "CEBPB_5bp_10bp_mCMV_2"
## [1] "CEBPB_5bp_10bp_mCMV_3"
## [1] "CEBPB_5bp_10bp_minP_1"
## [1] "CEBPB_5bp_10bp_minP_2"
## [1] "CEBPB_5bp_10bp_minP_3"
## [1] "CEBPB_5bp_21bp_mCMV_1"
## [1] "CEBPB_5bp_21bp_mCMV_2"
## [1] "CEBPB_5bp_21bp_mCMV_3"
## [1] "CEBPB_5bp_21bp_minP_1"
## [1] "CEBPB_5bp_21bp_minP_2"
## [1] "CEBPB_5bp_21bp_minP_3"
## [1] "CEBPB_TF-seq_NA_10bp_mCMV_NA"
## [1] "CEBPB_TF-seq_NA_10bp_minP_NA"
## [1] "CEBPB_TF-seq_NA_21bp_mCMV_NA"
## [1] "CEBPB_TF-seq_NA_21bp_minP_NA"
## [1] "CEBPB_romanov_NA_10bp_mCMV_NA"
## [1] "CEBPB_romanov_NA_10bp_minP_NA"
## [1] "CEBPB_romanov_NA_21bp_mCMV_NA"
## [1] "CEBPB_romanov_NA_21bp_minP_NA"
## [1] "CLOCK_TF-seq_NA_10bp_mCMV_NA"
## [1] "CLOCK_TF-seq_NA_10bp_minP_NA"
## [1] "CLOCK_TF-seq_NA_21bp_mCMV_NA"
## [1] "CLOCK_TF-seq_NA_21bp_minP_NA"
## [1] "CREB1_10bp_10bp_hBGm_1"
## [1] "CREB1_10bp_10bp_hBGm_2"
## [1] "CREB1_10bp_10bp_hBGm_3"
## [1] "CREB1_10bp_10bp_mCMV_1"
## [1] "CREB1_10bp_10bp_mCMV_2"
## [1] "CREB1_10bp_10bp_mCMV_3"
## [1] "CREB1_10bp_10bp_minP_1"
## [1] "CREB1_10bp_10bp_minP_2"
## [1] "CREB1_10bp_10bp_minP_3"
## [1] "CREB1_10bp_21bp_Random_1"
## [1] "CREB1_10bp_21bp_hBGm_1"
## [1] "CREB1_10bp_21bp_hBGm_2"
## [1] "CREB1_10bp_21bp_hBGm_3"
## [1] "CREB1_10bp_21bp_mCMV_1"
## [1] "CREB1_10bp_21bp_mCMV_2"
## [1] "CREB1_10bp_21bp_mCMV_3"
## [1] "CREB1_10bp_21bp_minP_1"
## [1] "CREB1_10bp_21bp_minP_2"
## [1] "CREB1_10bp_21bp_minP_3"
## [1] "CREB1_5bp_10bp_hBGm_1"
## [1] "CREB1_5bp_10bp_hBGm_2"
## [1] "CREB1_5bp_10bp_hBGm_3"
## [1] "CREB1_5bp_10bp_mCMV_1"
## [1] "CREB1_5bp_10bp_mCMV_2"
## [1] "CREB1_5bp_10bp_mCMV_3"
## [1] "CREB1_5bp_10bp_minP_1"
## [1] "CREB1_5bp_10bp_minP_2"
## [1] "CREB1_5bp_10bp_minP_3"
## [1] "CREB1_5bp_21bp_hBGm_1"
## [1] "CREB1_5bp_21bp_hBGm_2"
## [1] "CREB1_5bp_21bp_hBGm_3"
## [1] "CREB1_5bp_21bp_mCMV_1"
## [1] "CREB1_5bp_21bp_mCMV_2"
## [1] "CREB1_5bp_21bp_mCMV_3"
## [1] "CREB1_5bp_21bp_minP_1"
## [1] "CREB1_5bp_21bp_minP_2"
## [1] "CREB1_5bp_21bp_minP_3"
## [1] "CREB1_TF-romanov_NA_10bp_mCMV_NA"
## [1] "CREB1_TF-romanov_NA_10bp_minP_NA"
## [1] "CREB1_TF-romanov_NA_21bp_mCMV_NA"
## [1] "CREB1_TF-romanov_NA_21bp_minP_NA"
## [1] "CREB1_TF-seq_NA_10bp_mCMV_NA"
## [1] "CREB1_TF-seq_NA_10bp_minP_NA"
## [1] "CREB1_TF-seq_NA_21bp_mCMV_NA"
## [1] "CREB1_TF-seq_NA_21bp_minP_NA"
## [1] "CREB1_promega_NA_10bp_mCMV_NA"
## [1] "CREB1_promega_NA_10bp_minP_NA"
## [1] "CREB1_promega_NA_21bp_mCMV_NA"
## [1] "CREB1_promega_NA_21bp_minP_NA"
## [1] "CREB1_promega_long_NA_10bp_mCMV_NA"
## [1] "CREB1_promega_long_NA_10bp_minP_NA"
## [1] "CREL_TF-seq_NA_10bp_mCMV_NA"
## [1] "CREL_TF-seq_NA_10bp_minP_NA"
## [1] "CREL_TF-seq_NA_21bp_mCMV_NA"
## [1] "CREL_TF-seq_NA_21bp_minP_NA"
## [1] "E2F1_10bp_10bp_mCMV_1"
## [1] "E2F1_10bp_10bp_mCMV_2"
## [1] "E2F1_10bp_10bp_mCMV_3"
## [1] "E2F1_10bp_10bp_minP_1"
## [1] "E2F1_10bp_10bp_minP_2"
## [1] "E2F1_10bp_10bp_minP_3"
## [1] "E2F1_10bp_21bp_Random_1"
## [1] "E2F1_10bp_21bp_mCMV_1"
## [1] "E2F1_10bp_21bp_mCMV_2"
## [1] "E2F1_10bp_21bp_mCMV_3"
## [1] "E2F1_10bp_21bp_minP_1"
## [1] "E2F1_10bp_21bp_minP_2"
## [1] "E2F1_10bp_21bp_minP_3"
## [1] "E2F1_5bp_10bp_mCMV_1"
## [1] "E2F1_5bp_10bp_mCMV_2"
## [1] "E2F1_5bp_10bp_mCMV_3"
## [1] "E2F1_5bp_10bp_minP_1"
## [1] "E2F1_5bp_10bp_minP_2"
## [1] "E2F1_5bp_10bp_minP_3"
## [1] "E2F1_5bp_21bp_mCMV_1"
## [1] "E2F1_5bp_21bp_mCMV_2"
## [1] "E2F1_5bp_21bp_mCMV_3"
## [1] "E2F1_5bp_21bp_minP_1"
## [1] "E2F1_5bp_21bp_minP_2"
## [1] "E2F1_5bp_21bp_minP_3"
## [1] "E2F1_romanov_NA_10bp_mCMV_NA"
## [1] "E2F1_romanov_NA_10bp_minP_NA"
## [1] "E2F1_romanov_NA_21bp_mCMV_NA"
## [1] "E2F1_romanov_NA_21bp_minP_NA"
## [1] "EGR1_10bp_10bp_mCMV_1"
## [1] "EGR1_10bp_10bp_mCMV_2"
## [1] "EGR1_10bp_10bp_mCMV_3"
## [1] "EGR1_10bp_10bp_minP_1"
## [1] "EGR1_10bp_10bp_minP_2"
## [1] "EGR1_10bp_10bp_minP_3"
## [1] "EGR1_10bp_21bp_Random_1"
## [1] "EGR1_10bp_21bp_mCMV_1"
## [1] "EGR1_10bp_21bp_mCMV_2"
## [1] "EGR1_10bp_21bp_mCMV_3"
## [1] "EGR1_10bp_21bp_minP_1"
## [1] "EGR1_10bp_21bp_minP_2"
## [1] "EGR1_10bp_21bp_minP_3"
## [1] "EGR1_5bp_10bp_mCMV_1"
## [1] "EGR1_5bp_10bp_mCMV_2"
## [1] "EGR1_5bp_10bp_mCMV_3"
## [1] "EGR1_5bp_10bp_minP_1"
## [1] "EGR1_5bp_10bp_minP_2"
## [1] "EGR1_5bp_10bp_minP_3"
## [1] "EGR1_5bp_21bp_mCMV_1"
## [1] "EGR1_5bp_21bp_mCMV_2"
## [1] "EGR1_5bp_21bp_mCMV_3"
## [1] "EGR1_5bp_21bp_minP_1"
## [1] "EGR1_5bp_21bp_minP_2"
## [1] "EGR1_5bp_21bp_minP_3"
## [1] "EGR1_TF-seq_NA_10bp_mCMV_NA"
## [1] "EGR1_TF-seq_NA_10bp_minP_NA"
## [1] "EGR1_TF-seq_NA_21bp_mCMV_NA"
## [1] "EGR1_TF-seq_NA_21bp_minP_NA"
## [1] "EGR1_romanov_NA_10bp_mCMV_NA"
## [1] "EGR1_romanov_NA_10bp_minP_NA"
## [1] "EGR1_romanov_NA_21bp_mCMV_NA"
## [1] "EGR1_romanov_NA_21bp_minP_NA"
## [1] "ELK1_10bp_10bp_hBGm_1"
## [1] "ELK1_10bp_10bp_hBGm_2"
## [1] "ELK1_10bp_10bp_hBGm_3"
## [1] "ELK1_10bp_10bp_mCMV_1"
## [1] "ELK1_10bp_10bp_mCMV_2"
## [1] "ELK1_10bp_10bp_mCMV_3"
## [1] "ELK1_10bp_10bp_minP_1"
## [1] "ELK1_10bp_10bp_minP_2"
## [1] "ELK1_10bp_10bp_minP_3"
## [1] "ELK1_10bp_21bp_Random_1"
## [1] "ELK1_10bp_21bp_hBGm_1"
## [1] "ELK1_10bp_21bp_hBGm_2"
## [1] "ELK1_10bp_21bp_hBGm_3"
## [1] "ELK1_10bp_21bp_mCMV_1"
## [1] "ELK1_10bp_21bp_mCMV_2"
## [1] "ELK1_10bp_21bp_mCMV_3"
## [1] "ELK1_10bp_21bp_minP_1"
## [1] "ELK1_10bp_21bp_minP_2"
## [1] "ELK1_10bp_21bp_minP_3"
## [1] "ELK1_5bp_10bp_hBGm_1"
## [1] "ELK1_5bp_10bp_hBGm_2"
## [1] "ELK1_5bp_10bp_hBGm_3"
## [1] "ELK1_5bp_10bp_mCMV_1"
## [1] "ELK1_5bp_10bp_mCMV_2"
## [1] "ELK1_5bp_10bp_mCMV_3"
## [1] "ELK1_5bp_10bp_minP_1"
## [1] "ELK1_5bp_10bp_minP_2"
## [1] "ELK1_5bp_10bp_minP_3"
## [1] "ELK1_5bp_21bp_hBGm_1"
## [1] "ELK1_5bp_21bp_hBGm_2"
## [1] "ELK1_5bp_21bp_hBGm_3"
## [1] "ELK1_5bp_21bp_mCMV_1"
## [1] "ELK1_5bp_21bp_mCMV_2"
## [1] "ELK1_5bp_21bp_mCMV_3"
## [1] "ELK1_5bp_21bp_minP_1"
## [1] "ELK1_5bp_21bp_minP_2"
## [1] "ELK1_5bp_21bp_minP_3"
## [1] "ELK1_TF-seq_NA_10bp_mCMV_NA"
## [1] "ELK1_TF-seq_NA_10bp_minP_NA"
## [1] "ELK1_TF-seq_NA_21bp_mCMV_NA"
## [1] "ELK1_TF-seq_NA_21bp_minP_NA"
## [1] "ELK1_romanov_NA_10bp_mCMV_NA"
## [1] "ELK1_romanov_NA_10bp_minP_NA"
## [1] "ELK1_romanov_NA_21bp_mCMV_NA"
## [1] "ELK1_romanov_NA_21bp_minP_NA"
## [1] "ESR1_10bp_10bp_mCMV_1"
## [1] "ESR1_10bp_10bp_mCMV_2"
## [1] "ESR1_10bp_10bp_mCMV_3"
## [1] "ESR1_10bp_10bp_minP_1"
## [1] "ESR1_10bp_10bp_minP_2"
## [1] "ESR1_10bp_10bp_minP_3"
## [1] "ESR1_10bp_21bp_Random_1"
## [1] "ESR1_10bp_21bp_mCMV_1"
## [1] "ESR1_10bp_21bp_mCMV_2"
## [1] "ESR1_10bp_21bp_mCMV_3"
## [1] "ESR1_10bp_21bp_minP_1"
## [1] "ESR1_10bp_21bp_minP_2"
## [1] "ESR1_10bp_21bp_minP_3"
## [1] "ESR1_5bp_10bp_mCMV_1"
## [1] "ESR1_5bp_10bp_mCMV_2"
## [1] "ESR1_5bp_10bp_mCMV_3"
## [1] "ESR1_5bp_10bp_minP_1"
## [1] "ESR1_5bp_10bp_minP_2"
## [1] "ESR1_5bp_10bp_minP_3"
## [1] "ESR1_5bp_21bp_mCMV_1"
## [1] "ESR1_5bp_21bp_mCMV_2"
## [1] "ESR1_5bp_21bp_mCMV_3"
## [1] "ESR1_5bp_21bp_minP_1"
## [1] "ESR1_5bp_21bp_minP_2"
## [1] "ESR1_5bp_21bp_minP_3"
## [1] "ESR1_romanov_NA_10bp_mCMV_NA"
## [1] "ESR1_romanov_NA_10bp_minP_NA"
## [1] "ESR1_romanov_NA_21bp_mCMV_NA"
## [1] "ESR1_romanov_NA_21bp_minP_NA"
## [1] "ESRRB_10bp_10bp_hBGm_1"
## [1] "ESRRB_10bp_10bp_hBGm_2"
## [1] "ESRRB_10bp_10bp_hBGm_3"
## [1] "ESRRB_10bp_10bp_mCMV_1"
## [1] "ESRRB_10bp_10bp_mCMV_2"
## [1] "ESRRB_10bp_10bp_mCMV_3"
## [1] "ESRRB_10bp_10bp_minP_1"
## [1] "ESRRB_10bp_10bp_minP_2"
## [1] "ESRRB_10bp_10bp_minP_3"
## [1] "ESRRB_10bp_21bp_Random_1"
## [1] "ESRRB_10bp_21bp_hBGm_1"
## [1] "ESRRB_10bp_21bp_hBGm_2"
## [1] "ESRRB_10bp_21bp_hBGm_3"
## [1] "ESRRB_10bp_21bp_mCMV_1"
## [1] "ESRRB_10bp_21bp_mCMV_2"
## [1] "ESRRB_10bp_21bp_mCMV_3"
## [1] "ESRRB_10bp_21bp_minP_1"
## [1] "ESRRB_10bp_21bp_minP_2"
## [1] "ESRRB_10bp_21bp_minP_3"
## [1] "ESRRB_5bp_10bp_hBGm_1"
## [1] "ESRRB_5bp_10bp_hBGm_2"
## [1] "ESRRB_5bp_10bp_hBGm_3"
## [1] "ESRRB_5bp_10bp_mCMV_1"
## [1] "ESRRB_5bp_10bp_mCMV_2"
## [1] "ESRRB_5bp_10bp_mCMV_3"
## [1] "ESRRB_5bp_10bp_minP_1"
## [1] "ESRRB_5bp_10bp_minP_2"
## [1] "ESRRB_5bp_10bp_minP_3"
## [1] "ESRRB_5bp_21bp_hBGm_1"
## [1] "ESRRB_5bp_21bp_hBGm_2"
## [1] "ESRRB_5bp_21bp_hBGm_3"
## [1] "ESRRB_5bp_21bp_mCMV_1"
## [1] "ESRRB_5bp_21bp_mCMV_2"
## [1] "ESRRB_5bp_21bp_mCMV_3"
## [1] "ESRRB_5bp_21bp_minP_1"
## [1] "ESRRB_5bp_21bp_minP_2"
## [1] "ESRRB_5bp_21bp_minP_3"
## [1] "ETS1_10bp_10bp_mCMV_1"
## [1] "ETS1_10bp_10bp_mCMV_2"
## [1] "ETS1_10bp_10bp_mCMV_3"
## [1] "ETS1_10bp_10bp_minP_1"
## [1] "ETS1_10bp_10bp_minP_2"
## [1] "ETS1_10bp_10bp_minP_3"
## [1] "ETS1_10bp_21bp_Random_1"
## [1] "ETS1_10bp_21bp_mCMV_1"
## [1] "ETS1_10bp_21bp_mCMV_2"
## [1] "ETS1_10bp_21bp_mCMV_3"
## [1] "ETS1_10bp_21bp_minP_1"
## [1] "ETS1_10bp_21bp_minP_2"
## [1] "ETS1_10bp_21bp_minP_3"
## [1] "ETS1_5bp_10bp_mCMV_1"
## [1] "ETS1_5bp_10bp_mCMV_2"
## [1] "ETS1_5bp_10bp_mCMV_3"
## [1] "ETS1_5bp_10bp_minP_1"
## [1] "ETS1_5bp_10bp_minP_2"
## [1] "ETS1_5bp_10bp_minP_3"
## [1] "ETS1_5bp_21bp_mCMV_1"
## [1] "ETS1_5bp_21bp_mCMV_2"
## [1] "ETS1_5bp_21bp_mCMV_3"
## [1] "ETS1_5bp_21bp_minP_1"
## [1] "ETS1_5bp_21bp_minP_2"
## [1] "ETS1_5bp_21bp_minP_3"
## [1] "ETS1_romanov_NA_10bp_mCMV_NA"
## [1] "ETS1_romanov_NA_10bp_minP_NA"
## [1] "ETS1_romanov_NA_21bp_mCMV_NA"
## [1] "ETS1_romanov_NA_21bp_minP_NA"
## [1] "FOS::JUN_10bp_10bp_mCMV_1"
## [1] "FOS::JUN_10bp_10bp_mCMV_2"
## [1] "FOS::JUN_10bp_10bp_mCMV_3"
## [1] "FOS::JUN_10bp_10bp_minP_1"
## [1] "FOS::JUN_10bp_10bp_minP_2"
## [1] "FOS::JUN_10bp_10bp_minP_3"
## [1] "FOS::JUN_10bp_21bp_Random_1"
## [1] "FOS::JUN_10bp_21bp_mCMV_1"
## [1] "FOS::JUN_10bp_21bp_mCMV_2"
## [1] "FOS::JUN_10bp_21bp_mCMV_3"
## [1] "FOS::JUN_10bp_21bp_minP_1"
## [1] "FOS::JUN_10bp_21bp_minP_2"
## [1] "FOS::JUN_10bp_21bp_minP_3"
## [1] "FOS::JUN_5bp_10bp_mCMV_1"
## [1] "FOS::JUN_5bp_10bp_mCMV_2"
## [1] "FOS::JUN_5bp_10bp_mCMV_3"
## [1] "FOS::JUN_5bp_10bp_minP_1"
## [1] "FOS::JUN_5bp_10bp_minP_2"
## [1] "FOS::JUN_5bp_10bp_minP_3"
## [1] "FOS::JUN_5bp_21bp_mCMV_1"
## [1] "FOS::JUN_5bp_21bp_mCMV_2"
## [1] "FOS::JUN_5bp_21bp_mCMV_3"
## [1] "FOS::JUN_5bp_21bp_minP_1"
## [1] "FOS::JUN_5bp_21bp_minP_2"
## [1] "FOS::JUN_5bp_21bp_minP_3"
## [1] "FOS::JUN_TF-seq_NA_10bp_mCMV_NA"
## [1] "FOS::JUN_TF-seq_NA_10bp_minP_NA"
## [1] "FOS::JUN_TF-seq_NA_21bp_mCMV_NA"
## [1] "FOS::JUN_TF-seq_NA_21bp_minP_NA"
## [1] "FOS::JUN_promega_NA_10bp_mCMV_NA"
## [1] "FOS::JUN_promega_NA_10bp_minP_NA"
## [1] "FOS::JUN_promega_NA_21bp_mCMV_NA"
## [1] "FOS::JUN_promega_NA_21bp_minP_NA"
## [1] "FOS::JUN_promega_long_NA_10bp_mCMV_NA"
## [1] "FOS::JUN_promega_long_NA_10bp_minP_NA"
## [1] "FOS::JUN_romanov_NA_10bp_mCMV_NA"
## [1] "FOS::JUN_romanov_NA_10bp_minP_NA"
## [1] "FOS::JUN_romanov_NA_21bp_mCMV_NA"
## [1] "FOS::JUN_romanov_NA_21bp_minP_NA"
## [1] "FOSL1_10bp_10bp_mCMV_1"
## [1] "FOSL1_10bp_10bp_mCMV_2"
## [1] "FOSL1_10bp_10bp_mCMV_3"
## [1] "FOSL1_10bp_10bp_minP_1"
## [1] "FOSL1_10bp_10bp_minP_2"
## [1] "FOSL1_10bp_10bp_minP_3"
## [1] "FOSL1_10bp_21bp_Random_1"
## [1] "FOSL1_10bp_21bp_mCMV_1"
## [1] "FOSL1_10bp_21bp_mCMV_2"
## [1] "FOSL1_10bp_21bp_mCMV_3"
## [1] "FOSL1_10bp_21bp_minP_1"
## [1] "FOSL1_10bp_21bp_minP_2"
## [1] "FOSL1_10bp_21bp_minP_3"
## [1] "FOSL1_5bp_10bp_mCMV_1"
## [1] "FOSL1_5bp_10bp_mCMV_2"
## [1] "FOSL1_5bp_10bp_mCMV_3"
## [1] "FOSL1_5bp_10bp_minP_1"
## [1] "FOSL1_5bp_10bp_minP_2"
## [1] "FOSL1_5bp_10bp_minP_3"
## [1] "FOSL1_5bp_21bp_mCMV_1"
## [1] "FOSL1_5bp_21bp_mCMV_2"
## [1] "FOSL1_5bp_21bp_mCMV_3"
## [1] "FOSL1_5bp_21bp_minP_1"
## [1] "FOSL1_5bp_21bp_minP_2"
## [1] "FOSL1_5bp_21bp_minP_3"
## [1] "FOXA1_10bp_10bp_mCMV_1"
## [1] "FOXA1_10bp_10bp_mCMV_2"
## [1] "FOXA1_10bp_10bp_mCMV_3"
## [1] "FOXA1_10bp_10bp_minP_1"
## [1] "FOXA1_10bp_10bp_minP_2"
## [1] "FOXA1_10bp_10bp_minP_3"
## [1] "FOXA1_10bp_21bp_Random_1"
## [1] "FOXA1_10bp_21bp_mCMV_1"
## [1] "FOXA1_10bp_21bp_mCMV_2"
## [1] "FOXA1_10bp_21bp_mCMV_3"
## [1] "FOXA1_10bp_21bp_minP_1"
## [1] "FOXA1_10bp_21bp_minP_2"
## [1] "FOXA1_10bp_21bp_minP_3"
## [1] "FOXA1_5bp_10bp_mCMV_1"
## [1] "FOXA1_5bp_10bp_mCMV_2"
## [1] "FOXA1_5bp_10bp_mCMV_3"
## [1] "FOXA1_5bp_10bp_minP_1"
## [1] "FOXA1_5bp_10bp_minP_2"
## [1] "FOXA1_5bp_10bp_minP_3"
## [1] "FOXA1_5bp_21bp_mCMV_1"
## [1] "FOXA1_5bp_21bp_mCMV_2"
## [1] "FOXA1_5bp_21bp_mCMV_3"
## [1] "FOXA1_5bp_21bp_minP_1"
## [1] "FOXA1_5bp_21bp_minP_2"
## [1] "FOXA1_5bp_21bp_minP_3"
## [1] "FOXA1_romanov_NA_10bp_mCMV_NA"
## [1] "FOXA1_romanov_NA_10bp_minP_NA"
## [1] "FOXA1_romanov_NA_21bp_mCMV_NA"
## [1] "FOXA1_romanov_NA_21bp_minP_NA"
## [1] "FOXO1_10bp_10bp_mCMV_1"
## [1] "FOXO1_10bp_10bp_mCMV_2"
## [1] "FOXO1_10bp_10bp_mCMV_3"
## [1] "FOXO1_10bp_10bp_minP_1"
## [1] "FOXO1_10bp_10bp_minP_2"
## [1] "FOXO1_10bp_10bp_minP_3"
## [1] "FOXO1_10bp_21bp_Random_1"
## [1] "FOXO1_10bp_21bp_mCMV_1"
## [1] "FOXO1_10bp_21bp_mCMV_2"
## [1] "FOXO1_10bp_21bp_mCMV_3"
## [1] "FOXO1_10bp_21bp_minP_1"
## [1] "FOXO1_10bp_21bp_minP_2"
## [1] "FOXO1_10bp_21bp_minP_3"
## [1] "FOXO1_5bp_10bp_mCMV_1"
## [1] "FOXO1_5bp_10bp_mCMV_2"
## [1] "FOXO1_5bp_10bp_mCMV_3"
## [1] "FOXO1_5bp_10bp_minP_1"
## [1] "FOXO1_5bp_10bp_minP_2"
## [1] "FOXO1_5bp_10bp_minP_3"
## [1] "FOXO1_5bp_21bp_mCMV_1"
## [1] "FOXO1_5bp_21bp_mCMV_2"
## [1] "FOXO1_5bp_21bp_mCMV_3"
## [1] "FOXO1_5bp_21bp_minP_1"
## [1] "FOXO1_5bp_21bp_minP_2"
## [1] "FOXO1_5bp_21bp_minP_3"
## [1] "FOXO1_TF-seq_NA_10bp_mCMV_NA"
## [1] "FOXO1_TF-seq_NA_10bp_minP_NA"
## [1] "FOXO1_TF-seq_NA_21bp_mCMV_NA"
## [1] "FOXO1_TF-seq_NA_21bp_minP_NA"
## [1] "FOXO1_romanov_NA_10bp_mCMV_NA"
## [1] "FOXO1_romanov_NA_10bp_minP_NA"
## [1] "FOXO1_romanov_NA_21bp_mCMV_NA"
## [1] "FOXO1_romanov_NA_21bp_minP_NA"
## [1] "GATA1_10bp_10bp_mCMV_1"
## [1] "GATA1_10bp_10bp_mCMV_2"
## [1] "GATA1_10bp_10bp_mCMV_3"
## [1] "GATA1_10bp_10bp_minP_1"
## [1] "GATA1_10bp_10bp_minP_2"
## [1] "GATA1_10bp_10bp_minP_3"
## [1] "GATA1_10bp_21bp_Random_1"
## [1] "GATA1_10bp_21bp_mCMV_1"
## [1] "GATA1_10bp_21bp_mCMV_2"
## [1] "GATA1_10bp_21bp_mCMV_3"
## [1] "GATA1_10bp_21bp_minP_1"
## [1] "GATA1_10bp_21bp_minP_2"
## [1] "GATA1_10bp_21bp_minP_3"
## [1] "GATA1_5bp_10bp_mCMV_1"
## [1] "GATA1_5bp_10bp_mCMV_2"
## [1] "GATA1_5bp_10bp_mCMV_3"
## [1] "GATA1_5bp_10bp_minP_1"
## [1] "GATA1_5bp_10bp_minP_2"
## [1] "GATA1_5bp_10bp_minP_3"
## [1] "GATA1_5bp_21bp_mCMV_1"
## [1] "GATA1_5bp_21bp_mCMV_2"
## [1] "GATA1_5bp_21bp_mCMV_3"
## [1] "GATA1_5bp_21bp_minP_1"
## [1] "GATA1_5bp_21bp_minP_2"
## [1] "GATA1_5bp_21bp_minP_3"
## [1] "GATA1_romanov_NA_10bp_mCMV_NA"
## [1] "GATA1_romanov_NA_10bp_minP_NA"
## [1] "GATA1_romanov_NA_21bp_mCMV_NA"
## [1] "GATA1_romanov_NA_21bp_minP_NA"
## [1] "GATA3_TF-seq_NA_10bp_mCMV_NA"
## [1] "GATA3_TF-seq_NA_10bp_minP_NA"
## [1] "GATA3_TF-seq_NA_21bp_mCMV_NA"
## [1] "GATA3_TF-seq_NA_21bp_minP_NA"
## [1] "GATA4_10bp_10bp_mCMV_1"
## [1] "GATA4_10bp_10bp_mCMV_2"
## [1] "GATA4_10bp_10bp_mCMV_3"
## [1] "GATA4_10bp_10bp_minP_1"
## [1] "GATA4_10bp_10bp_minP_2"
## [1] "GATA4_10bp_10bp_minP_3"
## [1] "GATA4_10bp_21bp_Random_1"
## [1] "GATA4_10bp_21bp_mCMV_1"
## [1] "GATA4_10bp_21bp_mCMV_2"
## [1] "GATA4_10bp_21bp_mCMV_3"
## [1] "GATA4_10bp_21bp_minP_1"
## [1] "GATA4_10bp_21bp_minP_2"
## [1] "GATA4_10bp_21bp_minP_3"
## [1] "GATA4_5bp_10bp_mCMV_1"
## [1] "GATA4_5bp_10bp_mCMV_2"
## [1] "GATA4_5bp_10bp_mCMV_3"
## [1] "GATA4_5bp_10bp_minP_1"
## [1] "GATA4_5bp_10bp_minP_2"
## [1] "GATA4_5bp_10bp_minP_3"
## [1] "GATA4_5bp_21bp_mCMV_1"
## [1] "GATA4_5bp_21bp_mCMV_2"
## [1] "GATA4_5bp_21bp_mCMV_3"
## [1] "GATA4_5bp_21bp_minP_1"
## [1] "GATA4_5bp_21bp_minP_2"
## [1] "GATA4_5bp_21bp_minP_3"
## [1] "GBX2_10bp_10bp_hBGm_1"
## [1] "GBX2_10bp_10bp_hBGm_2"
## [1] "GBX2_10bp_10bp_hBGm_3"
## [1] "GBX2_10bp_10bp_mCMV_1"
## [1] "GBX2_10bp_10bp_mCMV_2"
## [1] "GBX2_10bp_10bp_mCMV_3"
## [1] "GBX2_10bp_10bp_minP_1"
## [1] "GBX2_10bp_10bp_minP_2"
## [1] "GBX2_10bp_10bp_minP_3"
## [1] "GBX2_10bp_21bp_Random_1"
## [1] "GBX2_10bp_21bp_hBGm_1"
## [1] "GBX2_10bp_21bp_hBGm_2"
## [1] "GBX2_10bp_21bp_hBGm_3"
## [1] "GBX2_10bp_21bp_mCMV_1"
## [1] "GBX2_10bp_21bp_mCMV_2"
## [1] "GBX2_10bp_21bp_mCMV_3"
## [1] "GBX2_10bp_21bp_minP_1"
## [1] "GBX2_10bp_21bp_minP_2"
## [1] "GBX2_10bp_21bp_minP_3"
## [1] "GBX2_5bp_10bp_hBGm_1"
## [1] "GBX2_5bp_10bp_hBGm_2"
## [1] "GBX2_5bp_10bp_hBGm_3"
## [1] "GBX2_5bp_10bp_mCMV_1"
## [1] "GBX2_5bp_10bp_mCMV_2"
## [1] "GBX2_5bp_10bp_mCMV_3"
## [1] "GBX2_5bp_10bp_minP_1"
## [1] "GBX2_5bp_10bp_minP_2"
## [1] "GBX2_5bp_10bp_minP_3"
## [1] "GBX2_5bp_21bp_hBGm_1"
## [1] "GBX2_5bp_21bp_hBGm_2"
## [1] "GBX2_5bp_21bp_hBGm_3"
## [1] "GBX2_5bp_21bp_mCMV_1"
## [1] "GBX2_5bp_21bp_mCMV_2"
## [1] "GBX2_5bp_21bp_mCMV_3"
## [1] "GBX2_5bp_21bp_minP_1"
## [1] "GBX2_5bp_21bp_minP_2"
## [1] "GBX2_5bp_21bp_minP_3"
## [1] "GLI1_10bp_10bp_hBGm_1"
## [1] "GLI1_10bp_10bp_hBGm_2"
## [1] "GLI1_10bp_10bp_hBGm_3"
## [1] "GLI1_10bp_10bp_mCMV_1"
## [1] "GLI1_10bp_10bp_mCMV_2"
## [1] "GLI1_10bp_10bp_mCMV_3"
## [1] "GLI1_10bp_10bp_minP_1"
## [1] "GLI1_10bp_10bp_minP_2"
## [1] "GLI1_10bp_10bp_minP_3"
## [1] "GLI1_10bp_21bp_Random_1"
## [1] "GLI1_10bp_21bp_hBGm_1"
## [1] "GLI1_10bp_21bp_hBGm_2"
## [1] "GLI1_10bp_21bp_hBGm_3"
## [1] "GLI1_10bp_21bp_mCMV_1"
## [1] "GLI1_10bp_21bp_mCMV_2"
## [1] "GLI1_10bp_21bp_mCMV_3"
## [1] "GLI1_10bp_21bp_minP_1"
## [1] "GLI1_10bp_21bp_minP_2"
## [1] "GLI1_10bp_21bp_minP_3"
## [1] "GLI1_5bp_10bp_hBGm_1"
## [1] "GLI1_5bp_10bp_hBGm_2"
## [1] "GLI1_5bp_10bp_hBGm_3"
## [1] "GLI1_5bp_10bp_mCMV_1"
## [1] "GLI1_5bp_10bp_mCMV_2"
## [1] "GLI1_5bp_10bp_mCMV_3"
## [1] "GLI1_5bp_10bp_minP_1"
## [1] "GLI1_5bp_10bp_minP_2"
## [1] "GLI1_5bp_10bp_minP_3"
## [1] "GLI1_5bp_21bp_hBGm_1"
## [1] "GLI1_5bp_21bp_hBGm_2"
## [1] "GLI1_5bp_21bp_hBGm_3"
## [1] "GLI1_5bp_21bp_mCMV_1"
## [1] "GLI1_5bp_21bp_mCMV_2"
## [1] "GLI1_5bp_21bp_mCMV_3"
## [1] "GLI1_5bp_21bp_minP_1"
## [1] "GLI1_5bp_21bp_minP_2"
## [1] "GLI1_5bp_21bp_minP_3"
## [1] "GLI1_TF-seq_NA_10bp_mCMV_NA"
## [1] "GLI1_TF-seq_NA_10bp_minP_NA"
## [1] "GLI1_TF-seq_NA_21bp_mCMV_NA"
## [1] "GLI1_TF-seq_NA_21bp_minP_NA"
## [1] "GLI1_romanov_NA_10bp_mCMV_NA"
## [1] "GLI1_romanov_NA_10bp_minP_NA"
## [1] "GLI1_romanov_NA_21bp_mCMV_NA"
## [1] "GLI1_romanov_NA_21bp_minP_NA"
## [1] "GRHL1_10bp_10bp_mCMV_1"
## [1] "GRHL1_10bp_10bp_mCMV_2"
## [1] "GRHL1_10bp_10bp_mCMV_3"
## [1] "GRHL1_10bp_10bp_minP_1"
## [1] "GRHL1_10bp_10bp_minP_2"
## [1] "GRHL1_10bp_10bp_minP_3"
## [1] "GRHL1_10bp_21bp_Random_1"
## [1] "GRHL1_10bp_21bp_mCMV_1"
## [1] "GRHL1_10bp_21bp_mCMV_2"
## [1] "GRHL1_10bp_21bp_mCMV_3"
## [1] "GRHL1_10bp_21bp_minP_1"
## [1] "GRHL1_10bp_21bp_minP_2"
## [1] "GRHL1_10bp_21bp_minP_3"
## [1] "GRHL1_5bp_10bp_mCMV_1"
## [1] "GRHL1_5bp_10bp_mCMV_2"
## [1] "GRHL1_5bp_10bp_mCMV_3"
## [1] "GRHL1_5bp_10bp_minP_1"
## [1] "GRHL1_5bp_10bp_minP_2"
## [1] "GRHL1_5bp_10bp_minP_3"
## [1] "GRHL1_5bp_21bp_mCMV_1"
## [1] "GRHL1_5bp_21bp_mCMV_2"
## [1] "GRHL1_5bp_21bp_mCMV_3"
## [1] "GRHL1_5bp_21bp_minP_1"
## [1] "GRHL1_5bp_21bp_minP_2"
## [1] "GRHL1_5bp_21bp_minP_3"
## [1] "HIF1A_promega_NA_10bp_mCMV_NA"
## [1] "HIF1A_promega_NA_10bp_minP_NA"
## [1] "HIF1A_promega_NA_21bp_mCMV_NA"
## [1] "HIF1A_promega_NA_21bp_minP_NA"
## [1] "HIF1A_promega_long_NA_10bp_mCMV_NA"
## [1] "HIF1A_promega_long_NA_10bp_minP_NA"
## [1] "HNF1A_10bp_10bp_mCMV_1"
## [1] "HNF1A_10bp_10bp_mCMV_2"
## [1] "HNF1A_10bp_10bp_mCMV_3"
## [1] "HNF1A_10bp_10bp_minP_1"
## [1] "HNF1A_10bp_10bp_minP_2"
## [1] "HNF1A_10bp_10bp_minP_3"
## [1] "HNF1A_10bp_21bp_Random_1"
## [1] "HNF1A_10bp_21bp_mCMV_1"
## [1] "HNF1A_10bp_21bp_mCMV_2"
## [1] "HNF1A_10bp_21bp_mCMV_3"
## [1] "HNF1A_10bp_21bp_minP_1"
## [1] "HNF1A_10bp_21bp_minP_2"
## [1] "HNF1A_10bp_21bp_minP_3"
## [1] "HNF1A_5bp_10bp_mCMV_1"
## [1] "HNF1A_5bp_10bp_mCMV_2"
## [1] "HNF1A_5bp_10bp_mCMV_3"
## [1] "HNF1A_5bp_10bp_minP_1"
## [1] "HNF1A_5bp_10bp_minP_2"
## [1] "HNF1A_5bp_10bp_minP_3"
## [1] "HNF1A_5bp_21bp_mCMV_1"
## [1] "HNF1A_5bp_21bp_mCMV_2"
## [1] "HNF1A_5bp_21bp_mCMV_3"
## [1] "HNF1A_5bp_21bp_minP_1"
## [1] "HNF1A_5bp_21bp_minP_2"
## [1] "HNF1A_5bp_21bp_minP_3"
## [1] "HNF4A_10bp_10bp_mCMV_1"
## [1] "HNF4A_10bp_10bp_mCMV_2"
## [1] "HNF4A_10bp_10bp_mCMV_3"
## [1] "HNF4A_10bp_10bp_minP_1"
## [1] "HNF4A_10bp_10bp_minP_2"
## [1] "HNF4A_10bp_10bp_minP_3"
## [1] "HNF4A_10bp_21bp_Random_1"
## [1] "HNF4A_10bp_21bp_mCMV_1"
## [1] "HNF4A_10bp_21bp_mCMV_2"
## [1] "HNF4A_10bp_21bp_mCMV_3"
## [1] "HNF4A_10bp_21bp_minP_1"
## [1] "HNF4A_10bp_21bp_minP_2"
## [1] "HNF4A_10bp_21bp_minP_3"
## [1] "HNF4A_5bp_10bp_mCMV_1"
## [1] "HNF4A_5bp_10bp_mCMV_2"
## [1] "HNF4A_5bp_10bp_mCMV_3"
## [1] "HNF4A_5bp_10bp_minP_1"
## [1] "HNF4A_5bp_10bp_minP_2"
## [1] "HNF4A_5bp_10bp_minP_3"
## [1] "HNF4A_5bp_21bp_mCMV_1"
## [1] "HNF4A_5bp_21bp_mCMV_2"
## [1] "HNF4A_5bp_21bp_mCMV_3"
## [1] "HNF4A_5bp_21bp_minP_1"
## [1] "HNF4A_5bp_21bp_minP_2"
## [1] "HNF4A_5bp_21bp_minP_3"
## [1] "HNF4A_TF-seq_NA_10bp_mCMV_NA"
## [1] "HNF4A_TF-seq_NA_10bp_minP_NA"
## [1] "HNF4A_TF-seq_NA_21bp_mCMV_NA"
## [1] "HNF4A_TF-seq_NA_21bp_minP_NA"
## [1] "HOMEZ_10bp_10bp_hBGm_1"
## [1] "HOMEZ_10bp_10bp_hBGm_2"
## [1] "HOMEZ_10bp_10bp_hBGm_3"
## [1] "HOMEZ_10bp_10bp_mCMV_1"
## [1] "HOMEZ_10bp_10bp_mCMV_2"
## [1] "HOMEZ_10bp_10bp_mCMV_3"
## [1] "HOMEZ_10bp_10bp_minP_1"
## [1] "HOMEZ_10bp_10bp_minP_2"
## [1] "HOMEZ_10bp_10bp_minP_3"
## [1] "HOMEZ_10bp_21bp_Random_1"
## [1] "HOMEZ_10bp_21bp_hBGm_1"
## [1] "HOMEZ_10bp_21bp_hBGm_2"
## [1] "HOMEZ_10bp_21bp_hBGm_3"
## [1] "HOMEZ_10bp_21bp_mCMV_1"
## [1] "HOMEZ_10bp_21bp_mCMV_2"
## [1] "HOMEZ_10bp_21bp_mCMV_3"
## [1] "HOMEZ_10bp_21bp_minP_1"
## [1] "HOMEZ_10bp_21bp_minP_2"
## [1] "HOMEZ_10bp_21bp_minP_3"
## [1] "HOMEZ_5bp_10bp_hBGm_1"
## [1] "HOMEZ_5bp_10bp_hBGm_2"
## [1] "HOMEZ_5bp_10bp_hBGm_3"
## [1] "HOMEZ_5bp_10bp_mCMV_1"
## [1] "HOMEZ_5bp_10bp_mCMV_2"
## [1] "HOMEZ_5bp_10bp_mCMV_3"
## [1] "HOMEZ_5bp_10bp_minP_1"
## [1] "HOMEZ_5bp_10bp_minP_2"
## [1] "HOMEZ_5bp_10bp_minP_3"
## [1] "HOMEZ_5bp_21bp_hBGm_1"
## [1] "HOMEZ_5bp_21bp_hBGm_2"
## [1] "HOMEZ_5bp_21bp_hBGm_3"
## [1] "HOMEZ_5bp_21bp_mCMV_1"
## [1] "HOMEZ_5bp_21bp_mCMV_2"
## [1] "HOMEZ_5bp_21bp_mCMV_3"
## [1] "HOMEZ_5bp_21bp_minP_1"
## [1] "HOMEZ_5bp_21bp_minP_2"
## [1] "HOMEZ_5bp_21bp_minP_3"
## [1] "HSF1_10bp_10bp_mCMV_1"
## [1] "HSF1_10bp_10bp_mCMV_2"
## [1] "HSF1_10bp_10bp_mCMV_3"
## [1] "HSF1_10bp_10bp_minP_1"
## [1] "HSF1_10bp_10bp_minP_2"
## [1] "HSF1_10bp_10bp_minP_3"
## [1] "HSF1_10bp_21bp_Random_1"
## [1] "HSF1_10bp_21bp_mCMV_1"
## [1] "HSF1_10bp_21bp_mCMV_2"
## [1] "HSF1_10bp_21bp_mCMV_3"
## [1] "HSF1_10bp_21bp_minP_1"
## [1] "HSF1_10bp_21bp_minP_2"
## [1] "HSF1_10bp_21bp_minP_3"
## [1] "HSF1_5bp_10bp_mCMV_1"
## [1] "HSF1_5bp_10bp_mCMV_2"
## [1] "HSF1_5bp_10bp_mCMV_3"
## [1] "HSF1_5bp_10bp_minP_1"
## [1] "HSF1_5bp_10bp_minP_2"
## [1] "HSF1_5bp_10bp_minP_3"
## [1] "HSF1_5bp_21bp_mCMV_1"
## [1] "HSF1_5bp_21bp_mCMV_2"
## [1] "HSF1_5bp_21bp_mCMV_3"
## [1] "HSF1_5bp_21bp_minP_1"
## [1] "HSF1_5bp_21bp_minP_2"
## [1] "HSF1_5bp_21bp_minP_3"
## [1] "HSF1_promega_NA_10bp_mCMV_NA"
## [1] "HSF1_promega_NA_10bp_minP_NA"
## [1] "HSF1_promega_NA_21bp_mCMV_NA"
## [1] "HSF1_promega_NA_21bp_minP_NA"
## [1] "HSF1_promega_long_NA_10bp_mCMV_NA"
## [1] "HSF1_promega_long_NA_10bp_minP_NA"
## [1] "HSF1_romanov_NA_10bp_mCMV_NA"
## [1] "HSF1_romanov_NA_10bp_minP_NA"
## [1] "HSF1_romanov_NA_21bp_mCMV_NA"
## [1] "HSF1_romanov_NA_21bp_minP_NA"
## [1] "IRF1_TF-seq_NA_10bp_mCMV_NA"
## [1] "IRF1_TF-seq_NA_10bp_minP_NA"
## [1] "IRF1_TF-seq_NA_21bp_mCMV_NA"
## [1] "IRF1_TF-seq_NA_21bp_minP_NA"
## [1] "IRF3_10bp_10bp_hBGm_1"
## [1] "IRF3_10bp_10bp_hBGm_2"
## [1] "IRF3_10bp_10bp_hBGm_3"
## [1] "IRF3_10bp_10bp_mCMV_1"
## [1] "IRF3_10bp_10bp_mCMV_2"
## [1] "IRF3_10bp_10bp_mCMV_3"
## [1] "IRF3_10bp_10bp_minP_1"
## [1] "IRF3_10bp_10bp_minP_2"
## [1] "IRF3_10bp_10bp_minP_3"
## [1] "IRF3_10bp_21bp_Random_1"
## [1] "IRF3_10bp_21bp_hBGm_1"
## [1] "IRF3_10bp_21bp_hBGm_2"
## [1] "IRF3_10bp_21bp_hBGm_3"
## [1] "IRF3_10bp_21bp_mCMV_1"
## [1] "IRF3_10bp_21bp_mCMV_2"
## [1] "IRF3_10bp_21bp_mCMV_3"
## [1] "IRF3_10bp_21bp_minP_1"
## [1] "IRF3_10bp_21bp_minP_2"
## [1] "IRF3_10bp_21bp_minP_3"
## [1] "IRF3_5bp_10bp_hBGm_1"
## [1] "IRF3_5bp_10bp_hBGm_2"
## [1] "IRF3_5bp_10bp_hBGm_3"
## [1] "IRF3_5bp_10bp_mCMV_1"
## [1] "IRF3_5bp_10bp_mCMV_2"
## [1] "IRF3_5bp_10bp_mCMV_3"
## [1] "IRF3_5bp_10bp_minP_1"
## [1] "IRF3_5bp_10bp_minP_2"
## [1] "IRF3_5bp_10bp_minP_3"
## [1] "IRF3_5bp_21bp_hBGm_1"
## [1] "IRF3_5bp_21bp_hBGm_2"
## [1] "IRF3_5bp_21bp_hBGm_3"
## [1] "IRF3_5bp_21bp_mCMV_1"
## [1] "IRF3_5bp_21bp_mCMV_2"
## [1] "IRF3_5bp_21bp_mCMV_3"
## [1] "IRF3_5bp_21bp_minP_1"
## [1] "IRF3_5bp_21bp_minP_2"
## [1] "IRF3_5bp_21bp_minP_3"
## [1] "IRF3_TF-seq_NA_10bp_mCMV_NA"
## [1] "IRF3_TF-seq_NA_10bp_minP_NA"
## [1] "IRF3_TF-seq_NA_21bp_mCMV_NA"
## [1] "IRF3_TF-seq_NA_21bp_minP_NA"
## [1] "IRF3_promega_NA_10bp_mCMV_NA"
## [1] "IRF3_promega_NA_10bp_minP_NA"
## [1] "IRF3_promega_NA_21bp_mCMV_NA"
## [1] "IRF3_promega_NA_21bp_minP_NA"
## [1] "IRF3_romanov_NA_10bp_mCMV_NA"
## [1] "IRF3_romanov_NA_10bp_minP_NA"
## [1] "IRF3_romanov_NA_21bp_mCMV_NA"
## [1] "IRF3_romanov_NA_21bp_minP_NA"
## [1] "IRX3_10bp_10bp_hBGm_1"
## [1] "IRX3_10bp_10bp_hBGm_2"
## [1] "IRX3_10bp_10bp_hBGm_3"
## [1] "IRX3_10bp_10bp_mCMV_1"
## [1] "IRX3_10bp_10bp_mCMV_2"
## [1] "IRX3_10bp_10bp_mCMV_3"
## [1] "IRX3_10bp_10bp_minP_1"
## [1] "IRX3_10bp_10bp_minP_2"
## [1] "IRX3_10bp_10bp_minP_3"
## [1] "IRX3_10bp_21bp_Random_1"
## [1] "IRX3_10bp_21bp_hBGm_1"
## [1] "IRX3_10bp_21bp_hBGm_2"
## [1] "IRX3_10bp_21bp_hBGm_3"
## [1] "IRX3_10bp_21bp_mCMV_1"
## [1] "IRX3_10bp_21bp_mCMV_2"
## [1] "IRX3_10bp_21bp_mCMV_3"
## [1] "IRX3_10bp_21bp_minP_1"
## [1] "IRX3_10bp_21bp_minP_2"
## [1] "IRX3_10bp_21bp_minP_3"
## [1] "IRX3_5bp_10bp_hBGm_1"
## [1] "IRX3_5bp_10bp_hBGm_2"
## [1] "IRX3_5bp_10bp_hBGm_3"
## [1] "IRX3_5bp_10bp_mCMV_1"
## [1] "IRX3_5bp_10bp_mCMV_2"
## [1] "IRX3_5bp_10bp_mCMV_3"
## [1] "IRX3_5bp_10bp_minP_1"
## [1] "IRX3_5bp_10bp_minP_2"
## [1] "IRX3_5bp_10bp_minP_3"
## [1] "IRX3_5bp_21bp_hBGm_1"
## [1] "IRX3_5bp_21bp_hBGm_2"
## [1] "IRX3_5bp_21bp_hBGm_3"
## [1] "IRX3_5bp_21bp_mCMV_1"
## [1] "IRX3_5bp_21bp_mCMV_2"
## [1] "IRX3_5bp_21bp_mCMV_3"
## [1] "IRX3_5bp_21bp_minP_1"
## [1] "IRX3_5bp_21bp_minP_2"
## [1] "IRX3_5bp_21bp_minP_3"
## [1] "KLF4_10bp_10bp_hBGm_1"
## [1] "KLF4_10bp_10bp_hBGm_2"
## [1] "KLF4_10bp_10bp_hBGm_3"
## [1] "KLF4_10bp_10bp_mCMV_1"
## [1] "KLF4_10bp_10bp_mCMV_2"
## [1] "KLF4_10bp_10bp_mCMV_3"
## [1] "KLF4_10bp_10bp_minP_1"
## [1] "KLF4_10bp_10bp_minP_2"
## [1] "KLF4_10bp_10bp_minP_3"
## [1] "KLF4_10bp_21bp_Random_1"
## [1] "KLF4_10bp_21bp_hBGm_1"
## [1] "KLF4_10bp_21bp_hBGm_2"
## [1] "KLF4_10bp_21bp_hBGm_3"
## [1] "KLF4_10bp_21bp_mCMV_1"
## [1] "KLF4_10bp_21bp_mCMV_2"
## [1] "KLF4_10bp_21bp_mCMV_3"
## [1] "KLF4_10bp_21bp_minP_1"
## [1] "KLF4_10bp_21bp_minP_2"
## [1] "KLF4_10bp_21bp_minP_3"
## [1] "KLF4_5bp_10bp_hBGm_1"
## [1] "KLF4_5bp_10bp_hBGm_2"
## [1] "KLF4_5bp_10bp_hBGm_3"
## [1] "KLF4_5bp_10bp_mCMV_1"
## [1] "KLF4_5bp_10bp_mCMV_2"
## [1] "KLF4_5bp_10bp_mCMV_3"
## [1] "KLF4_5bp_10bp_minP_1"
## [1] "KLF4_5bp_10bp_minP_2"
## [1] "KLF4_5bp_10bp_minP_3"
## [1] "KLF4_5bp_21bp_hBGm_1"
## [1] "KLF4_5bp_21bp_hBGm_2"
## [1] "KLF4_5bp_21bp_hBGm_3"
## [1] "KLF4_5bp_21bp_mCMV_1"
## [1] "KLF4_5bp_21bp_mCMV_2"
## [1] "KLF4_5bp_21bp_mCMV_3"
## [1] "KLF4_5bp_21bp_minP_1"
## [1] "KLF4_5bp_21bp_minP_2"
## [1] "KLF4_5bp_21bp_minP_3"
## [1] "MAF::NFE2_10bp_10bp_mCMV_1"
## [1] "MAF::NFE2_10bp_10bp_mCMV_2"
## [1] "MAF::NFE2_10bp_10bp_mCMV_3"
## [1] "MAF::NFE2_10bp_10bp_minP_1"
## [1] "MAF::NFE2_10bp_10bp_minP_2"
## [1] "MAF::NFE2_10bp_10bp_minP_3"
## [1] "MAF::NFE2_10bp_21bp_Random_1"
## [1] "MAF::NFE2_10bp_21bp_mCMV_1"
## [1] "MAF::NFE2_10bp_21bp_mCMV_2"
## [1] "MAF::NFE2_10bp_21bp_mCMV_3"
## [1] "MAF::NFE2_10bp_21bp_minP_1"
## [1] "MAF::NFE2_10bp_21bp_minP_2"
## [1] "MAF::NFE2_10bp_21bp_minP_3"
## [1] "MAF::NFE2_5bp_10bp_mCMV_1"
## [1] "MAF::NFE2_5bp_10bp_mCMV_2"
## [1] "MAF::NFE2_5bp_10bp_mCMV_3"
## [1] "MAF::NFE2_5bp_10bp_minP_1"
## [1] "MAF::NFE2_5bp_10bp_minP_2"
## [1] "MAF::NFE2_5bp_10bp_minP_3"
## [1] "MAF::NFE2_5bp_21bp_mCMV_1"
## [1] "MAF::NFE2_5bp_21bp_mCMV_2"
## [1] "MAF::NFE2_5bp_21bp_mCMV_3"
## [1] "MAF::NFE2_5bp_21bp_minP_1"
## [1] "MAF::NFE2_5bp_21bp_minP_2"
## [1] "MAF::NFE2_5bp_21bp_minP_3"
## [1] "MAF::NFE2_TF-seq_NA_10bp_mCMV_NA"
## [1] "MAF::NFE2_TF-seq_NA_10bp_minP_NA"
## [1] "MAF::NFE2_TF-seq_NA_21bp_mCMV_NA"
## [1] "MAF::NFE2_TF-seq_NA_21bp_minP_NA"
## [1] "MAFA_10bp_10bp_mCMV_1"
## [1] "MAFA_10bp_10bp_mCMV_2"
## [1] "MAFA_10bp_10bp_mCMV_3"
## [1] "MAFA_10bp_10bp_minP_1"
## [1] "MAFA_10bp_10bp_minP_2"
## [1] "MAFA_10bp_10bp_minP_3"
## [1] "MAFA_10bp_21bp_Random_1"
## [1] "MAFA_10bp_21bp_mCMV_1"
## [1] "MAFA_10bp_21bp_mCMV_2"
## [1] "MAFA_10bp_21bp_mCMV_3"
## [1] "MAFA_10bp_21bp_minP_1"
## [1] "MAFA_10bp_21bp_minP_2"
## [1] "MAFA_10bp_21bp_minP_3"
## [1] "MAFA_5bp_10bp_mCMV_1"
## [1] "MAFA_5bp_10bp_mCMV_2"
## [1] "MAFA_5bp_10bp_mCMV_3"
## [1] "MAFA_5bp_10bp_minP_1"
## [1] "MAFA_5bp_10bp_minP_2"
## [1] "MAFA_5bp_10bp_minP_3"
## [1] "MAFA_5bp_21bp_mCMV_1"
## [1] "MAFA_5bp_21bp_mCMV_2"
## [1] "MAFA_5bp_21bp_mCMV_3"
## [1] "MAFA_5bp_21bp_minP_1"
## [1] "MAFA_5bp_21bp_minP_2"
## [1] "MAFA_5bp_21bp_minP_3"
## [1] "MEF2A_10bp_10bp_mCMV_1"
## [1] "MEF2A_10bp_10bp_mCMV_2"
## [1] "MEF2A_10bp_10bp_mCMV_3"
## [1] "MEF2A_10bp_10bp_minP_1"
## [1] "MEF2A_10bp_10bp_minP_2"
## [1] "MEF2A_10bp_10bp_minP_3"
## [1] "MEF2A_10bp_21bp_Random_1"
## [1] "MEF2A_10bp_21bp_mCMV_1"
## [1] "MEF2A_10bp_21bp_mCMV_2"
## [1] "MEF2A_10bp_21bp_mCMV_3"
## [1] "MEF2A_10bp_21bp_minP_1"
## [1] "MEF2A_10bp_21bp_minP_2"
## [1] "MEF2A_10bp_21bp_minP_3"
## [1] "MEF2A_5bp_10bp_mCMV_1"
## [1] "MEF2A_5bp_10bp_mCMV_2"
## [1] "MEF2A_5bp_10bp_mCMV_3"
## [1] "MEF2A_5bp_10bp_minP_1"
## [1] "MEF2A_5bp_10bp_minP_2"
## [1] "MEF2A_5bp_10bp_minP_3"
## [1] "MEF2A_5bp_21bp_mCMV_1"
## [1] "MEF2A_5bp_21bp_mCMV_2"
## [1] "MEF2A_5bp_21bp_mCMV_3"
## [1] "MEF2A_5bp_21bp_minP_1"
## [1] "MEF2A_5bp_21bp_minP_2"
## [1] "MEF2A_5bp_21bp_minP_3"
## [1] "MTF1_10bp_10bp_mCMV_1"
## [1] "MTF1_10bp_10bp_mCMV_2"
## [1] "MTF1_10bp_10bp_mCMV_3"
## [1] "MTF1_10bp_10bp_minP_1"
## [1] "MTF1_10bp_10bp_minP_2"
## [1] "MTF1_10bp_10bp_minP_3"
## [1] "MTF1_10bp_21bp_Random_1"
## [1] "MTF1_10bp_21bp_mCMV_1"
## [1] "MTF1_10bp_21bp_mCMV_2"
## [1] "MTF1_10bp_21bp_mCMV_3"
## [1] "MTF1_10bp_21bp_minP_1"
## [1] "MTF1_10bp_21bp_minP_2"
## [1] "MTF1_10bp_21bp_minP_3"
## [1] "MTF1_5bp_10bp_mCMV_1"
## [1] "MTF1_5bp_10bp_mCMV_2"
## [1] "MTF1_5bp_10bp_mCMV_3"
## [1] "MTF1_5bp_10bp_minP_1"
## [1] "MTF1_5bp_10bp_minP_2"
## [1] "MTF1_5bp_10bp_minP_3"
## [1] "MTF1_5bp_21bp_mCMV_1"
## [1] "MTF1_5bp_21bp_mCMV_2"
## [1] "MTF1_5bp_21bp_mCMV_3"
## [1] "MTF1_5bp_21bp_minP_1"
## [1] "MTF1_5bp_21bp_minP_2"
## [1] "MTF1_5bp_21bp_minP_3"
## [1] "MTF1_promega_NA_10bp_mCMV_NA"
## [1] "MTF1_promega_NA_10bp_minP_NA"
## [1] "MTF1_promega_NA_21bp_mCMV_NA"
## [1] "MTF1_promega_NA_21bp_minP_NA"
## [1] "MYBL2_10bp_10bp_mCMV_1"
## [1] "MYBL2_10bp_10bp_mCMV_2"
## [1] "MYBL2_10bp_10bp_mCMV_3"
## [1] "MYBL2_10bp_10bp_minP_1"
## [1] "MYBL2_10bp_10bp_minP_2"
## [1] "MYBL2_10bp_10bp_minP_3"
## [1] "MYBL2_10bp_21bp_Random_1"
## [1] "MYBL2_10bp_21bp_mCMV_1"
## [1] "MYBL2_10bp_21bp_mCMV_2"
## [1] "MYBL2_10bp_21bp_mCMV_3"
## [1] "MYBL2_10bp_21bp_minP_1"
## [1] "MYBL2_10bp_21bp_minP_2"
## [1] "MYBL2_10bp_21bp_minP_3"
## [1] "MYBL2_5bp_10bp_mCMV_1"
## [1] "MYBL2_5bp_10bp_mCMV_2"
## [1] "MYBL2_5bp_10bp_mCMV_3"
## [1] "MYBL2_5bp_10bp_minP_1"
## [1] "MYBL2_5bp_10bp_minP_2"
## [1] "MYBL2_5bp_10bp_minP_3"
## [1] "MYBL2_5bp_21bp_mCMV_1"
## [1] "MYBL2_5bp_21bp_mCMV_2"
## [1] "MYBL2_5bp_21bp_mCMV_3"
## [1] "MYBL2_5bp_21bp_minP_1"
## [1] "MYBL2_5bp_21bp_minP_2"
## [1] "MYBL2_5bp_21bp_minP_3"
## [1] "MYBL2_romanov_NA_10bp_mCMV_NA"
## [1] "MYBL2_romanov_NA_10bp_minP_NA"
## [1] "MYBL2_romanov_NA_21bp_mCMV_NA"
## [1] "MYBL2_romanov_NA_21bp_minP_NA"
## [1] "Myc_romanov_NA_10bp_mCMV_NA"
## [1] "Myc_romanov_NA_10bp_minP_NA"
## [1] "Myc_romanov_NA_21bp_mCMV_NA"
## [1] "Myc_romanov_NA_21bp_minP_NA"
## [1] "NEUROG2_10bp_10bp_hBGm_1"
## [1] "NEUROG2_10bp_10bp_hBGm_2"
## [1] "NEUROG2_10bp_10bp_hBGm_3"
## [1] "NEUROG2_10bp_10bp_mCMV_1"
## [1] "NEUROG2_10bp_10bp_mCMV_2"
## [1] "NEUROG2_10bp_10bp_mCMV_3"
## [1] "NEUROG2_10bp_10bp_minP_1"
## [1] "NEUROG2_10bp_10bp_minP_2"
## [1] "NEUROG2_10bp_10bp_minP_3"
## [1] "NEUROG2_10bp_21bp_Random_1"
## [1] "NEUROG2_10bp_21bp_hBGm_1"
## [1] "NEUROG2_10bp_21bp_hBGm_2"
## [1] "NEUROG2_10bp_21bp_hBGm_3"
## [1] "NEUROG2_10bp_21bp_mCMV_1"
## [1] "NEUROG2_10bp_21bp_mCMV_2"
## [1] "NEUROG2_10bp_21bp_mCMV_3"
## [1] "NEUROG2_10bp_21bp_minP_1"
## [1] "NEUROG2_10bp_21bp_minP_2"
## [1] "NEUROG2_10bp_21bp_minP_3"
## [1] "NEUROG2_5bp_10bp_hBGm_1"
## [1] "NEUROG2_5bp_10bp_hBGm_2"
## [1] "NEUROG2_5bp_10bp_hBGm_3"
## [1] "NEUROG2_5bp_10bp_mCMV_1"
## [1] "NEUROG2_5bp_10bp_mCMV_2"
## [1] "NEUROG2_5bp_10bp_mCMV_3"
## [1] "NEUROG2_5bp_10bp_minP_1"
## [1] "NEUROG2_5bp_10bp_minP_2"
## [1] "NEUROG2_5bp_10bp_minP_3"
## [1] "NEUROG2_5bp_21bp_hBGm_1"
## [1] "NEUROG2_5bp_21bp_hBGm_2"
## [1] "NEUROG2_5bp_21bp_hBGm_3"
## [1] "NEUROG2_5bp_21bp_mCMV_1"
## [1] "NEUROG2_5bp_21bp_mCMV_2"
## [1] "NEUROG2_5bp_21bp_mCMV_3"
## [1] "NEUROG2_5bp_21bp_minP_1"
## [1] "NEUROG2_5bp_21bp_minP_2"
## [1] "NEUROG2_5bp_21bp_minP_3"
## [1] "NFAT5_10bp_10bp_mCMV_1"
## [1] "NFAT5_10bp_10bp_mCMV_2"
## [1] "NFAT5_10bp_10bp_mCMV_3"
## [1] "NFAT5_10bp_10bp_minP_1"
## [1] "NFAT5_10bp_10bp_minP_2"
## [1] "NFAT5_10bp_10bp_minP_3"
## [1] "NFAT5_10bp_21bp_Random_1"
## [1] "NFAT5_10bp_21bp_mCMV_1"
## [1] "NFAT5_10bp_21bp_mCMV_2"
## [1] "NFAT5_10bp_21bp_mCMV_3"
## [1] "NFAT5_10bp_21bp_minP_1"
## [1] "NFAT5_10bp_21bp_minP_2"
## [1] "NFAT5_10bp_21bp_minP_3"
## [1] "NFAT5_5bp_10bp_mCMV_1"
## [1] "NFAT5_5bp_10bp_mCMV_2"
## [1] "NFAT5_5bp_10bp_mCMV_3"
## [1] "NFAT5_5bp_10bp_minP_1"
## [1] "NFAT5_5bp_10bp_minP_2"
## [1] "NFAT5_5bp_10bp_minP_3"
## [1] "NFAT5_5bp_21bp_mCMV_1"
## [1] "NFAT5_5bp_21bp_mCMV_2"
## [1] "NFAT5_5bp_21bp_mCMV_3"
## [1] "NFAT5_5bp_21bp_minP_1"
## [1] "NFAT5_5bp_21bp_minP_2"
## [1] "NFAT5_5bp_21bp_minP_3"
## [1] "NFAT5_promega_NA_10bp_mCMV_NA"
## [1] "NFAT5_promega_NA_10bp_minP_NA"
## [1] "NFAT5_promega_NA_21bp_mCMV_NA"
## [1] "NFAT5_promega_NA_21bp_minP_NA"
## [1] "NFAT5_promega_long_NA_10bp_mCMV_NA"
## [1] "NFAT5_promega_long_NA_10bp_minP_NA"
## [1] "NFATc1_10bp_10bp_mCMV_1"
## [1] "NFATc1_10bp_10bp_mCMV_2"
## [1] "NFATc1_10bp_10bp_mCMV_3"
## [1] "NFATc1_10bp_10bp_minP_1"
## [1] "NFATc1_10bp_10bp_minP_2"
## [1] "NFATc1_10bp_10bp_minP_3"
## [1] "NFATc1_10bp_21bp_Random_1"
## [1] "NFATc1_10bp_21bp_mCMV_1"
## [1] "NFATc1_10bp_21bp_mCMV_2"
## [1] "NFATc1_10bp_21bp_mCMV_3"
## [1] "NFATc1_10bp_21bp_minP_1"
## [1] "NFATc1_10bp_21bp_minP_2"
## [1] "NFATc1_10bp_21bp_minP_3"
## [1] "NFATc1_5bp_10bp_mCMV_1"
## [1] "NFATc1_5bp_10bp_mCMV_2"
## [1] "NFATc1_5bp_10bp_mCMV_3"
## [1] "NFATc1_5bp_10bp_minP_1"
## [1] "NFATc1_5bp_10bp_minP_2"
## [1] "NFATc1_5bp_10bp_minP_3"
## [1] "NFATc1_5bp_21bp_mCMV_1"
## [1] "NFATc1_5bp_21bp_mCMV_2"
## [1] "NFATc1_5bp_21bp_mCMV_3"
## [1] "NFATc1_5bp_21bp_minP_1"
## [1] "NFATc1_5bp_21bp_minP_2"
## [1] "NFATc1_5bp_21bp_minP_3"
## [1] "NFE2L2_10bp_10bp_hBGm_1"
## [1] "NFE2L2_10bp_10bp_hBGm_2"
## [1] "NFE2L2_10bp_10bp_hBGm_3"
## [1] "NFE2L2_10bp_10bp_mCMV_1"
## [1] "NFE2L2_10bp_10bp_mCMV_2"
## [1] "NFE2L2_10bp_10bp_mCMV_3"
## [1] "NFE2L2_10bp_10bp_minP_1"
## [1] "NFE2L2_10bp_10bp_minP_2"
## [1] "NFE2L2_10bp_10bp_minP_3"
## [1] "NFE2L2_10bp_21bp_Random_1"
## [1] "NFE2L2_10bp_21bp_hBGm_1"
## [1] "NFE2L2_10bp_21bp_hBGm_2"
## [1] "NFE2L2_10bp_21bp_hBGm_3"
## [1] "NFE2L2_10bp_21bp_mCMV_1"
## [1] "NFE2L2_10bp_21bp_mCMV_2"
## [1] "NFE2L2_10bp_21bp_mCMV_3"
## [1] "NFE2L2_10bp_21bp_minP_1"
## [1] "NFE2L2_10bp_21bp_minP_2"
## [1] "NFE2L2_10bp_21bp_minP_3"
## [1] "NFE2L2_5bp_10bp_hBGm_1"
## [1] "NFE2L2_5bp_10bp_hBGm_2"
## [1] "NFE2L2_5bp_10bp_hBGm_3"
## [1] "NFE2L2_5bp_10bp_mCMV_1"
## [1] "NFE2L2_5bp_10bp_mCMV_2"
## [1] "NFE2L2_5bp_10bp_mCMV_3"
## [1] "NFE2L2_5bp_10bp_minP_1"
## [1] "NFE2L2_5bp_10bp_minP_2"
## [1] "NFE2L2_5bp_10bp_minP_3"
## [1] "NFE2L2_5bp_21bp_hBGm_1"
## [1] "NFE2L2_5bp_21bp_hBGm_2"
## [1] "NFE2L2_5bp_21bp_hBGm_3"
## [1] "NFE2L2_5bp_21bp_mCMV_1"
## [1] "NFE2L2_5bp_21bp_mCMV_2"
## [1] "NFE2L2_5bp_21bp_mCMV_3"
## [1] "NFE2L2_5bp_21bp_minP_1"
## [1] "NFE2L2_5bp_21bp_minP_2"
## [1] "NFE2L2_5bp_21bp_minP_3"
## [1] "NFE2L2_TF-seq_NA_10bp_mCMV_NA"
## [1] "NFE2L2_TF-seq_NA_10bp_minP_NA"
## [1] "NFE2L2_TF-seq_NA_21bp_mCMV_NA"
## [1] "NFE2L2_TF-seq_NA_21bp_minP_NA"
## [1] "NFE2L2_promega_NA_10bp_mCMV_NA"
## [1] "NFE2L2_promega_NA_10bp_minP_NA"
## [1] "NFE2L2_promega_NA_21bp_mCMV_NA"
## [1] "NFE2L2_promega_NA_21bp_minP_NA"
## [1] "NFE2L2_promega_long_NA_10bp_mCMV_NA"
## [1] "NFE2L2_promega_long_NA_10bp_minP_NA"
## [1] "NFE2L2_romanov_NA_10bp_mCMV_NA"
## [1] "NFE2L2_romanov_NA_10bp_minP_NA"
## [1] "NFE2L2_romanov_NA_21bp_mCMV_NA"
## [1] "NFE2L2_romanov_NA_21bp_minP_NA"
## [1] "NFE2_romanov_NA_10bp_mCMV_NA"
## [1] "NFE2_romanov_NA_10bp_minP_NA"
## [1] "NFE2_romanov_NA_21bp_mCMV_NA"
## [1] "NFE2_romanov_NA_21bp_minP_NA"
## [1] "NFIA_10bp_10bp_mCMV_1"
## [1] "NFIA_10bp_10bp_mCMV_2"
## [1] "NFIA_10bp_10bp_mCMV_3"
## [1] "NFIA_10bp_10bp_minP_1"
## [1] "NFIA_10bp_10bp_minP_2"
## [1] "NFIA_10bp_10bp_minP_3"
## [1] "NFIA_10bp_21bp_Random_1"
## [1] "NFIA_10bp_21bp_mCMV_1"
## [1] "NFIA_10bp_21bp_mCMV_2"
## [1] "NFIA_10bp_21bp_mCMV_3"
## [1] "NFIA_10bp_21bp_minP_1"
## [1] "NFIA_10bp_21bp_minP_2"
## [1] "NFIA_10bp_21bp_minP_3"
## [1] "NFIA_5bp_10bp_mCMV_1"
## [1] "NFIA_5bp_10bp_mCMV_2"
## [1] "NFIA_5bp_10bp_mCMV_3"
## [1] "NFIA_5bp_10bp_minP_1"
## [1] "NFIA_5bp_10bp_minP_2"
## [1] "NFIA_5bp_10bp_minP_3"
## [1] "NFIA_5bp_21bp_mCMV_1"
## [1] "NFIA_5bp_21bp_mCMV_2"
## [1] "NFIA_5bp_21bp_mCMV_3"
## [1] "NFIA_5bp_21bp_minP_1"
## [1] "NFIA_5bp_21bp_minP_2"
## [1] "NFIA_5bp_21bp_minP_3"
## [1] "NFIA_romanov_NA_10bp_mCMV_NA"
## [1] "NFIA_romanov_NA_10bp_minP_NA"
## [1] "NFIA_romanov_NA_21bp_mCMV_NA"
## [1] "NFIA_romanov_NA_21bp_minP_NA"
## [1] "NFKB1_10bp_10bp_hBGm_1"
## [1] "NFKB1_10bp_10bp_hBGm_2"
## [1] "NFKB1_10bp_10bp_hBGm_3"
## [1] "NFKB1_10bp_10bp_mCMV_1"
## [1] "NFKB1_10bp_10bp_mCMV_2"
## [1] "NFKB1_10bp_10bp_mCMV_3"
## [1] "NFKB1_10bp_10bp_minP_1"
## [1] "NFKB1_10bp_10bp_minP_2"
## [1] "NFKB1_10bp_10bp_minP_3"
## [1] "NFKB1_10bp_21bp_Random_1"
## [1] "NFKB1_10bp_21bp_hBGm_1"
## [1] "NFKB1_10bp_21bp_hBGm_2"
## [1] "NFKB1_10bp_21bp_hBGm_3"
## [1] "NFKB1_10bp_21bp_mCMV_1"
## [1] "NFKB1_10bp_21bp_mCMV_2"
## [1] "NFKB1_10bp_21bp_mCMV_3"
## [1] "NFKB1_10bp_21bp_minP_1"
## [1] "NFKB1_10bp_21bp_minP_2"
## [1] "NFKB1_10bp_21bp_minP_3"
## [1] "NFKB1_5bp_10bp_hBGm_1"
## [1] "NFKB1_5bp_10bp_hBGm_2"
## [1] "NFKB1_5bp_10bp_hBGm_3"
## [1] "NFKB1_5bp_10bp_mCMV_1"
## [1] "NFKB1_5bp_10bp_mCMV_2"
## [1] "NFKB1_5bp_10bp_mCMV_3"
## [1] "NFKB1_5bp_10bp_minP_1"
## [1] "NFKB1_5bp_10bp_minP_2"
## [1] "NFKB1_5bp_10bp_minP_3"
## [1] "NFKB1_5bp_21bp_hBGm_1"
## [1] "NFKB1_5bp_21bp_hBGm_2"
## [1] "NFKB1_5bp_21bp_hBGm_3"
## [1] "NFKB1_5bp_21bp_mCMV_1"
## [1] "NFKB1_5bp_21bp_mCMV_2"
## [1] "NFKB1_5bp_21bp_mCMV_3"
## [1] "NFKB1_5bp_21bp_minP_1"
## [1] "NFKB1_5bp_21bp_minP_2"
## [1] "NFKB1_5bp_21bp_minP_3"
## [1] "NFKB1_TF-seq_NA_10bp_mCMV_NA"
## [1] "NFKB1_TF-seq_NA_10bp_minP_NA"
## [1] "NFKB1_TF-seq_NA_21bp_mCMV_NA"
## [1] "NFKB1_TF-seq_NA_21bp_minP_NA"
## [1] "NFKB1_promega_NA_10bp_mCMV_NA"
## [1] "NFKB1_promega_NA_10bp_minP_NA"
## [1] "NFKB1_promega_NA_21bp_mCMV_NA"
## [1] "NFKB1_promega_NA_21bp_minP_NA"
## [1] "NFKB1_promega_long_NA_10bp_mCMV_NA"
## [1] "NFKB1_promega_long_NA_10bp_minP_NA"
## [1] "NFKB1_romanov_NA_10bp_mCMV_NA"
## [1] "NFKB1_romanov_NA_10bp_minP_NA"
## [1] "NFKB1_romanov_NA_21bp_mCMV_NA"
## [1] "NFKB1_romanov_NA_21bp_minP_NA"
## [1] "NFYA_10bp_10bp_hBGm_1"
## [1] "NFYA_10bp_10bp_hBGm_2"
## [1] "NFYA_10bp_10bp_hBGm_3"
## [1] "NFYA_10bp_10bp_mCMV_1"
## [1] "NFYA_10bp_10bp_mCMV_2"
## [1] "NFYA_10bp_10bp_mCMV_3"
## [1] "NFYA_10bp_10bp_minP_1"
## [1] "NFYA_10bp_10bp_minP_2"
## [1] "NFYA_10bp_10bp_minP_3"
## [1] "NFYA_10bp_21bp_Random_1"
## [1] "NFYA_10bp_21bp_hBGm_1"
## [1] "NFYA_10bp_21bp_hBGm_2"
## [1] "NFYA_10bp_21bp_hBGm_3"
## [1] "NFYA_10bp_21bp_mCMV_1"
## [1] "NFYA_10bp_21bp_mCMV_2"
## [1] "NFYA_10bp_21bp_mCMV_3"
## [1] "NFYA_10bp_21bp_minP_1"
## [1] "NFYA_10bp_21bp_minP_2"
## [1] "NFYA_10bp_21bp_minP_3"
## [1] "NFYA_5bp_10bp_hBGm_1"
## [1] "NFYA_5bp_10bp_hBGm_2"
## [1] "NFYA_5bp_10bp_hBGm_3"
## [1] "NFYA_5bp_10bp_mCMV_1"
## [1] "NFYA_5bp_10bp_mCMV_2"
## [1] "NFYA_5bp_10bp_mCMV_3"
## [1] "NFYA_5bp_10bp_minP_1"
## [1] "NFYA_5bp_10bp_minP_2"
## [1] "NFYA_5bp_10bp_minP_3"
## [1] "NFYA_5bp_21bp_hBGm_1"
## [1] "NFYA_5bp_21bp_hBGm_2"
## [1] "NFYA_5bp_21bp_hBGm_3"
## [1] "NFYA_5bp_21bp_mCMV_1"
## [1] "NFYA_5bp_21bp_mCMV_2"
## [1] "NFYA_5bp_21bp_mCMV_3"
## [1] "NFYA_5bp_21bp_minP_1"
## [1] "NFYA_5bp_21bp_minP_2"
## [1] "NFYA_5bp_21bp_minP_3"
## [1] "NFYA_TF-seq_NA_10bp_mCMV_NA"
## [1] "NFYA_TF-seq_NA_10bp_minP_NA"
## [1] "NFYA_TF-seq_NA_21bp_mCMV_NA"
## [1] "NFYA_TF-seq_NA_21bp_minP_NA"
## [1] "NR1D1_10bp_10bp_mCMV_1"
## [1] "NR1D1_10bp_10bp_mCMV_2"
## [1] "NR1D1_10bp_10bp_mCMV_3"
## [1] "NR1D1_10bp_10bp_minP_1"
## [1] "NR1D1_10bp_10bp_minP_2"
## [1] "NR1D1_10bp_10bp_minP_3"
## [1] "NR1D1_10bp_21bp_Random_1"
## [1] "NR1D1_10bp_21bp_mCMV_1"
## [1] "NR1D1_10bp_21bp_mCMV_2"
## [1] "NR1D1_10bp_21bp_mCMV_3"
## [1] "NR1D1_10bp_21bp_minP_1"
## [1] "NR1D1_10bp_21bp_minP_2"
## [1] "NR1D1_10bp_21bp_minP_3"
## [1] "NR1D1_5bp_10bp_mCMV_1"
## [1] "NR1D1_5bp_10bp_mCMV_2"
## [1] "NR1D1_5bp_10bp_mCMV_3"
## [1] "NR1D1_5bp_10bp_minP_1"
## [1] "NR1D1_5bp_10bp_minP_2"
## [1] "NR1D1_5bp_10bp_minP_3"
## [1] "NR1D1_5bp_21bp_mCMV_1"
## [1] "NR1D1_5bp_21bp_mCMV_2"
## [1] "NR1D1_5bp_21bp_mCMV_3"
## [1] "NR1D1_5bp_21bp_minP_1"
## [1] "NR1D1_5bp_21bp_minP_2"
## [1] "NR1D1_5bp_21bp_minP_3"
## [1] "NR1H2_10bp_10bp_mCMV_1"
## [1] "NR1H2_10bp_10bp_mCMV_2"
## [1] "NR1H2_10bp_10bp_mCMV_3"
## [1] "NR1H2_10bp_10bp_minP_1"
## [1] "NR1H2_10bp_10bp_minP_2"
## [1] "NR1H2_10bp_10bp_minP_3"
## [1] "NR1H2_10bp_21bp_Random_1"
## [1] "NR1H2_10bp_21bp_mCMV_1"
## [1] "NR1H2_10bp_21bp_mCMV_2"
## [1] "NR1H2_10bp_21bp_mCMV_3"
## [1] "NR1H2_10bp_21bp_minP_1"
## [1] "NR1H2_10bp_21bp_minP_2"
## [1] "NR1H2_10bp_21bp_minP_3"
## [1] "NR1H2_5bp_10bp_mCMV_1"
## [1] "NR1H2_5bp_10bp_mCMV_2"
## [1] "NR1H2_5bp_10bp_mCMV_3"
## [1] "NR1H2_5bp_10bp_minP_1"
## [1] "NR1H2_5bp_10bp_minP_2"
## [1] "NR1H2_5bp_10bp_minP_3"
## [1] "NR1H2_5bp_21bp_mCMV_1"
## [1] "NR1H2_5bp_21bp_mCMV_2"
## [1] "NR1H2_5bp_21bp_mCMV_3"
## [1] "NR1H2_5bp_21bp_minP_1"
## [1] "NR1H2_5bp_21bp_minP_2"
## [1] "NR1H2_5bp_21bp_minP_3"
## [1] "NR1H2_TF-seq_NA_10bp_mCMV_NA"
## [1] "NR1H2_TF-seq_NA_10bp_minP_NA"
## [1] "NR1H2_TF-seq_NA_21bp_mCMV_NA"
## [1] "NR1H2_TF-seq_NA_21bp_minP_NA"
## [1] "NR1H2_romanov_NA_10bp_mCMV_NA"
## [1] "NR1H2_romanov_NA_10bp_minP_NA"
## [1] "NR1H2_romanov_NA_21bp_mCMV_NA"
## [1] "NR1H2_romanov_NA_21bp_minP_NA"
## [1] "NR1H4::RXRA_10bp_10bp_mCMV_1"
## [1] "NR1H4::RXRA_10bp_10bp_mCMV_2"
## [1] "NR1H4::RXRA_10bp_10bp_mCMV_3"
## [1] "NR1H4::RXRA_10bp_10bp_minP_1"
## [1] "NR1H4::RXRA_10bp_10bp_minP_2"
## [1] "NR1H4::RXRA_10bp_10bp_minP_3"
## [1] "NR1H4::RXRA_10bp_21bp_Random_1"
## [1] "NR1H4::RXRA_10bp_21bp_mCMV_1"
## [1] "NR1H4::RXRA_10bp_21bp_mCMV_2"
## [1] "NR1H4::RXRA_10bp_21bp_mCMV_3"
## [1] "NR1H4::RXRA_10bp_21bp_minP_1"
## [1] "NR1H4::RXRA_10bp_21bp_minP_2"
## [1] "NR1H4::RXRA_10bp_21bp_minP_3"
## [1] "NR1H4::RXRA_5bp_10bp_mCMV_1"
## [1] "NR1H4::RXRA_5bp_10bp_mCMV_2"
## [1] "NR1H4::RXRA_5bp_10bp_mCMV_3"
## [1] "NR1H4::RXRA_5bp_10bp_minP_1"
## [1] "NR1H4::RXRA_5bp_10bp_minP_2"
## [1] "NR1H4::RXRA_5bp_10bp_minP_3"
## [1] "NR1H4::RXRA_5bp_21bp_mCMV_1"
## [1] "NR1H4::RXRA_5bp_21bp_mCMV_2"
## [1] "NR1H4::RXRA_5bp_21bp_mCMV_3"
## [1] "NR1H4::RXRA_5bp_21bp_minP_1"
## [1] "NR1H4::RXRA_5bp_21bp_minP_2"
## [1] "NR1H4::RXRA_5bp_21bp_minP_3"
## [1] "NR1H4::RXRA_TF-seq_NA_10bp_mCMV_NA"
## [1] "NR1H4::RXRA_TF-seq_NA_10bp_minP_NA"
## [1] "NR1H4::RXRA_TF-seq_NA_21bp_mCMV_NA"
## [1] "NR1H4::RXRA_TF-seq_NA_21bp_minP_NA"
## [1] "NR1I2_10bp_10bp_mCMV_1"
## [1] "NR1I2_10bp_10bp_mCMV_2"
## [1] "NR1I2_10bp_10bp_mCMV_3"
## [1] "NR1I2_10bp_10bp_minP_1"
## [1] "NR1I2_10bp_10bp_minP_2"
## [1] "NR1I2_10bp_10bp_minP_3"
## [1] "NR1I2_10bp_21bp_Random_1"
## [1] "NR1I2_10bp_21bp_mCMV_1"
## [1] "NR1I2_10bp_21bp_mCMV_2"
## [1] "NR1I2_10bp_21bp_mCMV_3"
## [1] "NR1I2_10bp_21bp_minP_1"
## [1] "NR1I2_10bp_21bp_minP_2"
## [1] "NR1I2_10bp_21bp_minP_3"
## [1] "NR1I2_5bp_10bp_mCMV_1"
## [1] "NR1I2_5bp_10bp_mCMV_2"
## [1] "NR1I2_5bp_10bp_mCMV_3"
## [1] "NR1I2_5bp_10bp_minP_1"
## [1] "NR1I2_5bp_10bp_minP_2"
## [1] "NR1I2_5bp_10bp_minP_3"
## [1] "NR1I2_5bp_21bp_mCMV_1"
## [1] "NR1I2_5bp_21bp_mCMV_2"
## [1] "NR1I2_5bp_21bp_mCMV_3"
## [1] "NR1I2_5bp_21bp_minP_1"
## [1] "NR1I2_5bp_21bp_minP_2"
## [1] "NR1I2_5bp_21bp_minP_3"
## [1] "NR1I3_10bp_10bp_mCMV_1"
## [1] "NR1I3_10bp_10bp_mCMV_2"
## [1] "NR1I3_10bp_10bp_mCMV_3"
## [1] "NR1I3_10bp_10bp_minP_1"
## [1] "NR1I3_10bp_10bp_minP_2"
## [1] "NR1I3_10bp_10bp_minP_3"
## [1] "NR1I3_10bp_21bp_Random_1"
## [1] "NR1I3_10bp_21bp_mCMV_1"
## [1] "NR1I3_10bp_21bp_mCMV_2"
## [1] "NR1I3_10bp_21bp_mCMV_3"
## [1] "NR1I3_10bp_21bp_minP_1"
## [1] "NR1I3_10bp_21bp_minP_2"
## [1] "NR1I3_10bp_21bp_minP_3"
## [1] "NR1I3_5bp_10bp_mCMV_1"
## [1] "NR1I3_5bp_10bp_mCMV_2"
## [1] "NR1I3_5bp_10bp_mCMV_3"
## [1] "NR1I3_5bp_10bp_minP_1"
## [1] "NR1I3_5bp_10bp_minP_2"
## [1] "NR1I3_5bp_10bp_minP_3"
## [1] "NR1I3_5bp_21bp_mCMV_1"
## [1] "NR1I3_5bp_21bp_mCMV_2"
## [1] "NR1I3_5bp_21bp_mCMV_3"
## [1] "NR1I3_5bp_21bp_minP_1"
## [1] "NR1I3_5bp_21bp_minP_2"
## [1] "NR1I3_5bp_21bp_minP_3"
## [1] "NR1I3_romanov_NA_10bp_mCMV_NA"
## [1] "NR1I3_romanov_NA_10bp_minP_NA"
## [1] "NR1I3_romanov_NA_21bp_mCMV_NA"
## [1] "NR1I3_romanov_NA_21bp_minP_NA"
## [1] "NR2E3_10bp_10bp_mCMV_1"
## [1] "NR2E3_10bp_10bp_mCMV_2"
## [1] "NR2E3_10bp_10bp_mCMV_3"
## [1] "NR2E3_10bp_10bp_minP_1"
## [1] "NR2E3_10bp_10bp_minP_2"
## [1] "NR2E3_10bp_10bp_minP_3"
## [1] "NR2E3_10bp_21bp_Random_1"
## [1] "NR2E3_10bp_21bp_mCMV_1"
## [1] "NR2E3_10bp_21bp_mCMV_2"
## [1] "NR2E3_10bp_21bp_mCMV_3"
## [1] "NR2E3_10bp_21bp_minP_1"
## [1] "NR2E3_10bp_21bp_minP_2"
## [1] "NR2E3_10bp_21bp_minP_3"
## [1] "NR2E3_5bp_10bp_mCMV_1"
## [1] "NR2E3_5bp_10bp_mCMV_2"
## [1] "NR2E3_5bp_10bp_mCMV_3"
## [1] "NR2E3_5bp_10bp_minP_1"
## [1] "NR2E3_5bp_10bp_minP_2"
## [1] "NR2E3_5bp_10bp_minP_3"
## [1] "NR2E3_5bp_21bp_mCMV_1"
## [1] "NR2E3_5bp_21bp_mCMV_2"
## [1] "NR2E3_5bp_21bp_mCMV_3"
## [1] "NR2E3_5bp_21bp_minP_1"
## [1] "NR2E3_5bp_21bp_minP_2"
## [1] "NR2E3_5bp_21bp_minP_3"
## [1] "NR3C1_10bp_10bp_hBGm_1"
## [1] "NR3C1_10bp_10bp_hBGm_2"
## [1] "NR3C1_10bp_10bp_hBGm_3"
## [1] "NR3C1_10bp_10bp_mCMV_1"
## [1] "NR3C1_10bp_10bp_mCMV_2"
## [1] "NR3C1_10bp_10bp_mCMV_3"
## [1] "NR3C1_10bp_10bp_minP_1"
## [1] "NR3C1_10bp_10bp_minP_2"
## [1] "NR3C1_10bp_10bp_minP_3"
## [1] "NR3C1_10bp_21bp_Random_1"
## [1] "NR3C1_10bp_21bp_hBGm_1"
## [1] "NR3C1_10bp_21bp_hBGm_2"
## [1] "NR3C1_10bp_21bp_hBGm_3"
## [1] "NR3C1_10bp_21bp_mCMV_1"
## [1] "NR3C1_10bp_21bp_mCMV_2"
## [1] "NR3C1_10bp_21bp_mCMV_3"
## [1] "NR3C1_10bp_21bp_minP_1"
## [1] "NR3C1_10bp_21bp_minP_2"
## [1] "NR3C1_10bp_21bp_minP_3"
## [1] "NR3C1_5bp_10bp_hBGm_1"
## [1] "NR3C1_5bp_10bp_hBGm_2"
## [1] "NR3C1_5bp_10bp_hBGm_3"
## [1] "NR3C1_5bp_10bp_mCMV_1"
## [1] "NR3C1_5bp_10bp_mCMV_2"
## [1] "NR3C1_5bp_10bp_mCMV_3"
## [1] "NR3C1_5bp_10bp_minP_1"
## [1] "NR3C1_5bp_10bp_minP_2"
## [1] "NR3C1_5bp_10bp_minP_3"
## [1] "NR3C1_5bp_21bp_hBGm_1"
## [1] "NR3C1_5bp_21bp_hBGm_2"
## [1] "NR3C1_5bp_21bp_hBGm_3"
## [1] "NR3C1_5bp_21bp_mCMV_1"
## [1] "NR3C1_5bp_21bp_mCMV_2"
## [1] "NR3C1_5bp_21bp_mCMV_3"
## [1] "NR3C1_5bp_21bp_minP_1"
## [1] "NR3C1_5bp_21bp_minP_2"
## [1] "NR3C1_5bp_21bp_minP_3"
## [1] "NR3C1_TF-seq_NA_10bp_mCMV_NA"
## [1] "NR3C1_TF-seq_NA_10bp_minP_NA"
## [1] "NR3C1_TF-seq_NA_21bp_mCMV_NA"
## [1] "NR3C1_TF-seq_NA_21bp_minP_NA"
## [1] "NR3C1_romanov_NA_10bp_mCMV_NA"
## [1] "NR3C1_romanov_NA_10bp_minP_NA"
## [1] "NR3C1_romanov_NA_21bp_mCMV_NA"
## [1] "NR3C1_romanov_NA_21bp_minP_NA"
## [1] "NR3C2_10bp_10bp_mCMV_1"
## [1] "NR3C2_10bp_10bp_mCMV_2"
## [1] "NR3C2_10bp_10bp_mCMV_3"
## [1] "NR3C2_10bp_10bp_minP_1"
## [1] "NR3C2_10bp_10bp_minP_2"
## [1] "NR3C2_10bp_10bp_minP_3"
## [1] "NR3C2_10bp_21bp_Random_1"
## [1] "NR3C2_10bp_21bp_mCMV_1"
## [1] "NR3C2_10bp_21bp_mCMV_2"
## [1] "NR3C2_10bp_21bp_mCMV_3"
## [1] "NR3C2_10bp_21bp_minP_1"
## [1] "NR3C2_10bp_21bp_minP_2"
## [1] "NR3C2_10bp_21bp_minP_3"
## [1] "NR3C2_5bp_10bp_mCMV_1"
## [1] "NR3C2_5bp_10bp_mCMV_2"
## [1] "NR3C2_5bp_10bp_mCMV_3"
## [1] "NR3C2_5bp_10bp_minP_1"
## [1] "NR3C2_5bp_10bp_minP_2"
## [1] "NR3C2_5bp_10bp_minP_3"
## [1] "NR3C2_5bp_21bp_mCMV_1"
## [1] "NR3C2_5bp_21bp_mCMV_2"
## [1] "NR3C2_5bp_21bp_mCMV_3"
## [1] "NR3C2_5bp_21bp_minP_1"
## [1] "NR3C2_5bp_21bp_minP_2"
## [1] "NR3C2_5bp_21bp_minP_3"
## [1] "NR3C2_romanov_NA_10bp_mCMV_NA"
## [1] "NR3C2_romanov_NA_10bp_minP_NA"
## [1] "NR3C2_romanov_NA_21bp_mCMV_NA"
## [1] "NR3C2_romanov_NA_21bp_minP_NA"
## [1] "NR4A1_10bp_10bp_mCMV_1"
## [1] "NR4A1_10bp_10bp_mCMV_2"
## [1] "NR4A1_10bp_10bp_mCMV_3"
## [1] "NR4A1_10bp_10bp_minP_1"
## [1] "NR4A1_10bp_10bp_minP_2"
## [1] "NR4A1_10bp_10bp_minP_3"
## [1] "NR4A1_10bp_21bp_Random_1"
## [1] "NR4A1_10bp_21bp_mCMV_1"
## [1] "NR4A1_10bp_21bp_mCMV_2"
## [1] "NR4A1_10bp_21bp_mCMV_3"
## [1] "NR4A1_10bp_21bp_minP_1"
## [1] "NR4A1_10bp_21bp_minP_2"
## [1] "NR4A1_10bp_21bp_minP_3"
## [1] "NR4A1_5bp_10bp_mCMV_1"
## [1] "NR4A1_5bp_10bp_mCMV_2"
## [1] "NR4A1_5bp_10bp_mCMV_3"
## [1] "NR4A1_5bp_10bp_minP_1"
## [1] "NR4A1_5bp_10bp_minP_2"
## [1] "NR4A1_5bp_10bp_minP_3"
## [1] "NR4A1_5bp_21bp_mCMV_1"
## [1] "NR4A1_5bp_21bp_mCMV_2"
## [1] "NR4A1_5bp_21bp_mCMV_3"
## [1] "NR4A1_5bp_21bp_minP_1"
## [1] "NR4A1_5bp_21bp_minP_2"
## [1] "NR4A1_5bp_21bp_minP_3"
## [1] "NR4A2::RXRA_10bp_10bp_mCMV_1"
## [1] "NR4A2::RXRA_10bp_10bp_mCMV_2"
## [1] "NR4A2::RXRA_10bp_10bp_mCMV_3"
## [1] "NR4A2::RXRA_10bp_10bp_minP_1"
## [1] "NR4A2::RXRA_10bp_10bp_minP_2"
## [1] "NR4A2::RXRA_10bp_10bp_minP_3"
## [1] "NR4A2::RXRA_10bp_21bp_Random_1"
## [1] "NR4A2::RXRA_10bp_21bp_mCMV_1"
## [1] "NR4A2::RXRA_10bp_21bp_mCMV_2"
## [1] "NR4A2::RXRA_10bp_21bp_mCMV_3"
## [1] "NR4A2::RXRA_10bp_21bp_minP_1"
## [1] "NR4A2::RXRA_10bp_21bp_minP_2"
## [1] "NR4A2::RXRA_10bp_21bp_minP_3"
## [1] "NR4A2::RXRA_5bp_10bp_mCMV_1"
## [1] "NR4A2::RXRA_5bp_10bp_mCMV_2"
## [1] "NR4A2::RXRA_5bp_10bp_mCMV_3"
## [1] "NR4A2::RXRA_5bp_10bp_minP_1"
## [1] "NR4A2::RXRA_5bp_10bp_minP_2"
## [1] "NR4A2::RXRA_5bp_10bp_minP_3"
## [1] "NR4A2::RXRA_5bp_21bp_mCMV_1"
## [1] "NR4A2::RXRA_5bp_21bp_mCMV_2"
## [1] "NR4A2::RXRA_5bp_21bp_mCMV_3"
## [1] "NR4A2::RXRA_5bp_21bp_minP_1"
## [1] "NR4A2::RXRA_5bp_21bp_minP_2"
## [1] "NR4A2::RXRA_5bp_21bp_minP_3"
## [1] "NR5A2_10bp_10bp_mCMV_1"
## [1] "NR5A2_10bp_10bp_mCMV_2"
## [1] "NR5A2_10bp_10bp_mCMV_3"
## [1] "NR5A2_10bp_10bp_minP_1"
## [1] "NR5A2_10bp_10bp_minP_2"
## [1] "NR5A2_10bp_10bp_minP_3"
## [1] "NR5A2_10bp_21bp_Random_1"
## [1] "NR5A2_10bp_21bp_mCMV_1"
## [1] "NR5A2_10bp_21bp_mCMV_2"
## [1] "NR5A2_10bp_21bp_mCMV_3"
## [1] "NR5A2_10bp_21bp_minP_1"
## [1] "NR5A2_10bp_21bp_minP_2"
## [1] "NR5A2_10bp_21bp_minP_3"
## [1] "NR5A2_5bp_10bp_mCMV_1"
## [1] "NR5A2_5bp_10bp_mCMV_2"
## [1] "NR5A2_5bp_10bp_mCMV_3"
## [1] "NR5A2_5bp_10bp_minP_1"
## [1] "NR5A2_5bp_10bp_minP_2"
## [1] "NR5A2_5bp_10bp_minP_3"
## [1] "NR5A2_5bp_21bp_mCMV_1"
## [1] "NR5A2_5bp_21bp_mCMV_2"
## [1] "NR5A2_5bp_21bp_mCMV_3"
## [1] "NR5A2_5bp_21bp_minP_1"
## [1] "NR5A2_5bp_21bp_minP_2"
## [1] "NR5A2_5bp_21bp_minP_3"
## [1] "NRF1_10bp_10bp_mCMV_1"
## [1] "NRF1_10bp_10bp_mCMV_2"
## [1] "NRF1_10bp_10bp_mCMV_3"
## [1] "NRF1_10bp_10bp_minP_1"
## [1] "NRF1_10bp_10bp_minP_2"
## [1] "NRF1_10bp_10bp_minP_3"
## [1] "NRF1_10bp_21bp_Random_1"
## [1] "NRF1_10bp_21bp_mCMV_1"
## [1] "NRF1_10bp_21bp_mCMV_2"
## [1] "NRF1_10bp_21bp_mCMV_3"
## [1] "NRF1_10bp_21bp_minP_1"
## [1] "NRF1_10bp_21bp_minP_2"
## [1] "NRF1_10bp_21bp_minP_3"
## [1] "NRF1_5bp_10bp_mCMV_1"
## [1] "NRF1_5bp_10bp_mCMV_2"
## [1] "NRF1_5bp_10bp_mCMV_3"
## [1] "NRF1_5bp_10bp_minP_1"
## [1] "NRF1_5bp_10bp_minP_2"
## [1] "NRF1_5bp_10bp_minP_3"
## [1] "NRF1_5bp_21bp_mCMV_1"
## [1] "NRF1_5bp_21bp_mCMV_2"
## [1] "NRF1_5bp_21bp_mCMV_3"
## [1] "NRF1_5bp_21bp_minP_1"
## [1] "NRF1_5bp_21bp_minP_2"
## [1] "NRF1_5bp_21bp_minP_3"
## [1] "ONECUT1_10bp_10bp_mCMV_1"
## [1] "ONECUT1_10bp_10bp_mCMV_2"
## [1] "ONECUT1_10bp_10bp_mCMV_3"
## [1] "ONECUT1_10bp_10bp_minP_1"
## [1] "ONECUT1_10bp_10bp_minP_2"
## [1] "ONECUT1_10bp_10bp_minP_3"
## [1] "ONECUT1_10bp_21bp_Random_1"
## [1] "ONECUT1_10bp_21bp_mCMV_1"
## [1] "ONECUT1_10bp_21bp_mCMV_2"
## [1] "ONECUT1_10bp_21bp_mCMV_3"
## [1] "ONECUT1_10bp_21bp_minP_1"
## [1] "ONECUT1_10bp_21bp_minP_2"
## [1] "ONECUT1_10bp_21bp_minP_3"
## [1] "ONECUT1_5bp_10bp_mCMV_1"
## [1] "ONECUT1_5bp_10bp_mCMV_2"
## [1] "ONECUT1_5bp_10bp_mCMV_3"
## [1] "ONECUT1_5bp_10bp_minP_1"
## [1] "ONECUT1_5bp_10bp_minP_2"
## [1] "ONECUT1_5bp_10bp_minP_3"
## [1] "ONECUT1_5bp_21bp_mCMV_1"
## [1] "ONECUT1_5bp_21bp_mCMV_2"
## [1] "ONECUT1_5bp_21bp_mCMV_3"
## [1] "ONECUT1_5bp_21bp_minP_1"
## [1] "ONECUT1_5bp_21bp_minP_2"
## [1] "ONECUT1_5bp_21bp_minP_3"
## [1] "ONECUT1_romanov_NA_10bp_mCMV_NA"
## [1] "ONECUT1_romanov_NA_10bp_minP_NA"
## [1] "ONECUT1_romanov_NA_21bp_mCMV_NA"
## [1] "ONECUT1_romanov_NA_21bp_minP_NA"
## [1] "OTX1_10bp_10bp_hBGm_1"
## [1] "OTX1_10bp_10bp_hBGm_2"
## [1] "OTX1_10bp_10bp_hBGm_3"
## [1] "OTX1_10bp_10bp_mCMV_1"
## [1] "OTX1_10bp_10bp_mCMV_2"
## [1] "OTX1_10bp_10bp_mCMV_3"
## [1] "OTX1_10bp_10bp_minP_1"
## [1] "OTX1_10bp_10bp_minP_2"
## [1] "OTX1_10bp_10bp_minP_3"
## [1] "OTX1_10bp_21bp_Random_1"
## [1] "OTX1_10bp_21bp_hBGm_1"
## [1] "OTX1_10bp_21bp_hBGm_2"
## [1] "OTX1_10bp_21bp_hBGm_3"
## [1] "OTX1_10bp_21bp_mCMV_1"
## [1] "OTX1_10bp_21bp_mCMV_2"
## [1] "OTX1_10bp_21bp_mCMV_3"
## [1] "OTX1_10bp_21bp_minP_1"
## [1] "OTX1_10bp_21bp_minP_2"
## [1] "OTX1_10bp_21bp_minP_3"
## [1] "OTX1_5bp_10bp_hBGm_1"
## [1] "OTX1_5bp_10bp_hBGm_2"
## [1] "OTX1_5bp_10bp_hBGm_3"
## [1] "OTX1_5bp_10bp_mCMV_1"
## [1] "OTX1_5bp_10bp_mCMV_2"
## [1] "OTX1_5bp_10bp_mCMV_3"
## [1] "OTX1_5bp_10bp_minP_1"
## [1] "OTX1_5bp_10bp_minP_2"
## [1] "OTX1_5bp_10bp_minP_3"
## [1] "OTX1_5bp_21bp_hBGm_1"
## [1] "OTX1_5bp_21bp_hBGm_2"
## [1] "OTX1_5bp_21bp_hBGm_3"
## [1] "OTX1_5bp_21bp_mCMV_1"
## [1] "OTX1_5bp_21bp_mCMV_2"
## [1] "OTX1_5bp_21bp_mCMV_3"
## [1] "OTX1_5bp_21bp_minP_1"
## [1] "OTX1_5bp_21bp_minP_2"
## [1] "OTX1_5bp_21bp_minP_3"
## [1] "PAX6_10bp_10bp_hBGm_1"
## [1] "PAX6_10bp_10bp_hBGm_2"
## [1] "PAX6_10bp_10bp_hBGm_3"
## [1] "PAX6_10bp_10bp_mCMV_1"
## [1] "PAX6_10bp_10bp_mCMV_2"
## [1] "PAX6_10bp_10bp_mCMV_3"
## [1] "PAX6_10bp_10bp_minP_1"
## [1] "PAX6_10bp_10bp_minP_2"
## [1] "PAX6_10bp_10bp_minP_3"
## [1] "PAX6_10bp_21bp_Random_1"
## [1] "PAX6_10bp_21bp_hBGm_1"
## [1] "PAX6_10bp_21bp_hBGm_2"
## [1] "PAX6_10bp_21bp_hBGm_3"
## [1] "PAX6_10bp_21bp_mCMV_1"
## [1] "PAX6_10bp_21bp_mCMV_2"
## [1] "PAX6_10bp_21bp_mCMV_3"
## [1] "PAX6_10bp_21bp_minP_1"
## [1] "PAX6_10bp_21bp_minP_2"
## [1] "PAX6_10bp_21bp_minP_3"
## [1] "PAX6_5bp_10bp_hBGm_1"
## [1] "PAX6_5bp_10bp_hBGm_2"
## [1] "PAX6_5bp_10bp_hBGm_3"
## [1] "PAX6_5bp_10bp_mCMV_1"
## [1] "PAX6_5bp_10bp_mCMV_2"
## [1] "PAX6_5bp_10bp_mCMV_3"
## [1] "PAX6_5bp_10bp_minP_1"
## [1] "PAX6_5bp_10bp_minP_2"
## [1] "PAX6_5bp_10bp_minP_3"
## [1] "PAX6_5bp_21bp_hBGm_1"
## [1] "PAX6_5bp_21bp_hBGm_2"
## [1] "PAX6_5bp_21bp_hBGm_3"
## [1] "PAX6_5bp_21bp_mCMV_1"
## [1] "PAX6_5bp_21bp_mCMV_2"
## [1] "PAX6_5bp_21bp_mCMV_3"
## [1] "PAX6_5bp_21bp_minP_1"
## [1] "PAX6_5bp_21bp_minP_2"
## [1] "PAX6_5bp_21bp_minP_3"
## [1] "PAX6_romanov_NA_10bp_mCMV_NA"
## [1] "PAX6_romanov_NA_10bp_minP_NA"
## [1] "PAX6_romanov_NA_21bp_mCMV_NA"
## [1] "PAX6_romanov_NA_21bp_minP_NA"
## [1] "PGR_10bp_10bp_mCMV_1"
## [1] "PGR_10bp_10bp_mCMV_2"
## [1] "PGR_10bp_10bp_mCMV_3"
## [1] "PGR_10bp_10bp_minP_1"
## [1] "PGR_10bp_10bp_minP_2"
## [1] "PGR_10bp_10bp_minP_3"
## [1] "PGR_10bp_21bp_Random_1"
## [1] "PGR_10bp_21bp_mCMV_1"
## [1] "PGR_10bp_21bp_mCMV_2"
## [1] "PGR_10bp_21bp_mCMV_3"
## [1] "PGR_10bp_21bp_minP_1"
## [1] "PGR_10bp_21bp_minP_2"
## [1] "PGR_10bp_21bp_minP_3"
## [1] "PGR_5bp_10bp_mCMV_1"
## [1] "PGR_5bp_10bp_mCMV_2"
## [1] "PGR_5bp_10bp_mCMV_3"
## [1] "PGR_5bp_10bp_minP_1"
## [1] "PGR_5bp_10bp_minP_2"
## [1] "PGR_5bp_10bp_minP_3"
## [1] "PGR_5bp_21bp_mCMV_1"
## [1] "PGR_5bp_21bp_mCMV_2"
## [1] "PGR_5bp_21bp_mCMV_3"
## [1] "PGR_5bp_21bp_minP_1"
## [1] "PGR_5bp_21bp_minP_2"
## [1] "PGR_5bp_21bp_minP_3"
## [1] "POU2F1_10bp_10bp_mCMV_1"
## [1] "POU2F1_10bp_10bp_mCMV_2"
## [1] "POU2F1_10bp_10bp_mCMV_3"
## [1] "POU2F1_10bp_10bp_minP_1"
## [1] "POU2F1_10bp_10bp_minP_2"
## [1] "POU2F1_10bp_10bp_minP_3"
## [1] "POU2F1_10bp_21bp_Random_1"
## [1] "POU2F1_10bp_21bp_mCMV_1"
## [1] "POU2F1_10bp_21bp_mCMV_2"
## [1] "POU2F1_10bp_21bp_mCMV_3"
## [1] "POU2F1_10bp_21bp_minP_1"
## [1] "POU2F1_10bp_21bp_minP_2"
## [1] "POU2F1_10bp_21bp_minP_3"
## [1] "POU2F1_5bp_10bp_mCMV_1"
## [1] "POU2F1_5bp_10bp_mCMV_2"
## [1] "POU2F1_5bp_10bp_mCMV_3"
## [1] "POU2F1_5bp_10bp_minP_1"
## [1] "POU2F1_5bp_10bp_minP_2"
## [1] "POU2F1_5bp_10bp_minP_3"
## [1] "POU2F1_5bp_21bp_mCMV_1"
## [1] "POU2F1_5bp_21bp_mCMV_2"
## [1] "POU2F1_5bp_21bp_mCMV_3"
## [1] "POU2F1_5bp_21bp_minP_1"
## [1] "POU2F1_5bp_21bp_minP_2"
## [1] "POU2F1_5bp_21bp_minP_3"
## [1] "POU2F1_romanov_NA_10bp_mCMV_NA"
## [1] "POU2F1_romanov_NA_10bp_minP_NA"
## [1] "POU2F1_romanov_NA_21bp_mCMV_NA"
## [1] "POU2F1_romanov_NA_21bp_minP_NA"
## [1] "POU5F1::SOX2_10bp_10bp_mCMV_1"
## [1] "POU5F1::SOX2_10bp_10bp_mCMV_2"
## [1] "POU5F1::SOX2_10bp_10bp_mCMV_3"
## [1] "POU5F1::SOX2_10bp_10bp_minP_1"
## [1] "POU5F1::SOX2_10bp_10bp_minP_2"
## [1] "POU5F1::SOX2_10bp_10bp_minP_3"
## [1] "POU5F1::SOX2_10bp_21bp_Random_1"
## [1] "POU5F1::SOX2_10bp_21bp_mCMV_1"
## [1] "POU5F1::SOX2_10bp_21bp_mCMV_2"
## [1] "POU5F1::SOX2_10bp_21bp_mCMV_3"
## [1] "POU5F1::SOX2_10bp_21bp_minP_1"
## [1] "POU5F1::SOX2_10bp_21bp_minP_2"
## [1] "POU5F1::SOX2_10bp_21bp_minP_3"
## [1] "POU5F1::SOX2_5bp_10bp_mCMV_1"
## [1] "POU5F1::SOX2_5bp_10bp_mCMV_2"
## [1] "POU5F1::SOX2_5bp_10bp_mCMV_3"
## [1] "POU5F1::SOX2_5bp_10bp_minP_1"
## [1] "POU5F1::SOX2_5bp_10bp_minP_2"
## [1] "POU5F1::SOX2_5bp_10bp_minP_3"
## [1] "POU5F1::SOX2_5bp_21bp_mCMV_1"
## [1] "POU5F1::SOX2_5bp_21bp_mCMV_2"
## [1] "POU5F1::SOX2_5bp_21bp_mCMV_3"
## [1] "POU5F1::SOX2_5bp_21bp_minP_1"
## [1] "POU5F1::SOX2_5bp_21bp_minP_2"
## [1] "POU5F1::SOX2_5bp_21bp_minP_3"
## [1] "POU5F1_10bp_10bp_mCMV_1"
## [1] "POU5F1_10bp_10bp_mCMV_2"
## [1] "POU5F1_10bp_10bp_mCMV_3"
## [1] "POU5F1_10bp_10bp_minP_1"
## [1] "POU5F1_10bp_10bp_minP_2"
## [1] "POU5F1_10bp_10bp_minP_3"
## [1] "POU5F1_10bp_21bp_Random_1"
## [1] "POU5F1_10bp_21bp_mCMV_1"
## [1] "POU5F1_10bp_21bp_mCMV_2"
## [1] "POU5F1_10bp_21bp_mCMV_3"
## [1] "POU5F1_10bp_21bp_minP_1"
## [1] "POU5F1_10bp_21bp_minP_2"
## [1] "POU5F1_10bp_21bp_minP_3"
## [1] "POU5F1_5bp_10bp_mCMV_1"
## [1] "POU5F1_5bp_10bp_mCMV_2"
## [1] "POU5F1_5bp_10bp_mCMV_3"
## [1] "POU5F1_5bp_10bp_minP_1"
## [1] "POU5F1_5bp_10bp_minP_2"
## [1] "POU5F1_5bp_10bp_minP_3"
## [1] "POU5F1_5bp_21bp_mCMV_1"
## [1] "POU5F1_5bp_21bp_mCMV_2"
## [1] "POU5F1_5bp_21bp_mCMV_3"
## [1] "POU5F1_5bp_21bp_minP_1"
## [1] "POU5F1_5bp_21bp_minP_2"
## [1] "POU5F1_5bp_21bp_minP_3"
## [1] "PPARA::RXRA_10bp_10bp_mCMV_1"
## [1] "PPARA::RXRA_10bp_10bp_mCMV_2"
## [1] "PPARA::RXRA_10bp_10bp_mCMV_3"
## [1] "PPARA::RXRA_10bp_10bp_minP_1"
## [1] "PPARA::RXRA_10bp_10bp_minP_2"
## [1] "PPARA::RXRA_10bp_10bp_minP_3"
## [1] "PPARA::RXRA_10bp_21bp_Random_1"
## [1] "PPARA::RXRA_10bp_21bp_mCMV_1"
## [1] "PPARA::RXRA_10bp_21bp_mCMV_2"
## [1] "PPARA::RXRA_10bp_21bp_mCMV_3"
## [1] "PPARA::RXRA_10bp_21bp_minP_1"
## [1] "PPARA::RXRA_10bp_21bp_minP_2"
## [1] "PPARA::RXRA_10bp_21bp_minP_3"
## [1] "PPARA::RXRA_5bp_10bp_mCMV_1"
## [1] "PPARA::RXRA_5bp_10bp_mCMV_2"
## [1] "PPARA::RXRA_5bp_10bp_mCMV_3"
## [1] "PPARA::RXRA_5bp_10bp_minP_1"
## [1] "PPARA::RXRA_5bp_10bp_minP_2"
## [1] "PPARA::RXRA_5bp_10bp_minP_3"
## [1] "PPARA::RXRA_5bp_21bp_mCMV_1"
## [1] "PPARA::RXRA_5bp_21bp_mCMV_2"
## [1] "PPARA::RXRA_5bp_21bp_mCMV_3"
## [1] "PPARA::RXRA_5bp_21bp_minP_1"
## [1] "PPARA::RXRA_5bp_21bp_minP_2"
## [1] "PPARA::RXRA_5bp_21bp_minP_3"
## [1] "PPARA::RXRA_romanov_NA_10bp_mCMV_NA"
## [1] "PPARA::RXRA_romanov_NA_10bp_minP_NA"
## [1] "PPARA::RXRA_romanov_NA_21bp_mCMV_NA"
## [1] "PPARA::RXRA_romanov_NA_21bp_minP_NA"
## [1] "PPARG::PPARG_TF-seq_NA_10bp_mCMV_NA"
## [1] "PPARG::PPARG_TF-seq_NA_10bp_minP_NA"
## [1] "PPARG::PPARG_TF-seq_NA_21bp_mCMV_NA"
## [1] "PPARG::PPARG_TF-seq_NA_21bp_minP_NA"
## [1] "PPARG::RXRA_10bp_10bp_mCMV_1"
## [1] "PPARG::RXRA_10bp_10bp_mCMV_2"
## [1] "PPARG::RXRA_10bp_10bp_mCMV_3"
## [1] "PPARG::RXRA_10bp_10bp_minP_1"
## [1] "PPARG::RXRA_10bp_10bp_minP_2"
## [1] "PPARG::RXRA_10bp_10bp_minP_3"
## [1] "PPARG::RXRA_10bp_21bp_Random_1"
## [1] "PPARG::RXRA_10bp_21bp_mCMV_1"
## [1] "PPARG::RXRA_10bp_21bp_mCMV_2"
## [1] "PPARG::RXRA_10bp_21bp_mCMV_3"
## [1] "PPARG::RXRA_10bp_21bp_minP_1"
## [1] "PPARG::RXRA_10bp_21bp_minP_2"
## [1] "PPARG::RXRA_10bp_21bp_minP_3"
## [1] "PPARG::RXRA_2_TF-seq_NA_10bp_mCMV_NA"
## [1] "PPARG::RXRA_2_TF-seq_NA_10bp_minP_NA"
## [1] "PPARG::RXRA_2_TF-seq_NA_21bp_mCMV_NA"
## [1] "PPARG::RXRA_2_TF-seq_NA_21bp_minP_NA"
## [1] "PPARG::RXRA_5bp_10bp_mCMV_1"
## [1] "PPARG::RXRA_5bp_10bp_mCMV_2"
## [1] "PPARG::RXRA_5bp_10bp_mCMV_3"
## [1] "PPARG::RXRA_5bp_10bp_minP_1"
## [1] "PPARG::RXRA_5bp_10bp_minP_2"
## [1] "PPARG::RXRA_5bp_10bp_minP_3"
## [1] "PPARG::RXRA_5bp_21bp_mCMV_1"
## [1] "PPARG::RXRA_5bp_21bp_mCMV_2"
## [1] "PPARG::RXRA_5bp_21bp_mCMV_3"
## [1] "PPARG::RXRA_5bp_21bp_minP_1"
## [1] "PPARG::RXRA_5bp_21bp_minP_2"
## [1] "PPARG::RXRA_5bp_21bp_minP_3"
## [1] "PPARG::RXRA_TF-seq_NA_10bp_mCMV_NA"
## [1] "PPARG::RXRA_TF-seq_NA_10bp_minP_NA"
## [1] "PPARG::RXRA_TF-seq_NA_21bp_mCMV_NA"
## [1] "PPARG::RXRA_TF-seq_NA_21bp_minP_NA"
## [1] "RANDOM1_10bp_10bp_hBGm_1"
## [1] "RANDOM1_10bp_10bp_hBGm_2"
## [1] "RANDOM1_10bp_10bp_hBGm_3"
## [1] "RANDOM1_10bp_10bp_mCMV_1"
## [1] "RANDOM1_10bp_10bp_mCMV_2"
## [1] "RANDOM1_10bp_10bp_mCMV_3"
## [1] "RANDOM1_10bp_10bp_minP_1"
## [1] "RANDOM1_10bp_10bp_minP_2"
## [1] "RANDOM1_10bp_10bp_minP_3"
## [1] "RANDOM1_10bp_21bp_Random_1"
## [1] "RANDOM1_10bp_21bp_hBGm_1"
## [1] "RANDOM1_10bp_21bp_hBGm_2"
## [1] "RANDOM1_10bp_21bp_hBGm_3"
## [1] "RANDOM1_10bp_21bp_mCMV_1"
## [1] "RANDOM1_10bp_21bp_mCMV_2"
## [1] "RANDOM1_10bp_21bp_mCMV_3"
## [1] "RANDOM1_10bp_21bp_minP_1"
## [1] "RANDOM1_10bp_21bp_minP_2"
## [1] "RANDOM1_10bp_21bp_minP_3"
## [1] "RANDOM1_5bp_10bp_hBGm_1"
## [1] "RANDOM1_5bp_10bp_hBGm_2"
## [1] "RANDOM1_5bp_10bp_hBGm_3"
## [1] "RANDOM1_5bp_10bp_mCMV_1"
## [1] "RANDOM1_5bp_10bp_mCMV_2"
## [1] "RANDOM1_5bp_10bp_mCMV_3"
## [1] "RANDOM1_5bp_10bp_minP_1"
## [1] "RANDOM1_5bp_10bp_minP_2"
## [1] "RANDOM1_5bp_10bp_minP_3"
## [1] "RANDOM1_5bp_21bp_hBGm_1"
## [1] "RANDOM1_5bp_21bp_hBGm_2"
## [1] "RANDOM1_5bp_21bp_hBGm_3"
## [1] "RANDOM1_5bp_21bp_mCMV_1"
## [1] "RANDOM1_5bp_21bp_mCMV_2"
## [1] "RANDOM1_5bp_21bp_mCMV_3"
## [1] "RANDOM1_5bp_21bp_minP_1"
## [1] "RANDOM1_5bp_21bp_minP_2"
## [1] "RANDOM1_5bp_21bp_minP_3"
## [1] "RANDOM2_10bp_10bp_hBGm_1"
## [1] "RANDOM2_10bp_10bp_hBGm_2"
## [1] "RANDOM2_10bp_10bp_hBGm_3"
## [1] "RANDOM2_10bp_10bp_mCMV_1"
## [1] "RANDOM2_10bp_10bp_mCMV_2"
## [1] "RANDOM2_10bp_10bp_mCMV_3"
## [1] "RANDOM2_10bp_10bp_minP_1"
## [1] "RANDOM2_10bp_10bp_minP_2"
## [1] "RANDOM2_10bp_10bp_minP_3"
## [1] "RANDOM2_10bp_21bp_Random_1"
## [1] "RANDOM2_10bp_21bp_hBGm_1"
## [1] "RANDOM2_10bp_21bp_hBGm_2"
## [1] "RANDOM2_10bp_21bp_hBGm_3"
## [1] "RANDOM2_10bp_21bp_mCMV_1"
## [1] "RANDOM2_10bp_21bp_mCMV_2"
## [1] "RANDOM2_10bp_21bp_mCMV_3"
## [1] "RANDOM2_10bp_21bp_minP_1"
## [1] "RANDOM2_10bp_21bp_minP_2"
## [1] "RANDOM2_10bp_21bp_minP_3"
## [1] "RANDOM2_5bp_10bp_hBGm_1"
## [1] "RANDOM2_5bp_10bp_hBGm_2"
## [1] "RANDOM2_5bp_10bp_hBGm_3"
## [1] "RANDOM2_5bp_10bp_mCMV_1"
## [1] "RANDOM2_5bp_10bp_mCMV_2"
## [1] "RANDOM2_5bp_10bp_mCMV_3"
## [1] "RANDOM2_5bp_10bp_minP_1"
## [1] "RANDOM2_5bp_10bp_minP_2"
## [1] "RANDOM2_5bp_10bp_minP_3"
## [1] "RANDOM2_5bp_21bp_hBGm_1"
## [1] "RANDOM2_5bp_21bp_hBGm_2"
## [1] "RANDOM2_5bp_21bp_hBGm_3"
## [1] "RANDOM2_5bp_21bp_mCMV_1"
## [1] "RANDOM2_5bp_21bp_mCMV_2"
## [1] "RANDOM2_5bp_21bp_mCMV_3"
## [1] "RANDOM2_5bp_21bp_minP_1"
## [1] "RANDOM2_5bp_21bp_minP_2"
## [1] "RANDOM2_5bp_21bp_minP_3"
## [1] "RANDOM3_10bp_10bp_hBGm_1"
## [1] "RANDOM3_10bp_10bp_hBGm_2"
## [1] "RANDOM3_10bp_10bp_hBGm_3"
## [1] "RANDOM3_10bp_10bp_mCMV_1"
## [1] "RANDOM3_10bp_10bp_mCMV_2"
## [1] "RANDOM3_10bp_10bp_mCMV_3"
## [1] "RANDOM3_10bp_10bp_minP_1"
## [1] "RANDOM3_10bp_10bp_minP_2"
## [1] "RANDOM3_10bp_10bp_minP_3"
## [1] "RANDOM3_10bp_21bp_Random_1"
## [1] "RANDOM3_10bp_21bp_hBGm_1"
## [1] "RANDOM3_10bp_21bp_hBGm_2"
## [1] "RANDOM3_10bp_21bp_hBGm_3"
## [1] "RANDOM3_10bp_21bp_mCMV_1"
## [1] "RANDOM3_10bp_21bp_mCMV_2"
## [1] "RANDOM3_10bp_21bp_mCMV_3"
## [1] "RANDOM3_10bp_21bp_minP_1"
## [1] "RANDOM3_10bp_21bp_minP_2"
## [1] "RANDOM3_10bp_21bp_minP_3"
## [1] "RANDOM3_5bp_10bp_hBGm_1"
## [1] "RANDOM3_5bp_10bp_hBGm_2"
## [1] "RANDOM3_5bp_10bp_hBGm_3"
## [1] "RANDOM3_5bp_10bp_mCMV_1"
## [1] "RANDOM3_5bp_10bp_mCMV_2"
## [1] "RANDOM3_5bp_10bp_mCMV_3"
## [1] "RANDOM3_5bp_10bp_minP_1"
## [1] "RANDOM3_5bp_10bp_minP_2"
## [1] "RANDOM3_5bp_10bp_minP_3"
## [1] "RANDOM3_5bp_21bp_hBGm_1"
## [1] "RANDOM3_5bp_21bp_hBGm_2"
## [1] "RANDOM3_5bp_21bp_hBGm_3"
## [1] "RANDOM3_5bp_21bp_mCMV_1"
## [1] "RANDOM3_5bp_21bp_mCMV_2"
## [1] "RANDOM3_5bp_21bp_mCMV_3"
## [1] "RANDOM3_5bp_21bp_minP_1"
## [1] "RANDOM3_5bp_21bp_minP_2"
## [1] "RANDOM3_5bp_21bp_minP_3"
## [1] "RARA:RXRA_10bp_10bp_mCMV_1"
## [1] "RARA:RXRA_10bp_10bp_mCMV_2"
## [1] "RARA:RXRA_10bp_10bp_mCMV_3"
## [1] "RARA:RXRA_10bp_10bp_minP_1"
## [1] "RARA:RXRA_10bp_10bp_minP_2"
## [1] "RARA:RXRA_10bp_10bp_minP_3"
## [1] "RARA:RXRA_10bp_21bp_Random_1"
## [1] "RARA:RXRA_10bp_21bp_mCMV_1"
## [1] "RARA:RXRA_10bp_21bp_mCMV_2"
## [1] "RARA:RXRA_10bp_21bp_mCMV_3"
## [1] "RARA:RXRA_10bp_21bp_minP_1"
## [1] "RARA:RXRA_10bp_21bp_minP_2"
## [1] "RARA:RXRA_10bp_21bp_minP_3"
## [1] "RARA:RXRA_5bp_10bp_mCMV_1"
## [1] "RARA:RXRA_5bp_10bp_mCMV_2"
## [1] "RARA:RXRA_5bp_10bp_mCMV_3"
## [1] "RARA:RXRA_5bp_10bp_minP_1"
## [1] "RARA:RXRA_5bp_10bp_minP_2"
## [1] "RARA:RXRA_5bp_10bp_minP_3"
## [1] "RARA:RXRA_5bp_21bp_mCMV_1"
## [1] "RARA:RXRA_5bp_21bp_mCMV_2"
## [1] "RARA:RXRA_5bp_21bp_mCMV_3"
## [1] "RARA:RXRA_5bp_21bp_minP_1"
## [1] "RARA:RXRA_5bp_21bp_minP_2"
## [1] "RARA:RXRA_5bp_21bp_minP_3"
## [1] "RARA:RXRA_TF-seq_NA_10bp_mCMV_NA"
## [1] "RARA:RXRA_TF-seq_NA_10bp_minP_NA"
## [1] "RARA:RXRA_TF-seq_NA_21bp_mCMV_NA"
## [1] "RARA:RXRA_TF-seq_NA_21bp_minP_NA"
## [1] "RARA_10bp_10bp_hBGm_1"
## [1] "RARA_10bp_10bp_hBGm_2"
## [1] "RARA_10bp_10bp_hBGm_3"
## [1] "RARA_10bp_10bp_mCMV_1"
## [1] "RARA_10bp_10bp_mCMV_2"
## [1] "RARA_10bp_10bp_mCMV_3"
## [1] "RARA_10bp_10bp_minP_1"
## [1] "RARA_10bp_10bp_minP_2"
## [1] "RARA_10bp_10bp_minP_3"
## [1] "RARA_10bp_21bp_Random_1"
## [1] "RARA_10bp_21bp_hBGm_1"
## [1] "RARA_10bp_21bp_hBGm_2"
## [1] "RARA_10bp_21bp_hBGm_3"
## [1] "RARA_10bp_21bp_mCMV_1"
## [1] "RARA_10bp_21bp_mCMV_2"
## [1] "RARA_10bp_21bp_mCMV_3"
## [1] "RARA_10bp_21bp_minP_1"
## [1] "RARA_10bp_21bp_minP_2"
## [1] "RARA_10bp_21bp_minP_3"
## [1] "RARA_5bp_10bp_hBGm_1"
## [1] "RARA_5bp_10bp_hBGm_2"
## [1] "RARA_5bp_10bp_hBGm_3"
## [1] "RARA_5bp_10bp_mCMV_1"
## [1] "RARA_5bp_10bp_mCMV_2"
## [1] "RARA_5bp_10bp_mCMV_3"
## [1] "RARA_5bp_10bp_minP_1"
## [1] "RARA_5bp_10bp_minP_2"
## [1] "RARA_5bp_10bp_minP_3"
## [1] "RARA_5bp_21bp_hBGm_1"
## [1] "RARA_5bp_21bp_hBGm_2"
## [1] "RARA_5bp_21bp_hBGm_3"
## [1] "RARA_5bp_21bp_mCMV_1"
## [1] "RARA_5bp_21bp_mCMV_2"
## [1] "RARA_5bp_21bp_mCMV_3"
## [1] "RARA_5bp_21bp_minP_1"
## [1] "RARA_5bp_21bp_minP_2"
## [1] "RARA_5bp_21bp_minP_3"
## [1] "RARA_TF-seq_NA_10bp_mCMV_NA"
## [1] "RARA_TF-seq_NA_10bp_minP_NA"
## [1] "RARA_TF-seq_NA_21bp_mCMV_NA"
## [1] "RARA_TF-seq_NA_21bp_minP_NA"
## [1] "RBPJ_10bp_10bp_hBGm_1"
## [1] "RBPJ_10bp_10bp_hBGm_2"
## [1] "RBPJ_10bp_10bp_hBGm_3"
## [1] "RBPJ_10bp_10bp_mCMV_1"
## [1] "RBPJ_10bp_10bp_mCMV_2"
## [1] "RBPJ_10bp_10bp_mCMV_3"
## [1] "RBPJ_10bp_10bp_minP_1"
## [1] "RBPJ_10bp_10bp_minP_2"
## [1] "RBPJ_10bp_10bp_minP_3"
## [1] "RBPJ_10bp_21bp_Random_1"
## [1] "RBPJ_10bp_21bp_hBGm_1"
## [1] "RBPJ_10bp_21bp_hBGm_2"
## [1] "RBPJ_10bp_21bp_hBGm_3"
## [1] "RBPJ_10bp_21bp_mCMV_1"
## [1] "RBPJ_10bp_21bp_mCMV_2"
## [1] "RBPJ_10bp_21bp_mCMV_3"
## [1] "RBPJ_10bp_21bp_minP_1"
## [1] "RBPJ_10bp_21bp_minP_2"
## [1] "RBPJ_10bp_21bp_minP_3"
## [1] "RBPJ_5bp_10bp_hBGm_1"
## [1] "RBPJ_5bp_10bp_hBGm_2"
## [1] "RBPJ_5bp_10bp_hBGm_3"
## [1] "RBPJ_5bp_10bp_mCMV_1"
## [1] "RBPJ_5bp_10bp_mCMV_2"
## [1] "RBPJ_5bp_10bp_mCMV_3"
## [1] "RBPJ_5bp_10bp_minP_1"
## [1] "RBPJ_5bp_10bp_minP_2"
## [1] "RBPJ_5bp_10bp_minP_3"
## [1] "RBPJ_5bp_21bp_hBGm_1"
## [1] "RBPJ_5bp_21bp_hBGm_2"
## [1] "RBPJ_5bp_21bp_hBGm_3"
## [1] "RBPJ_5bp_21bp_mCMV_1"
## [1] "RBPJ_5bp_21bp_mCMV_2"
## [1] "RBPJ_5bp_21bp_mCMV_3"
## [1] "RBPJ_5bp_21bp_minP_1"
## [1] "RBPJ_5bp_21bp_minP_2"
## [1] "RBPJ_5bp_21bp_minP_3"
## [1] "RBPJ_TF-seq_NA_10bp_mCMV_NA"
## [1] "RBPJ_TF-seq_NA_10bp_minP_NA"
## [1] "RBPJ_TF-seq_NA_21bp_mCMV_NA"
## [1] "RBPJ_TF-seq_NA_21bp_minP_NA"
## [1] "REL_10bp_10bp_mCMV_1"
## [1] "REL_10bp_10bp_mCMV_2"
## [1] "REL_10bp_10bp_mCMV_3"
## [1] "REL_10bp_10bp_minP_1"
## [1] "REL_10bp_10bp_minP_2"
## [1] "REL_10bp_10bp_minP_3"
## [1] "REL_10bp_21bp_Random_1"
## [1] "REL_10bp_21bp_mCMV_1"
## [1] "REL_10bp_21bp_mCMV_2"
## [1] "REL_10bp_21bp_mCMV_3"
## [1] "REL_10bp_21bp_minP_1"
## [1] "REL_10bp_21bp_minP_2"
## [1] "REL_10bp_21bp_minP_3"
## [1] "REL_5bp_10bp_mCMV_1"
## [1] "REL_5bp_10bp_mCMV_2"
## [1] "REL_5bp_10bp_mCMV_3"
## [1] "REL_5bp_10bp_minP_1"
## [1] "REL_5bp_10bp_minP_2"
## [1] "REL_5bp_10bp_minP_3"
## [1] "REL_5bp_21bp_mCMV_1"
## [1] "REL_5bp_21bp_mCMV_2"
## [1] "REL_5bp_21bp_mCMV_3"
## [1] "REL_5bp_21bp_minP_1"
## [1] "REL_5bp_21bp_minP_2"
## [1] "REL_5bp_21bp_minP_3"
## [1] "REL_TF-seq_NA_10bp_mCMV_NA"
## [1] "REL_TF-seq_NA_10bp_minP_NA"
## [1] "REL_TF-seq_NA_21bp_mCMV_NA"
## [1] "REL_TF-seq_NA_21bp_minP_NA"
## [1] "RFX1_10bp_10bp_mCMV_1"
## [1] "RFX1_10bp_10bp_mCMV_2"
## [1] "RFX1_10bp_10bp_mCMV_3"
## [1] "RFX1_10bp_10bp_minP_1"
## [1] "RFX1_10bp_10bp_minP_2"
## [1] "RFX1_10bp_10bp_minP_3"
## [1] "RFX1_10bp_21bp_Random_1"
## [1] "RFX1_10bp_21bp_mCMV_1"
## [1] "RFX1_10bp_21bp_mCMV_2"
## [1] "RFX1_10bp_21bp_mCMV_3"
## [1] "RFX1_10bp_21bp_minP_1"
## [1] "RFX1_10bp_21bp_minP_2"
## [1] "RFX1_10bp_21bp_minP_3"
## [1] "RFX1_5bp_10bp_mCMV_1"
## [1] "RFX1_5bp_10bp_mCMV_2"
## [1] "RFX1_5bp_10bp_mCMV_3"
## [1] "RFX1_5bp_10bp_minP_1"
## [1] "RFX1_5bp_10bp_minP_2"
## [1] "RFX1_5bp_10bp_minP_3"
## [1] "RFX1_5bp_21bp_mCMV_1"
## [1] "RFX1_5bp_21bp_mCMV_2"
## [1] "RFX1_5bp_21bp_mCMV_3"
## [1] "RFX1_5bp_21bp_minP_1"
## [1] "RFX1_5bp_21bp_minP_2"
## [1] "RFX1_5bp_21bp_minP_3"
## [1] "RORA_10bp_10bp_mCMV_1"
## [1] "RORA_10bp_10bp_mCMV_2"
## [1] "RORA_10bp_10bp_mCMV_3"
## [1] "RORA_10bp_10bp_minP_1"
## [1] "RORA_10bp_10bp_minP_2"
## [1] "RORA_10bp_10bp_minP_3"
## [1] "RORA_10bp_21bp_Random_1"
## [1] "RORA_10bp_21bp_mCMV_1"
## [1] "RORA_10bp_21bp_mCMV_2"
## [1] "RORA_10bp_21bp_mCMV_3"
## [1] "RORA_10bp_21bp_minP_1"
## [1] "RORA_10bp_21bp_minP_2"
## [1] "RORA_10bp_21bp_minP_3"
## [1] "RORA_5bp_10bp_mCMV_1"
## [1] "RORA_5bp_10bp_mCMV_2"
## [1] "RORA_5bp_10bp_mCMV_3"
## [1] "RORA_5bp_10bp_minP_1"
## [1] "RORA_5bp_10bp_minP_2"
## [1] "RORA_5bp_10bp_minP_3"
## [1] "RORA_5bp_21bp_mCMV_1"
## [1] "RORA_5bp_21bp_mCMV_2"
## [1] "RORA_5bp_21bp_mCMV_3"
## [1] "RORA_5bp_21bp_minP_1"
## [1] "RORA_5bp_21bp_minP_2"
## [1] "RORA_5bp_21bp_minP_3"
## [1] "RORA_TF-seq_NA_10bp_mCMV_NA"
## [1] "RORA_TF-seq_NA_10bp_minP_NA"
## [1] "RORA_TF-seq_NA_21bp_mCMV_NA"
## [1] "RORA_TF-seq_NA_21bp_minP_NA"
## [1] "RUNX2_10bp_10bp_mCMV_1"
## [1] "RUNX2_10bp_10bp_mCMV_2"
## [1] "RUNX2_10bp_10bp_mCMV_3"
## [1] "RUNX2_10bp_10bp_minP_1"
## [1] "RUNX2_10bp_10bp_minP_2"
## [1] "RUNX2_10bp_10bp_minP_3"
## [1] "RUNX2_10bp_21bp_Random_1"
## [1] "RUNX2_10bp_21bp_mCMV_1"
## [1] "RUNX2_10bp_21bp_mCMV_2"
## [1] "RUNX2_10bp_21bp_mCMV_3"
## [1] "RUNX2_10bp_21bp_minP_1"
## [1] "RUNX2_10bp_21bp_minP_2"
## [1] "RUNX2_10bp_21bp_minP_3"
## [1] "RUNX2_5bp_10bp_mCMV_1"
## [1] "RUNX2_5bp_10bp_mCMV_2"
## [1] "RUNX2_5bp_10bp_mCMV_3"
## [1] "RUNX2_5bp_10bp_minP_1"
## [1] "RUNX2_5bp_10bp_minP_2"
## [1] "RUNX2_5bp_10bp_minP_3"
## [1] "RUNX2_5bp_21bp_mCMV_1"
## [1] "RUNX2_5bp_21bp_mCMV_2"
## [1] "RUNX2_5bp_21bp_mCMV_3"
## [1] "RUNX2_5bp_21bp_minP_1"
## [1] "RUNX2_5bp_21bp_minP_2"
## [1] "RUNX2_5bp_21bp_minP_3"
## [1] "RUNX2_TF-seq_NA_10bp_mCMV_NA"
## [1] "RUNX2_TF-seq_NA_10bp_minP_NA"
## [1] "RUNX2_TF-seq_NA_21bp_mCMV_NA"
## [1] "RUNX2_TF-seq_NA_21bp_minP_NA"
## [1] "RXRA_10bp_10bp_mCMV_1"
## [1] "RXRA_10bp_10bp_mCMV_2"
## [1] "RXRA_10bp_10bp_mCMV_3"
## [1] "RXRA_10bp_10bp_minP_1"
## [1] "RXRA_10bp_10bp_minP_2"
## [1] "RXRA_10bp_10bp_minP_3"
## [1] "RXRA_10bp_21bp_Random_1"
## [1] "RXRA_10bp_21bp_mCMV_1"
## [1] "RXRA_10bp_21bp_mCMV_2"
## [1] "RXRA_10bp_21bp_mCMV_3"
## [1] "RXRA_10bp_21bp_minP_1"
## [1] "RXRA_10bp_21bp_minP_2"
## [1] "RXRA_10bp_21bp_minP_3"
## [1] "RXRA_5bp_10bp_mCMV_1"
## [1] "RXRA_5bp_10bp_mCMV_2"
## [1] "RXRA_5bp_10bp_mCMV_3"
## [1] "RXRA_5bp_10bp_minP_1"
## [1] "RXRA_5bp_10bp_minP_2"
## [1] "RXRA_5bp_10bp_minP_3"
## [1] "RXRA_5bp_21bp_mCMV_1"
## [1] "RXRA_5bp_21bp_mCMV_2"
## [1] "RXRA_5bp_21bp_mCMV_3"
## [1] "RXRA_5bp_21bp_minP_1"
## [1] "RXRA_5bp_21bp_minP_2"
## [1] "RXRA_5bp_21bp_minP_3"
## [1] "SMAD2::SMAD3::SMAD4_10bp_10bp_mCMV_1"
## [1] "SMAD2::SMAD3::SMAD4_10bp_10bp_mCMV_2"
## [1] "SMAD2::SMAD3::SMAD4_10bp_10bp_mCMV_3"
## [1] "SMAD2::SMAD3::SMAD4_10bp_10bp_minP_1"
## [1] "SMAD2::SMAD3::SMAD4_10bp_10bp_minP_2"
## [1] "SMAD2::SMAD3::SMAD4_10bp_10bp_minP_3"
## [1] "SMAD2::SMAD3::SMAD4_10bp_21bp_Random_1"
## [1] "SMAD2::SMAD3::SMAD4_10bp_21bp_mCMV_1"
## [1] "SMAD2::SMAD3::SMAD4_10bp_21bp_mCMV_2"
## [1] "SMAD2::SMAD3::SMAD4_10bp_21bp_mCMV_3"
## [1] "SMAD2::SMAD3::SMAD4_10bp_21bp_minP_1"
## [1] "SMAD2::SMAD3::SMAD4_10bp_21bp_minP_2"
## [1] "SMAD2::SMAD3::SMAD4_10bp_21bp_minP_3"
## [1] "SMAD2::SMAD3::SMAD4_5bp_10bp_mCMV_1"
## [1] "SMAD2::SMAD3::SMAD4_5bp_10bp_mCMV_2"
## [1] "SMAD2::SMAD3::SMAD4_5bp_10bp_mCMV_3"
## [1] "SMAD2::SMAD3::SMAD4_5bp_10bp_minP_1"
## [1] "SMAD2::SMAD3::SMAD4_5bp_10bp_minP_2"
## [1] "SMAD2::SMAD3::SMAD4_5bp_10bp_minP_3"
## [1] "SMAD2::SMAD3::SMAD4_5bp_21bp_mCMV_1"
## [1] "SMAD2::SMAD3::SMAD4_5bp_21bp_mCMV_2"
## [1] "SMAD2::SMAD3::SMAD4_5bp_21bp_mCMV_3"
## [1] "SMAD2::SMAD3::SMAD4_5bp_21bp_minP_1"
## [1] "SMAD2::SMAD3::SMAD4_5bp_21bp_minP_2"
## [1] "SMAD2::SMAD3::SMAD4_5bp_21bp_minP_3"
## [1] "SMAD2::SMAD3::SMAD4_TF-seq_NA_10bp_mCMV_NA"
## [1] "SMAD2::SMAD3::SMAD4_TF-seq_NA_10bp_minP_NA"
## [1] "SMAD2::SMAD3::SMAD4_TF-seq_NA_21bp_mCMV_NA"
## [1] "SMAD2::SMAD3::SMAD4_TF-seq_NA_21bp_minP_NA"
## [1] "SMAD2::SMAD3::SMAD4_promega_NA_10bp_mCMV_NA"
## [1] "SMAD2::SMAD3::SMAD4_promega_NA_10bp_minP_NA"
## [1] "SMAD2::SMAD3::SMAD4_promega_NA_21bp_mCMV_NA"
## [1] "SMAD2::SMAD3::SMAD4_promega_NA_21bp_minP_NA"
## [1] "SMAD2::SMAD3::SMAD4_promega_long_NA_10bp_mCMV_NA"
## [1] "SMAD2::SMAD3::SMAD4_promega_long_NA_10bp_minP_NA"
## [1] "SMAD2::SMAD3::SMAD4_romanov_NA_10bp_mCMV_NA"
## [1] "SMAD2::SMAD3::SMAD4_romanov_NA_10bp_minP_NA"
## [1] "SMAD2::SMAD3::SMAD4_romanov_NA_21bp_mCMV_NA"
## [1] "SMAD2::SMAD3::SMAD4_romanov_NA_21bp_minP_NA"
## [1] "SMAD4_10bp_10bp_hBGm_1"
## [1] "SMAD4_10bp_10bp_hBGm_2"
## [1] "SMAD4_10bp_10bp_hBGm_3"
## [1] "SMAD4_10bp_10bp_mCMV_1"
## [1] "SMAD4_10bp_10bp_mCMV_2"
## [1] "SMAD4_10bp_10bp_mCMV_3"
## [1] "SMAD4_10bp_10bp_minP_1"
## [1] "SMAD4_10bp_10bp_minP_2"
## [1] "SMAD4_10bp_10bp_minP_3"
## [1] "SMAD4_10bp_21bp_Random_1"
## [1] "SMAD4_10bp_21bp_hBGm_1"
## [1] "SMAD4_10bp_21bp_hBGm_2"
## [1] "SMAD4_10bp_21bp_hBGm_3"
## [1] "SMAD4_10bp_21bp_mCMV_1"
## [1] "SMAD4_10bp_21bp_mCMV_2"
## [1] "SMAD4_10bp_21bp_mCMV_3"
## [1] "SMAD4_10bp_21bp_minP_1"
## [1] "SMAD4_10bp_21bp_minP_2"
## [1] "SMAD4_10bp_21bp_minP_3"
## [1] "SMAD4_5bp_10bp_hBGm_1"
## [1] "SMAD4_5bp_10bp_hBGm_2"
## [1] "SMAD4_5bp_10bp_hBGm_3"
## [1] "SMAD4_5bp_10bp_mCMV_1"
## [1] "SMAD4_5bp_10bp_mCMV_2"
## [1] "SMAD4_5bp_10bp_mCMV_3"
## [1] "SMAD4_5bp_10bp_minP_1"
## [1] "SMAD4_5bp_10bp_minP_2"
## [1] "SMAD4_5bp_10bp_minP_3"
## [1] "SMAD4_5bp_21bp_hBGm_1"
## [1] "SMAD4_5bp_21bp_hBGm_2"
## [1] "SMAD4_5bp_21bp_hBGm_3"
## [1] "SMAD4_5bp_21bp_mCMV_1"
## [1] "SMAD4_5bp_21bp_mCMV_2"
## [1] "SMAD4_5bp_21bp_mCMV_3"
## [1] "SMAD4_5bp_21bp_minP_1"
## [1] "SMAD4_5bp_21bp_minP_2"
## [1] "SMAD4_5bp_21bp_minP_3"
## [1] "SOX2_10bp_10bp_mCMV_1"
## [1] "SOX2_10bp_10bp_mCMV_2"
## [1] "SOX2_10bp_10bp_mCMV_3"
## [1] "SOX2_10bp_10bp_minP_1"
## [1] "SOX2_10bp_10bp_minP_2"
## [1] "SOX2_10bp_10bp_minP_3"
## [1] "SOX2_10bp_21bp_Random_1"
## [1] "SOX2_10bp_21bp_mCMV_1"
## [1] "SOX2_10bp_21bp_mCMV_2"
## [1] "SOX2_10bp_21bp_mCMV_3"
## [1] "SOX2_10bp_21bp_minP_1"
## [1] "SOX2_10bp_21bp_minP_2"
## [1] "SOX2_10bp_21bp_minP_3"
## [1] "SOX2_5bp_10bp_mCMV_1"
## [1] "SOX2_5bp_10bp_mCMV_2"
## [1] "SOX2_5bp_10bp_mCMV_3"
## [1] "SOX2_5bp_10bp_minP_1"
## [1] "SOX2_5bp_10bp_minP_2"
## [1] "SOX2_5bp_10bp_minP_3"
## [1] "SOX2_5bp_21bp_mCMV_1"
## [1] "SOX2_5bp_21bp_mCMV_2"
## [1] "SOX2_5bp_21bp_mCMV_3"
## [1] "SOX2_5bp_21bp_minP_1"
## [1] "SOX2_5bp_21bp_minP_2"
## [1] "SOX2_5bp_21bp_minP_3"
## [1] "SOX2_romanov_NA_10bp_mCMV_NA"
## [1] "SOX2_romanov_NA_10bp_minP_NA"
## [1] "SOX2_romanov_NA_21bp_mCMV_NA"
## [1] "SOX2_romanov_NA_21bp_minP_NA"
## [1] "SOX9_10bp_10bp_mCMV_1"
## [1] "SOX9_10bp_10bp_mCMV_2"
## [1] "SOX9_10bp_10bp_mCMV_3"
## [1] "SOX9_10bp_10bp_minP_1"
## [1] "SOX9_10bp_10bp_minP_2"
## [1] "SOX9_10bp_10bp_minP_3"
## [1] "SOX9_10bp_21bp_Random_1"
## [1] "SOX9_10bp_21bp_mCMV_1"
## [1] "SOX9_10bp_21bp_mCMV_2"
## [1] "SOX9_10bp_21bp_mCMV_3"
## [1] "SOX9_10bp_21bp_minP_1"
## [1] "SOX9_10bp_21bp_minP_2"
## [1] "SOX9_10bp_21bp_minP_3"
## [1] "SOX9_5bp_10bp_mCMV_1"
## [1] "SOX9_5bp_10bp_mCMV_2"
## [1] "SOX9_5bp_10bp_mCMV_3"
## [1] "SOX9_5bp_10bp_minP_1"
## [1] "SOX9_5bp_10bp_minP_2"
## [1] "SOX9_5bp_10bp_minP_3"
## [1] "SOX9_5bp_21bp_mCMV_1"
## [1] "SOX9_5bp_21bp_mCMV_2"
## [1] "SOX9_5bp_21bp_mCMV_3"
## [1] "SOX9_5bp_21bp_minP_1"
## [1] "SOX9_5bp_21bp_minP_2"
## [1] "SOX9_5bp_21bp_minP_3"
## [1] "SP1_10bp_10bp_hBGm_1"
## [1] "SP1_10bp_10bp_hBGm_2"
## [1] "SP1_10bp_10bp_hBGm_3"
## [1] "SP1_10bp_10bp_mCMV_1"
## [1] "SP1_10bp_10bp_mCMV_2"
## [1] "SP1_10bp_10bp_mCMV_3"
## [1] "SP1_10bp_10bp_minP_1"
## [1] "SP1_10bp_10bp_minP_2"
## [1] "SP1_10bp_10bp_minP_3"
## [1] "SP1_10bp_21bp_Random_1"
## [1] "SP1_10bp_21bp_hBGm_1"
## [1] "SP1_10bp_21bp_hBGm_2"
## [1] "SP1_10bp_21bp_hBGm_3"
## [1] "SP1_10bp_21bp_mCMV_1"
## [1] "SP1_10bp_21bp_mCMV_2"
## [1] "SP1_10bp_21bp_mCMV_3"
## [1] "SP1_10bp_21bp_minP_1"
## [1] "SP1_10bp_21bp_minP_2"
## [1] "SP1_10bp_21bp_minP_3"
## [1] "SP1_5bp_10bp_hBGm_1"
## [1] "SP1_5bp_10bp_hBGm_2"
## [1] "SP1_5bp_10bp_hBGm_3"
## [1] "SP1_5bp_10bp_mCMV_1"
## [1] "SP1_5bp_10bp_mCMV_2"
## [1] "SP1_5bp_10bp_mCMV_3"
## [1] "SP1_5bp_10bp_minP_1"
## [1] "SP1_5bp_10bp_minP_2"
## [1] "SP1_5bp_10bp_minP_3"
## [1] "SP1_5bp_21bp_hBGm_1"
## [1] "SP1_5bp_21bp_hBGm_2"
## [1] "SP1_5bp_21bp_hBGm_3"
## [1] "SP1_5bp_21bp_mCMV_1"
## [1] "SP1_5bp_21bp_mCMV_2"
## [1] "SP1_5bp_21bp_mCMV_3"
## [1] "SP1_5bp_21bp_minP_1"
## [1] "SP1_5bp_21bp_minP_2"
## [1] "SP1_5bp_21bp_minP_3"
## [1] "SP1_TF-seq_NA_10bp_mCMV_NA"
## [1] "SP1_TF-seq_NA_10bp_minP_NA"
## [1] "SP1_TF-seq_NA_21bp_mCMV_NA"
## [1] "SP1_TF-seq_NA_21bp_minP_NA"
## [1] "SP1_romanov_NA_10bp_mCMV_NA"
## [1] "SP1_romanov_NA_10bp_minP_NA"
## [1] "SP1_romanov_NA_21bp_mCMV_NA"
## [1] "SP1_romanov_NA_21bp_minP_NA"
## [1] "SREBF1_TF-seq_NA_10bp_mCMV_NA"
## [1] "SREBF1_TF-seq_NA_10bp_minP_NA"
## [1] "SREBF1_TF-seq_NA_21bp_mCMV_NA"
## [1] "SREBF1_TF-seq_NA_21bp_minP_NA"
## [1] "SREBP_romanov_NA_10bp_mCMV_NA"
## [1] "SREBP_romanov_NA_10bp_minP_NA"
## [1] "SREBP_romanov_NA_21bp_mCMV_NA"
## [1] "SREBP_romanov_NA_21bp_minP_NA"
## [1] "SRE_promega_NA_10bp_mCMV_NA"
## [1] "SRE_promega_NA_10bp_minP_NA"
## [1] "SRE_promega_NA_21bp_mCMV_NA"
## [1] "SRE_promega_NA_21bp_minP_NA"
## [1] "SRE_promega_long_NA_10bp_mCMV_NA"
## [1] "SRE_promega_long_NA_10bp_minP_NA"
## [1] "SRF_10bp_10bp_mCMV_1"
## [1] "SRF_10bp_10bp_mCMV_2"
## [1] "SRF_10bp_10bp_mCMV_3"
## [1] "SRF_10bp_10bp_minP_1"
## [1] "SRF_10bp_10bp_minP_2"
## [1] "SRF_10bp_10bp_minP_3"
## [1] "SRF_10bp_21bp_Random_1"
## [1] "SRF_10bp_21bp_mCMV_1"
## [1] "SRF_10bp_21bp_mCMV_2"
## [1] "SRF_10bp_21bp_mCMV_3"
## [1] "SRF_10bp_21bp_minP_1"
## [1] "SRF_10bp_21bp_minP_2"
## [1] "SRF_10bp_21bp_minP_3"
## [1] "SRF_5bp_10bp_mCMV_1"
## [1] "SRF_5bp_10bp_mCMV_2"
## [1] "SRF_5bp_10bp_mCMV_3"
## [1] "SRF_5bp_10bp_minP_1"
## [1] "SRF_5bp_10bp_minP_2"
## [1] "SRF_5bp_10bp_minP_3"
## [1] "SRF_5bp_21bp_mCMV_1"
## [1] "SRF_5bp_21bp_mCMV_2"
## [1] "SRF_5bp_21bp_mCMV_3"
## [1] "SRF_5bp_21bp_minP_1"
## [1] "SRF_5bp_21bp_minP_2"
## [1] "SRF_5bp_21bp_minP_3"
## [1] "SRF_TF-seq_NA_10bp_mCMV_NA"
## [1] "SRF_TF-seq_NA_10bp_minP_NA"
## [1] "SRF_TF-seq_NA_21bp_mCMV_NA"
## [1] "SRF_TF-seq_NA_21bp_minP_NA"
## [1] "SRF_promega_NA_10bp_mCMV_NA"
## [1] "SRF_promega_NA_10bp_minP_NA"
## [1] "SRF_promega_NA_21bp_mCMV_NA"
## [1] "SRF_promega_NA_21bp_minP_NA"
## [1] "SRF_promega_long_NA_10bp_mCMV_NA"
## [1] "SRF_promega_long_NA_10bp_minP_NA"
## [1] "STAT1.49_TF-seq_NA_10bp_mCMV_NA"
## [1] "STAT1.49_TF-seq_NA_10bp_minP_NA"
## [1] "STAT1.49_TF-seq_NA_21bp_mCMV_NA"
## [1] "STAT1.49_TF-seq_NA_21bp_minP_NA"
## [1] "STAT1.50_TF-seq_NA_10bp_mCMV_NA"
## [1] "STAT1.50_TF-seq_NA_10bp_minP_NA"
## [1] "STAT1.50_TF-seq_NA_21bp_mCMV_NA"
## [1] "STAT1.50_TF-seq_NA_21bp_minP_NA"
## [1] "STAT1::STAT2_10bp_10bp_mCMV_1"
## [1] "STAT1::STAT2_10bp_10bp_mCMV_2"
## [1] "STAT1::STAT2_10bp_10bp_mCMV_3"
## [1] "STAT1::STAT2_10bp_10bp_minP_1"
## [1] "STAT1::STAT2_10bp_10bp_minP_2"
## [1] "STAT1::STAT2_10bp_10bp_minP_3"
## [1] "STAT1::STAT2_10bp_21bp_Random_1"
## [1] "STAT1::STAT2_10bp_21bp_mCMV_1"
## [1] "STAT1::STAT2_10bp_21bp_mCMV_2"
## [1] "STAT1::STAT2_10bp_21bp_mCMV_3"
## [1] "STAT1::STAT2_10bp_21bp_minP_1"
## [1] "STAT1::STAT2_10bp_21bp_minP_2"
## [1] "STAT1::STAT2_10bp_21bp_minP_3"
## [1] "STAT1::STAT2_5bp_10bp_mCMV_1"
## [1] "STAT1::STAT2_5bp_10bp_mCMV_2"
## [1] "STAT1::STAT2_5bp_10bp_mCMV_3"
## [1] "STAT1::STAT2_5bp_10bp_minP_1"
## [1] "STAT1::STAT2_5bp_10bp_minP_2"
## [1] "STAT1::STAT2_5bp_10bp_minP_3"
## [1] "STAT1::STAT2_5bp_21bp_mCMV_1"
## [1] "STAT1::STAT2_5bp_21bp_mCMV_2"
## [1] "STAT1::STAT2_5bp_21bp_mCMV_3"
## [1] "STAT1::STAT2_5bp_21bp_minP_1"
## [1] "STAT1::STAT2_5bp_21bp_minP_2"
## [1] "STAT1::STAT2_5bp_21bp_minP_3"
## [1] "STAT1::STAT2_TF-seq_NA_10bp_mCMV_NA"
## [1] "STAT1::STAT2_TF-seq_NA_10bp_minP_NA"
## [1] "STAT1::STAT2_TF-seq_NA_21bp_mCMV_NA"
## [1] "STAT1::STAT2_TF-seq_NA_21bp_minP_NA"
## [1] "STAT1::STAT2_promega_NA_10bp_mCMV_NA"
## [1] "STAT1::STAT2_promega_NA_10bp_minP_NA"
## [1] "STAT1::STAT2_promega_NA_21bp_mCMV_NA"
## [1] "STAT1::STAT2_promega_NA_21bp_minP_NA"
## [1] "STAT1_TF-seq_NA_10bp_mCMV_NA"
## [1] "STAT1_TF-seq_NA_10bp_minP_NA"
## [1] "STAT1_TF-seq_NA_21bp_mCMV_NA"
## [1] "STAT1_TF-seq_NA_21bp_minP_NA"
## [1] "STAT1_promega_long_NA_10bp_mCMV_NA"
## [1] "STAT1_promega_long_NA_10bp_minP_NA"
## [1] "STAT3_10bp_10bp_hBGm_1"
## [1] "STAT3_10bp_10bp_hBGm_2"
## [1] "STAT3_10bp_10bp_hBGm_3"
## [1] "STAT3_10bp_10bp_mCMV_1"
## [1] "STAT3_10bp_10bp_mCMV_2"
## [1] "STAT3_10bp_10bp_mCMV_3"
## [1] "STAT3_10bp_10bp_minP_1"
## [1] "STAT3_10bp_10bp_minP_2"
## [1] "STAT3_10bp_10bp_minP_3"
## [1] "STAT3_10bp_21bp_Random_1"
## [1] "STAT3_10bp_21bp_hBGm_1"
## [1] "STAT3_10bp_21bp_hBGm_2"
## [1] "STAT3_10bp_21bp_hBGm_3"
## [1] "STAT3_10bp_21bp_mCMV_1"
## [1] "STAT3_10bp_21bp_mCMV_2"
## [1] "STAT3_10bp_21bp_mCMV_3"
## [1] "STAT3_10bp_21bp_minP_1"
## [1] "STAT3_10bp_21bp_minP_2"
## [1] "STAT3_10bp_21bp_minP_3"
## [1] "STAT3_5bp_10bp_hBGm_1"
## [1] "STAT3_5bp_10bp_hBGm_2"
## [1] "STAT3_5bp_10bp_hBGm_3"
## [1] "STAT3_5bp_10bp_mCMV_1"
## [1] "STAT3_5bp_10bp_mCMV_2"
## [1] "STAT3_5bp_10bp_mCMV_3"
## [1] "STAT3_5bp_10bp_minP_1"
## [1] "STAT3_5bp_10bp_minP_2"
## [1] "STAT3_5bp_10bp_minP_3"
## [1] "STAT3_5bp_21bp_hBGm_1"
## [1] "STAT3_5bp_21bp_hBGm_2"
## [1] "STAT3_5bp_21bp_hBGm_3"
## [1] "STAT3_5bp_21bp_mCMV_1"
## [1] "STAT3_5bp_21bp_mCMV_2"
## [1] "STAT3_5bp_21bp_mCMV_3"
## [1] "STAT3_5bp_21bp_minP_1"
## [1] "STAT3_5bp_21bp_minP_2"
## [1] "STAT3_5bp_21bp_minP_3"
## [1] "STAT3_TF-seq_NA_10bp_mCMV_NA"
## [1] "STAT3_TF-seq_NA_10bp_minP_NA"
## [1] "STAT3_TF-seq_NA_21bp_mCMV_NA"
## [1] "STAT3_TF-seq_NA_21bp_minP_NA"
## [1] "STAT3_promega_NA_10bp_mCMV_NA"
## [1] "STAT3_promega_NA_10bp_minP_NA"
## [1] "STAT3_promega_NA_21bp_mCMV_NA"
## [1] "STAT3_promega_NA_21bp_minP_NA"
## [1] "STAT3_promega_long_NA_10bp_mCMV_NA"
## [1] "STAT3_promega_long_NA_10bp_minP_NA"
## [1] "STAT3_romanov_NA_10bp_mCMV_NA"
## [1] "STAT3_romanov_NA_10bp_minP_NA"
## [1] "STAT3_romanov_NA_21bp_mCMV_NA"
## [1] "STAT3_romanov_NA_21bp_minP_NA"
## [1] "STAT4_TF-seq_NA_10bp_mCMV_NA"
## [1] "STAT4_TF-seq_NA_10bp_minP_NA"
## [1] "STAT4_TF-seq_NA_21bp_mCMV_NA"
## [1] "STAT4_TF-seq_NA_21bp_minP_NA"
## [1] "STAT5_TF-seq_NA_10bp_mCMV_NA"
## [1] "STAT5_TF-seq_NA_10bp_minP_NA"
## [1] "STAT5_TF-seq_NA_21bp_mCMV_NA"
## [1] "STAT5_TF-seq_NA_21bp_minP_NA"
## [1] "STAT5_promega_NA_10bp_mCMV_NA"
## [1] "STAT5_promega_NA_10bp_minP_NA"
## [1] "STAT5_promega_NA_21bp_mCMV_NA"
## [1] "STAT5_promega_NA_21bp_minP_NA"
## [1] "STAT5_promega_long_NA_10bp_mCMV_NA"
## [1] "STAT5_promega_long_NA_10bp_minP_NA"
## [1] "STAT6_TF-seq_NA_10bp_mCMV_NA"
## [1] "STAT6_TF-seq_NA_10bp_minP_NA"
## [1] "STAT6_TF-seq_NA_21bp_mCMV_NA"
## [1] "STAT6_TF-seq_NA_21bp_minP_NA"
## [1] "TCF3_10bp_10bp_hBGm_1"
## [1] "TCF3_10bp_10bp_hBGm_2"
## [1] "TCF3_10bp_10bp_hBGm_3"
## [1] "TCF3_10bp_10bp_mCMV_1"
## [1] "TCF3_10bp_10bp_mCMV_2"
## [1] "TCF3_10bp_10bp_mCMV_3"
## [1] "TCF3_10bp_10bp_minP_1"
## [1] "TCF3_10bp_10bp_minP_2"
## [1] "TCF3_10bp_10bp_minP_3"
## [1] "TCF3_10bp_21bp_Random_1"
## [1] "TCF3_10bp_21bp_hBGm_1"
## [1] "TCF3_10bp_21bp_hBGm_2"
## [1] "TCF3_10bp_21bp_hBGm_3"
## [1] "TCF3_10bp_21bp_mCMV_1"
## [1] "TCF3_10bp_21bp_mCMV_2"
## [1] "TCF3_10bp_21bp_mCMV_3"
## [1] "TCF3_10bp_21bp_minP_1"
## [1] "TCF3_10bp_21bp_minP_2"
## [1] "TCF3_10bp_21bp_minP_3"
## [1] "TCF3_5bp_10bp_hBGm_1"
## [1] "TCF3_5bp_10bp_hBGm_2"
## [1] "TCF3_5bp_10bp_hBGm_3"
## [1] "TCF3_5bp_10bp_mCMV_1"
## [1] "TCF3_5bp_10bp_mCMV_2"
## [1] "TCF3_5bp_10bp_mCMV_3"
## [1] "TCF3_5bp_10bp_minP_1"
## [1] "TCF3_5bp_10bp_minP_2"
## [1] "TCF3_5bp_10bp_minP_3"
## [1] "TCF3_5bp_21bp_hBGm_1"
## [1] "TCF3_5bp_21bp_hBGm_2"
## [1] "TCF3_5bp_21bp_hBGm_3"
## [1] "TCF3_5bp_21bp_mCMV_1"
## [1] "TCF3_5bp_21bp_mCMV_2"
## [1] "TCF3_5bp_21bp_mCMV_3"
## [1] "TCF3_5bp_21bp_minP_1"
## [1] "TCF3_5bp_21bp_minP_2"
## [1] "TCF3_5bp_21bp_minP_3"
## [1] "TCF7_10bp_10bp_mCMV_1"
## [1] "TCF7_10bp_10bp_mCMV_2"
## [1] "TCF7_10bp_10bp_mCMV_3"
## [1] "TCF7_10bp_10bp_minP_1"
## [1] "TCF7_10bp_10bp_minP_2"
## [1] "TCF7_10bp_10bp_minP_3"
## [1] "TCF7_10bp_21bp_Random_1"
## [1] "TCF7_10bp_21bp_mCMV_1"
## [1] "TCF7_10bp_21bp_mCMV_2"
## [1] "TCF7_10bp_21bp_mCMV_3"
## [1] "TCF7_10bp_21bp_minP_1"
## [1] "TCF7_10bp_21bp_minP_2"
## [1] "TCF7_10bp_21bp_minP_3"
## [1] "TCF7_5bp_10bp_mCMV_1"
## [1] "TCF7_5bp_10bp_mCMV_2"
## [1] "TCF7_5bp_10bp_mCMV_3"
## [1] "TCF7_5bp_10bp_minP_1"
## [1] "TCF7_5bp_10bp_minP_2"
## [1] "TCF7_5bp_10bp_minP_3"
## [1] "TCF7_5bp_21bp_mCMV_1"
## [1] "TCF7_5bp_21bp_mCMV_2"
## [1] "TCF7_5bp_21bp_mCMV_3"
## [1] "TCF7_5bp_21bp_minP_1"
## [1] "TCF7_5bp_21bp_minP_2"
## [1] "TCF7_5bp_21bp_minP_3"
## [1] "TCF7_TF-seq_NA_10bp_mCMV_NA"
## [1] "TCF7_TF-seq_NA_10bp_minP_NA"
## [1] "TCF7_TF-seq_NA_21bp_mCMV_NA"
## [1] "TCF7_TF-seq_NA_21bp_minP_NA"
## [1] "TCF7_promega_NA_10bp_mCMV_NA"
## [1] "TCF7_promega_NA_10bp_minP_NA"
## [1] "TCF7_promega_NA_21bp_mCMV_NA"
## [1] "TCF7_promega_NA_21bp_minP_NA"
## [1] "TCF7_promega_long_NA_10bp_mCMV_NA"
## [1] "TCF7_promega_long_NA_10bp_minP_NA"
## [1] "TCF7_romanov_NA_10bp_mCMV_NA"
## [1] "TCF7_romanov_NA_10bp_minP_NA"
## [1] "TCF7_romanov_NA_21bp_mCMV_NA"
## [1] "TCF7_romanov_NA_21bp_minP_NA"
## [1] "TEAD1_10bp_10bp_mCMV_1"
## [1] "TEAD1_10bp_10bp_mCMV_2"
## [1] "TEAD1_10bp_10bp_mCMV_3"
## [1] "TEAD1_10bp_10bp_minP_1"
## [1] "TEAD1_10bp_10bp_minP_2"
## [1] "TEAD1_10bp_10bp_minP_3"
## [1] "TEAD1_10bp_21bp_Random_1"
## [1] "TEAD1_10bp_21bp_mCMV_1"
## [1] "TEAD1_10bp_21bp_mCMV_2"
## [1] "TEAD1_10bp_21bp_mCMV_3"
## [1] "TEAD1_10bp_21bp_minP_1"
## [1] "TEAD1_10bp_21bp_minP_2"
## [1] "TEAD1_10bp_21bp_minP_3"
## [1] "TEAD1_5bp_10bp_mCMV_1"
## [1] "TEAD1_5bp_10bp_mCMV_2"
## [1] "TEAD1_5bp_10bp_mCMV_3"
## [1] "TEAD1_5bp_10bp_minP_1"
## [1] "TEAD1_5bp_10bp_minP_2"
## [1] "TEAD1_5bp_10bp_minP_3"
## [1] "TEAD1_5bp_21bp_mCMV_1"
## [1] "TEAD1_5bp_21bp_mCMV_2"
## [1] "TEAD1_5bp_21bp_mCMV_3"
## [1] "TEAD1_5bp_21bp_minP_1"
## [1] "TEAD1_5bp_21bp_minP_2"
## [1] "TEAD1_5bp_21bp_minP_3"
## [1] "TEAD1_TF-seq_NA_10bp_mCMV_NA"
## [1] "TEAD1_TF-seq_NA_10bp_minP_NA"
## [1] "TEAD1_TF-seq_NA_21bp_mCMV_NA"
## [1] "TEAD1_TF-seq_NA_21bp_minP_NA"
## [1] "TFAP2A_10bp_10bp_mCMV_1"
## [1] "TFAP2A_10bp_10bp_mCMV_2"
## [1] "TFAP2A_10bp_10bp_mCMV_3"
## [1] "TFAP2A_10bp_10bp_minP_1"
## [1] "TFAP2A_10bp_10bp_minP_2"
## [1] "TFAP2A_10bp_10bp_minP_3"
## [1] "TFAP2A_10bp_21bp_Random_1"
## [1] "TFAP2A_10bp_21bp_mCMV_1"
## [1] "TFAP2A_10bp_21bp_mCMV_2"
## [1] "TFAP2A_10bp_21bp_mCMV_3"
## [1] "TFAP2A_10bp_21bp_minP_1"
## [1] "TFAP2A_10bp_21bp_minP_2"
## [1] "TFAP2A_10bp_21bp_minP_3"
## [1] "TFAP2A_5bp_10bp_mCMV_1"
## [1] "TFAP2A_5bp_10bp_mCMV_2"
## [1] "TFAP2A_5bp_10bp_mCMV_3"
## [1] "TFAP2A_5bp_10bp_minP_1"
## [1] "TFAP2A_5bp_10bp_minP_2"
## [1] "TFAP2A_5bp_10bp_minP_3"
## [1] "TFAP2A_5bp_21bp_mCMV_1"
## [1] "TFAP2A_5bp_21bp_mCMV_2"
## [1] "TFAP2A_5bp_21bp_mCMV_3"
## [1] "TFAP2A_5bp_21bp_minP_1"
## [1] "TFAP2A_5bp_21bp_minP_2"
## [1] "TFAP2A_5bp_21bp_minP_3"
## [1] "TFAP2A_romanov_NA_10bp_mCMV_NA"
## [1] "TFAP2A_romanov_NA_10bp_minP_NA"
## [1] "TFAP2A_romanov_NA_21bp_mCMV_NA"
## [1] "TFAP2A_romanov_NA_21bp_minP_NA"
## [1] "TFCP2L1_10bp_10bp_hBGm_1"
## [1] "TFCP2L1_10bp_10bp_hBGm_2"
## [1] "TFCP2L1_10bp_10bp_hBGm_3"
## [1] "TFCP2L1_10bp_10bp_mCMV_1"
## [1] "TFCP2L1_10bp_10bp_mCMV_2"
## [1] "TFCP2L1_10bp_10bp_mCMV_3"
## [1] "TFCP2L1_10bp_10bp_minP_1"
## [1] "TFCP2L1_10bp_10bp_minP_2"
## [1] "TFCP2L1_10bp_10bp_minP_3"
## [1] "TFCP2L1_10bp_21bp_Random_1"
## [1] "TFCP2L1_10bp_21bp_hBGm_1"
## [1] "TFCP2L1_10bp_21bp_hBGm_2"
## [1] "TFCP2L1_10bp_21bp_hBGm_3"
## [1] "TFCP2L1_10bp_21bp_mCMV_1"
## [1] "TFCP2L1_10bp_21bp_mCMV_2"
## [1] "TFCP2L1_10bp_21bp_mCMV_3"
## [1] "TFCP2L1_10bp_21bp_minP_1"
## [1] "TFCP2L1_10bp_21bp_minP_2"
## [1] "TFCP2L1_10bp_21bp_minP_3"
## [1] "TFCP2L1_5bp_10bp_hBGm_1"
## [1] "TFCP2L1_5bp_10bp_hBGm_2"
## [1] "TFCP2L1_5bp_10bp_hBGm_3"
## [1] "TFCP2L1_5bp_10bp_mCMV_1"
## [1] "TFCP2L1_5bp_10bp_mCMV_2"
## [1] "TFCP2L1_5bp_10bp_mCMV_3"
## [1] "TFCP2L1_5bp_10bp_minP_1"
## [1] "TFCP2L1_5bp_10bp_minP_2"
## [1] "TFCP2L1_5bp_10bp_minP_3"
## [1] "TFCP2L1_5bp_21bp_hBGm_1"
## [1] "TFCP2L1_5bp_21bp_hBGm_2"
## [1] "TFCP2L1_5bp_21bp_hBGm_3"
## [1] "TFCP2L1_5bp_21bp_mCMV_1"
## [1] "TFCP2L1_5bp_21bp_mCMV_2"
## [1] "TFCP2L1_5bp_21bp_mCMV_3"
## [1] "TFCP2L1_5bp_21bp_minP_1"
## [1] "TFCP2L1_5bp_21bp_minP_2"
## [1] "TFCP2L1_5bp_21bp_minP_3"
## [1] "TFEB_TF-seq_NA_10bp_mCMV_NA"
## [1] "TFEB_TF-seq_NA_10bp_minP_NA"
## [1] "TFEB_TF-seq_NA_21bp_mCMV_NA"
## [1] "TFEB_TF-seq_NA_21bp_minP_NA"
## [1] "THRA_10bp_10bp_mCMV_1"
## [1] "THRA_10bp_10bp_mCMV_2"
## [1] "THRA_10bp_10bp_mCMV_3"
## [1] "THRA_10bp_10bp_minP_1"
## [1] "THRA_10bp_10bp_minP_2"
## [1] "THRA_10bp_10bp_minP_3"
## [1] "THRA_10bp_21bp_Random_1"
## [1] "THRA_10bp_21bp_mCMV_1"
## [1] "THRA_10bp_21bp_mCMV_2"
## [1] "THRA_10bp_21bp_mCMV_3"
## [1] "THRA_10bp_21bp_minP_1"
## [1] "THRA_10bp_21bp_minP_2"
## [1] "THRA_10bp_21bp_minP_3"
## [1] "THRA_5bp_10bp_mCMV_1"
## [1] "THRA_5bp_10bp_mCMV_2"
## [1] "THRA_5bp_10bp_mCMV_3"
## [1] "THRA_5bp_10bp_minP_1"
## [1] "THRA_5bp_10bp_minP_2"
## [1] "THRA_5bp_10bp_minP_3"
## [1] "THRA_5bp_21bp_mCMV_1"
## [1] "THRA_5bp_21bp_mCMV_2"
## [1] "THRA_5bp_21bp_mCMV_3"
## [1] "THRA_5bp_21bp_minP_1"
## [1] "THRA_5bp_21bp_minP_2"
## [1] "THRA_5bp_21bp_minP_3"
## [1] "THRB_10bp_10bp_mCMV_1"
## [1] "THRB_10bp_10bp_mCMV_2"
## [1] "THRB_10bp_10bp_mCMV_3"
## [1] "THRB_10bp_10bp_minP_1"
## [1] "THRB_10bp_10bp_minP_2"
## [1] "THRB_10bp_10bp_minP_3"
## [1] "THRB_10bp_21bp_Random_1"
## [1] "THRB_10bp_21bp_mCMV_1"
## [1] "THRB_10bp_21bp_mCMV_2"
## [1] "THRB_10bp_21bp_mCMV_3"
## [1] "THRB_10bp_21bp_minP_1"
## [1] "THRB_10bp_21bp_minP_2"
## [1] "THRB_10bp_21bp_minP_3"
## [1] "THRB_5bp_10bp_mCMV_1"
## [1] "THRB_5bp_10bp_mCMV_2"
## [1] "THRB_5bp_10bp_mCMV_3"
## [1] "THRB_5bp_10bp_minP_1"
## [1] "THRB_5bp_10bp_minP_2"
## [1] "THRB_5bp_10bp_minP_3"
## [1] "THRB_5bp_21bp_mCMV_1"
## [1] "THRB_5bp_21bp_mCMV_2"
## [1] "THRB_5bp_21bp_mCMV_3"
## [1] "THRB_5bp_21bp_minP_1"
## [1] "THRB_5bp_21bp_minP_2"
## [1] "THRB_5bp_21bp_minP_3"
## [1] "TP53_10bp_10bp_hBGm_1"
## [1] "TP53_10bp_10bp_hBGm_2"
## [1] "TP53_10bp_10bp_hBGm_3"
## [1] "TP53_10bp_10bp_mCMV_1"
## [1] "TP53_10bp_10bp_mCMV_2"
## [1] "TP53_10bp_10bp_mCMV_3"
## [1] "TP53_10bp_10bp_minP_1"
## [1] "TP53_10bp_10bp_minP_2"
## [1] "TP53_10bp_10bp_minP_3"
## [1] "TP53_10bp_21bp_Random_1"
## [1] "TP53_10bp_21bp_hBGm_1"
## [1] "TP53_10bp_21bp_hBGm_2"
## [1] "TP53_10bp_21bp_hBGm_3"
## [1] "TP53_10bp_21bp_mCMV_1"
## [1] "TP53_10bp_21bp_mCMV_2"
## [1] "TP53_10bp_21bp_mCMV_3"
## [1] "TP53_10bp_21bp_minP_1"
## [1] "TP53_10bp_21bp_minP_2"
## [1] "TP53_10bp_21bp_minP_3"
## [1] "TP53_5bp_10bp_hBGm_1"
## [1] "TP53_5bp_10bp_hBGm_2"
## [1] "TP53_5bp_10bp_hBGm_3"
## [1] "TP53_5bp_10bp_mCMV_1"
## [1] "TP53_5bp_10bp_mCMV_2"
## [1] "TP53_5bp_10bp_mCMV_3"
## [1] "TP53_5bp_10bp_minP_1"
## [1] "TP53_5bp_10bp_minP_2"
## [1] "TP53_5bp_10bp_minP_3"
## [1] "TP53_5bp_21bp_hBGm_1"
## [1] "TP53_5bp_21bp_hBGm_2"
## [1] "TP53_5bp_21bp_hBGm_3"
## [1] "TP53_5bp_21bp_mCMV_1"
## [1] "TP53_5bp_21bp_mCMV_2"
## [1] "TP53_5bp_21bp_mCMV_3"
## [1] "TP53_5bp_21bp_minP_1"
## [1] "TP53_5bp_21bp_minP_2"
## [1] "TP53_5bp_21bp_minP_3"
## [1] "TP53_promega_NA_10bp_mCMV_NA"
## [1] "TP53_promega_NA_10bp_minP_NA"
## [1] "TP53_promega_NA_21bp_mCMV_NA"
## [1] "TP53_promega_NA_21bp_minP_NA"
## [1] "TP53_promega_long_NA_10bp_mCMV_NA"
## [1] "TP53_promega_long_NA_10bp_minP_NA"
## [1] "TP53_romanov_NA_10bp_mCMV_NA"
## [1] "TP53_romanov_NA_10bp_minP_NA"
## [1] "TP53_romanov_NA_21bp_mCMV_NA"
## [1] "TP53_romanov_NA_21bp_minP_NA"
## [1] "T_10bp_10bp_mCMV_1"
## [1] "T_10bp_10bp_mCMV_2"
## [1] "T_10bp_10bp_mCMV_3"
## [1] "T_10bp_10bp_minP_1"
## [1] "T_10bp_10bp_minP_2"
## [1] "T_10bp_10bp_minP_3"
## [1] "T_10bp_21bp_Random_1"
## [1] "T_10bp_21bp_mCMV_1"
## [1] "T_10bp_21bp_mCMV_2"
## [1] "T_10bp_21bp_mCMV_3"
## [1] "T_10bp_21bp_minP_1"
## [1] "T_10bp_21bp_minP_2"
## [1] "T_10bp_21bp_minP_3"
## [1] "T_5bp_10bp_mCMV_1"
## [1] "T_5bp_10bp_mCMV_2"
## [1] "T_5bp_10bp_mCMV_3"
## [1] "T_5bp_10bp_minP_1"
## [1] "T_5bp_10bp_minP_2"
## [1] "T_5bp_10bp_minP_3"
## [1] "T_5bp_21bp_mCMV_1"
## [1] "T_5bp_21bp_mCMV_2"
## [1] "T_5bp_21bp_mCMV_3"
## [1] "T_5bp_21bp_minP_1"
## [1] "T_5bp_21bp_minP_2"
## [1] "T_5bp_21bp_minP_3"
## [1] "VDR::RXRA_10bp_10bp_mCMV_1"
## [1] "VDR::RXRA_10bp_10bp_mCMV_2"
## [1] "VDR::RXRA_10bp_10bp_mCMV_3"
## [1] "VDR::RXRA_10bp_10bp_minP_1"
## [1] "VDR::RXRA_10bp_10bp_minP_2"
## [1] "VDR::RXRA_10bp_10bp_minP_3"
## [1] "VDR::RXRA_10bp_21bp_Random_1"
## [1] "VDR::RXRA_10bp_21bp_mCMV_1"
## [1] "VDR::RXRA_10bp_21bp_mCMV_2"
## [1] "VDR::RXRA_10bp_21bp_mCMV_3"
## [1] "VDR::RXRA_10bp_21bp_minP_1"
## [1] "VDR::RXRA_10bp_21bp_minP_2"
## [1] "VDR::RXRA_10bp_21bp_minP_3"
## [1] "VDR::RXRA_5bp_10bp_mCMV_1"
## [1] "VDR::RXRA_5bp_10bp_mCMV_2"
## [1] "VDR::RXRA_5bp_10bp_mCMV_3"
## [1] "VDR::RXRA_5bp_10bp_minP_1"
## [1] "VDR::RXRA_5bp_10bp_minP_2"
## [1] "VDR::RXRA_5bp_10bp_minP_3"
## [1] "VDR::RXRA_5bp_21bp_mCMV_1"
## [1] "VDR::RXRA_5bp_21bp_mCMV_2"
## [1] "VDR::RXRA_5bp_21bp_mCMV_3"
## [1] "VDR::RXRA_5bp_21bp_minP_1"
## [1] "VDR::RXRA_5bp_21bp_minP_2"
## [1] "VDR::RXRA_5bp_21bp_minP_3"
## [1] "VDR::RXRA_TF-seq_NA_10bp_mCMV_NA"
## [1] "VDR::RXRA_TF-seq_NA_10bp_minP_NA"
## [1] "VDR::RXRA_TF-seq_NA_21bp_mCMV_NA"
## [1] "VDR::RXRA_TF-seq_NA_21bp_minP_NA"
## [1] "WT1_10bp_10bp_mCMV_1"
## [1] "WT1_10bp_10bp_mCMV_2"
## [1] "WT1_10bp_10bp_mCMV_3"
## [1] "WT1_10bp_10bp_minP_1"
## [1] "WT1_10bp_10bp_minP_2"
## [1] "WT1_10bp_10bp_minP_3"
## [1] "WT1_10bp_21bp_Random_1"
## [1] "WT1_10bp_21bp_mCMV_1"
## [1] "WT1_10bp_21bp_mCMV_2"
## [1] "WT1_10bp_21bp_mCMV_3"
## [1] "WT1_10bp_21bp_minP_1"
## [1] "WT1_10bp_21bp_minP_2"
## [1] "WT1_10bp_21bp_minP_3"
## [1] "WT1_5bp_10bp_mCMV_1"
## [1] "WT1_5bp_10bp_mCMV_2"
## [1] "WT1_5bp_10bp_mCMV_3"
## [1] "WT1_5bp_10bp_minP_1"
## [1] "WT1_5bp_10bp_minP_2"
## [1] "WT1_5bp_10bp_minP_3"
## [1] "WT1_5bp_21bp_mCMV_1"
## [1] "WT1_5bp_21bp_mCMV_2"
## [1] "WT1_5bp_21bp_mCMV_3"
## [1] "WT1_5bp_21bp_minP_1"
## [1] "WT1_5bp_21bp_minP_2"
## [1] "WT1_5bp_21bp_minP_3"
## [1] "XBP1_10bp_10bp_mCMV_1"
## [1] "XBP1_10bp_10bp_mCMV_2"
## [1] "XBP1_10bp_10bp_mCMV_3"
## [1] "XBP1_10bp_10bp_minP_1"
## [1] "XBP1_10bp_10bp_minP_2"
## [1] "XBP1_10bp_10bp_minP_3"
## [1] "XBP1_10bp_21bp_Random_1"
## [1] "XBP1_10bp_21bp_mCMV_1"
## [1] "XBP1_10bp_21bp_mCMV_2"
## [1] "XBP1_10bp_21bp_mCMV_3"
## [1] "XBP1_10bp_21bp_minP_1"
## [1] "XBP1_10bp_21bp_minP_2"
## [1] "XBP1_10bp_21bp_minP_3"
## [1] "XBP1_5bp_10bp_mCMV_1"
## [1] "XBP1_5bp_10bp_mCMV_2"
## [1] "XBP1_5bp_10bp_mCMV_3"
## [1] "XBP1_5bp_10bp_minP_1"
## [1] "XBP1_5bp_10bp_minP_2"
## [1] "XBP1_5bp_10bp_minP_3"
## [1] "XBP1_5bp_21bp_mCMV_1"
## [1] "XBP1_5bp_21bp_mCMV_2"
## [1] "XBP1_5bp_21bp_mCMV_3"
## [1] "XBP1_5bp_21bp_minP_1"
## [1] "XBP1_5bp_21bp_minP_2"
## [1] "XBP1_5bp_21bp_minP_3"
## [1] "XBP1_TF-seq_NA_10bp_mCMV_NA"
## [1] "XBP1_TF-seq_NA_10bp_minP_NA"
## [1] "XBP1_TF-seq_NA_21bp_mCMV_NA"
## [1] "XBP1_TF-seq_NA_21bp_minP_NA"
## [1] "XBP1_promega_NA_10bp_mCMV_NA"
## [1] "XBP1_promega_NA_10bp_minP_NA"
## [1] "XBP1_promega_NA_21bp_mCMV_NA"
## [1] "XBP1_promega_NA_21bp_minP_NA"
## [1] "XBP1_promega_long_NA_10bp_mCMV_NA"
## [1] "XBP1_promega_long_NA_10bp_minP_NA"
## [1] "XBP1_romanov_NA_10bp_mCMV_NA"
## [1] "XBP1_romanov_NA_10bp_minP_NA"
## [1] "XBP1_romanov_NA_21bp_mCMV_NA"
## [1] "XBP1_romanov_NA_21bp_minP_NA"
## [1] "ZFP42_10bp_10bp_hBGm_1"
## [1] "ZFP42_10bp_10bp_hBGm_2"
## [1] "ZFP42_10bp_10bp_hBGm_3"
## [1] "ZFP42_10bp_10bp_mCMV_1"
## [1] "ZFP42_10bp_10bp_mCMV_2"
## [1] "ZFP42_10bp_10bp_mCMV_3"
## [1] "ZFP42_10bp_10bp_minP_1"
## [1] "ZFP42_10bp_10bp_minP_2"
## [1] "ZFP42_10bp_10bp_minP_3"
## [1] "ZFP42_10bp_21bp_Random_1"
## [1] "ZFP42_10bp_21bp_hBGm_1"
## [1] "ZFP42_10bp_21bp_hBGm_2"
## [1] "ZFP42_10bp_21bp_hBGm_3"
## [1] "ZFP42_10bp_21bp_mCMV_1"
## [1] "ZFP42_10bp_21bp_mCMV_2"
## [1] "ZFP42_10bp_21bp_mCMV_3"
## [1] "ZFP42_10bp_21bp_minP_1"
## [1] "ZFP42_10bp_21bp_minP_2"
## [1] "ZFP42_10bp_21bp_minP_3"
## [1] "ZFP42_5bp_10bp_hBGm_1"
## [1] "ZFP42_5bp_10bp_hBGm_2"
## [1] "ZFP42_5bp_10bp_hBGm_3"
## [1] "ZFP42_5bp_10bp_mCMV_1"
## [1] "ZFP42_5bp_10bp_mCMV_2"
## [1] "ZFP42_5bp_10bp_mCMV_3"
## [1] "ZFP42_5bp_10bp_minP_1"
## [1] "ZFP42_5bp_10bp_minP_2"
## [1] "ZFP42_5bp_10bp_minP_3"
## [1] "ZFP42_5bp_21bp_hBGm_1"
## [1] "ZFP42_5bp_21bp_hBGm_2"
## [1] "ZFP42_5bp_21bp_hBGm_3"
## [1] "ZFP42_5bp_21bp_mCMV_1"
## [1] "ZFP42_5bp_21bp_mCMV_2"
## [1] "ZFP42_5bp_21bp_mCMV_3"
## [1] "ZFP42_5bp_21bp_minP_1"
## [1] "ZFP42_5bp_21bp_minP_2"
## [1] "ZFP42_5bp_21bp_minP_3"
## [1] "ZFX_10bp_10bp_hBGm_1"
## [1] "ZFX_10bp_10bp_hBGm_2"
## [1] "ZFX_10bp_10bp_hBGm_3"
## [1] "ZFX_10bp_10bp_mCMV_1"
## [1] "ZFX_10bp_10bp_mCMV_2"
## [1] "ZFX_10bp_10bp_mCMV_3"
## [1] "ZFX_10bp_10bp_minP_1"
## [1] "ZFX_10bp_10bp_minP_2"
## [1] "ZFX_10bp_10bp_minP_3"
## [1] "ZFX_10bp_21bp_Random_1"
## [1] "ZFX_10bp_21bp_hBGm_1"
## [1] "ZFX_10bp_21bp_hBGm_2"
## [1] "ZFX_10bp_21bp_hBGm_3"
## [1] "ZFX_10bp_21bp_mCMV_1"
## [1] "ZFX_10bp_21bp_mCMV_2"
## [1] "ZFX_10bp_21bp_mCMV_3"
## [1] "ZFX_10bp_21bp_minP_1"
## [1] "ZFX_10bp_21bp_minP_2"
## [1] "ZFX_10bp_21bp_minP_3"
## [1] "ZFX_5bp_10bp_hBGm_1"
## [1] "ZFX_5bp_10bp_hBGm_2"
## [1] "ZFX_5bp_10bp_hBGm_3"
## [1] "ZFX_5bp_10bp_mCMV_1"
## [1] "ZFX_5bp_10bp_mCMV_2"
## [1] "ZFX_5bp_10bp_mCMV_3"
## [1] "ZFX_5bp_10bp_minP_1"
## [1] "ZFX_5bp_10bp_minP_2"
## [1] "ZFX_5bp_10bp_minP_3"
## [1] "ZFX_5bp_21bp_hBGm_1"
## [1] "ZFX_5bp_21bp_hBGm_2"
## [1] "ZFX_5bp_21bp_hBGm_3"
## [1] "ZFX_5bp_21bp_mCMV_1"
## [1] "ZFX_5bp_21bp_mCMV_2"
## [1] "ZFX_5bp_21bp_mCMV_3"
## [1] "ZFX_5bp_21bp_minP_1"
## [1] "ZFX_5bp_21bp_minP_2"
## [1] "ZFX_5bp_21bp_minP_3"pval_list <- pval_list[lengths(pval_list) > 0]
pval_df <- data.frame(bind_rows(pval_list))
rownames(pval_df) <- names(pval_list)
pval_df <- as.data.frame(pval_df)
pval_df <- pval_df %>%
rownames_to_column("reporter_id2") %>%
pivot_longer(-reporter_id2, names_to = "id", values_to = "pval_neg") %>%
mutate(id = gsub("1.2", "1+2", id)) %>%
na.omit()
bc_df_cDNA_filt <- merge(bc_df_cDNA_filt, pval_df, by = c("reporter_id2", "id"), all = T)Calculate correlations between technical replicates
## Identify and relabel double reporters
bc_df_12 <- bc_df_cDNA_filt %>%
filter(nchar == 12, library == "1+2")
bc_df_13 <- bc_df_cDNA_filt %>%
filter(nchar == 13, library == "1+2")
double_reporters <- unique(bc_df_13$reporter_id[bc_df_13$reporter_id %in% bc_df_12$reporter_id])
double_reporters_df <- bc_df_cDNA_filt %>%
filter(reporter_id %in% double_reporters, library == "1+2", nchar == 13)
double_reporters_df$reporter_id_2 <- paste(double_reporters_df$reporter_id, double_reporters_df$nchar)
bc_df_cDNA_filt$reporter_id_2 <- paste(bc_df_cDNA_filt$reporter_id, bc_df_cDNA_filt$nchar)
bc_df_cDNA_filt <- bc_df_cDNA_filt[!bc_df_cDNA_filt$reporter_id_2 %in% double_reporters_df$reporter_id_2,] %>%
dplyr::select(-reporter_id_2)
double_reporters_df <- double_reporters_df %>%
dplyr::select(-reporter_id_2)
double_reporters_df$barcode_number[double_reporters_df$barcode_number == 1] <- 9
double_reporters_df$barcode_number[double_reporters_df$barcode_number == 2] <- 10
double_reporters_df$barcode_number[double_reporters_df$barcode_number == 3] <- 11
double_reporters_df$barcode_number[double_reporters_df$barcode_number == 4] <- 12
double_reporters_df$barcode_number[double_reporters_df$barcode_number == 5] <- 13
bc_df_cDNA_filt <- rbind(bc_df_cDNA_filt, double_reporters_df)
## Combine replicates in 8 different columns
bc_df_rep <- bc_df_cDNA_filt %>%
filter(commercial_reporter == "No", rand_promoter == "No", native_enhancer == "No", hPGK == "No") %>%
dplyr::select(barcode_number, activity, sample_id, reporter_id, neg_ctrls, library) %>%
spread(barcode_number, activity)
names(bc_df_rep) <- gsub("([1-9]{1})", "TR\\1", names(bc_df_rep))
for (i in unique(bc_df_rep$library)) {
p <- ggscatter(bc_df_rep[bc_df_rep$library == i,], x = "TR1", y = "TR2",
add = "reg.line",
color = "neg_ctrls",
size = 0.5,
add.params = list(color = "blue", fill = "lightgray"),
title = paste("rep1 vs rep2 - library:", i),
conf.int = TRUE, ylab = "rep2", xlab = "rep1") +
stat_cor(method = "pearson", label.x = 4, label.y = 0) +
geom_abline(linetype = "dashed") +
xlim(0,50) + ylim(0,50) +
scale_color_manual(values = colors) +
facet_wrap(~sample_id)
print(p)
}## `geom_smooth()` using formula 'y ~ x'
## `geom_smooth()` using formula 'y ~ x'
## `geom_smooth()` using formula 'y ~ x'
# Correlation matrix plot
n <- sample(1:nrow(bc_df_rep), 5000)
boundaries <- seq(from = 0.8, by = 0.05, length.out = 4)
plt <- ggpairs(bc_df_rep %>% filter(library == "1") %>% dplyr::select('TR1', 'TR2', 'TR3', 'TR4', 'TR5', 'TR6', 'TR7', 'TR8'),
upper = list(continuous = corColor),
lower = list(continuous = function(data, mapping, ...) {
ggally_points(data = data[n, ], mapping = mapping, alpha = 0.1, size = 0.5) +
geom_abline(slope = 1, lty = "dashed", col = "red") +
theme_bw()}),
diag = list(continuous = function(data, mapping, ...) {
ggally_densityDiag(data = data, mapping = mapping, alpha = 0.3, fill = "red") +
theme_bw()})) +
ggtitle("Correlation Between Technial Replicates") +
theme(text = element_text(size = 20)) +
xlab("Reporter activity") +
ylab("Reporter activity")
print(plt)
Correlation between replicates
# Correlation plots of the replicates
## Combine replicates of normalized data in 3 different columns
bc_df_rep <- bc_df_cDNA_filt %>%
dplyr::select(replicate, mean_activity_sample_minP, reporter_id, condition, neg_ctrls, library, gcf) %>%
unique() %>%
spread(replicate, mean_activity_sample_minP)
colors <- c("#2D3047", "#1B998B")
for (i in unique(bc_df_rep$library)) {
p <- ggscatter(bc_df_rep[bc_df_rep$library == i,], x = "r1", y = "r2",
add = "reg.line",
color = "neg_ctrls",
size = 0.5,
add.params = list(color = "blue", fill = "lightgray"),
title = paste("rep1 vs rep2 - library:", i),
conf.int = TRUE, ylab = "rep2", xlab = "rep1") +
stat_cor(method = "pearson", label.x = 4, label.y = 0) +
geom_abline(linetype = "dashed") +
xlim(0,50) + ylim(0,50) +
scale_color_manual(values = colors) +
facet_wrap(~condition)
print(p)
}## `geom_smooth()` using formula 'y ~ x'
## `geom_smooth()` using formula 'y ~ x'
## `geom_smooth()` using formula 'y ~ x'
for (i in unique(bc_df_rep$library)) {
p <- ggscatter(bc_df_rep[bc_df_rep$library == i,], x = "r1", y = "r3",
add = "reg.line",
color = "neg_ctrls",
size = 0.5,
add.params = list(color = "blue", fill = "lightgray"),
title = paste("rep1 vs rep3 - library:", i),
conf.int = TRUE, ylab = "rep3", xlab = "rep1") +
stat_cor(method = "pearson", label.x = 4, label.y = 0) +
geom_abline(linetype = "dashed") +
xlim(0,50) + ylim(0,50) +
scale_color_manual(values = colors) +
facet_wrap(~condition)
print(p)
}## `geom_smooth()` using formula 'y ~ x'
## `geom_smooth()` using formula 'y ~ x'
## `geom_smooth()` using formula 'y ~ x'
for (i in unique(bc_df_rep$library)) {
p <- ggscatter(bc_df_rep[bc_df_rep$library == i,], x = "r2", y = "r3",
add = "reg.line",
color = "neg_ctrls",
size = 0.5,
add.params = list(color = "blue", fill = "lightgray"),
title = paste("rep2 vs rep3 - library:", i),
conf.int = TRUE, ylab = "rep3", xlab = "rep2") +
stat_cor(method = "pearson", label.x = 4, label.y = 0) +
geom_abline(linetype = "dashed") +
xlim(0,50) + ylim(0,50) +
scale_color_manual(values = colors) +
facet_wrap(~condition)
print(p)
}## `geom_smooth()` using formula 'y ~ x'
## `geom_smooth()` using formula 'y ~ x'
## `geom_smooth()` using formula 'y ~ x'
# Mean of the three replicates
bc_df_cDNA_filt$reporter_activity <- ave(bc_df_cDNA_filt$mean_activity_sample, bc_df_cDNA_filt$reporter_id, bc_df_cDNA_filt$condition, FUN = function(x) mean(x))
bc_df_cDNA_filt$reporter_activity_minP <- ave(bc_df_cDNA_filt$mean_activity_sample_minP, bc_df_cDNA_filt$reporter_id, bc_df_cDNA_filt$condition, FUN = function(x) mean(x))
bc_df_cDNA_filt$reporter_activity_nfya <- ave(bc_df_cDNA_filt$mean_activity_sample_nfya, bc_df_cDNA_filt$reporter_id, bc_df_cDNA_filt$condition, FUN = function(x) mean(x))
bc_df_cDNA_filt$reporter_activity_neg <- ave(bc_df_cDNA_filt$mean_activity_sample_neg, bc_df_cDNA_filt$reporter_id, bc_df_cDNA_filt$condition, FUN = function(x) mean(x))
# Polish export dataframe
bc_df_cDNA_filt <- bc_df_cDNA_filt %>%
dplyr::select(-upper_activity, -lower_activity,
-high_outlier, -low_outlier, -match, -pMT02, -pMT09, -pMT09_02, -mean_activity, -sd_activity)
# Export bc_df for cDNA analysis
filename <- SetFileName("_reporter_activity_filt_combined", "mt")
setwd("/DATA/usr/m.trauernicht/projects/SuRE-TF/data/gcf6578_gen2_stimulation-2/results/")
write.csv(bc_df_cDNA_filt, file = paste(filename,".csv", sep = ""), row.names = F)Session Info
paste("Run time: ",format(Sys.time()-StartTime))## [1] "Run time: 23.08863 mins"getwd()## [1] "/DATA/usr/m.trauernicht/projects/SuRE-TF/analyses"date()## [1] "Tue Dec 21 13:13:25 2021"sessionInfo()## R version 4.0.5 (2021-03-31)
## Platform: x86_64-pc-linux-gnu (64-bit)
## Running under: Ubuntu 20.04.3 LTS
##
## Matrix products: default
## BLAS: /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3
## LAPACK: /usr/lib/x86_64-linux-gnu/openblas-pthread/liblapack.so.3
##
## locale:
## [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
## [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
## [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
## [7] LC_PAPER=en_US.UTF-8 LC_NAME=C
## [9] LC_ADDRESS=C LC_TELEPHONE=C
## [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
##
## attached base packages:
## [1] stats4 parallel stats graphics grDevices utils datasets
## [8] methods base
##
## other attached packages:
## [1] pheatmap_1.0.12 PCAtools_2.2.0
## [3] ggrepel_0.9.1 DESeq2_1.30.1
## [5] SummarizedExperiment_1.20.0 Biobase_2.50.0
## [7] MatrixGenerics_1.2.1 matrixStats_0.59.0
## [9] GenomicRanges_1.42.0 GenomeInfoDb_1.26.7
## [11] IRanges_2.24.1 S4Vectors_0.28.1
## [13] BiocGenerics_0.36.1 viridis_0.6.1
## [15] viridisLite_0.4.0 grr_0.9.5
## [17] tidyr_1.1.3 LncFinder_1.1.4
## [19] gridExtra_2.3 RColorBrewer_1.1-2
## [21] readr_1.4.0 haven_2.4.1
## [23] ggbeeswarm_0.6.0 plotly_4.9.4.1
## [25] tibble_3.1.2 dplyr_1.0.7
## [27] vwr_0.3.0 latticeExtra_0.6-29
## [29] lattice_0.20-41 stringdist_0.9.6.3
## [31] GGally_2.1.2 ggpubr_0.4.0
## [33] ggplot2_3.3.5 stringr_1.4.0
## [35] plyr_1.8.6 data.table_1.14.0
##
## loaded via a namespace (and not attached):
## [1] readxl_1.3.1 backports_1.2.1
## [3] lazyeval_0.2.2 splines_4.0.5
## [5] crosstalk_1.1.1 BiocParallel_1.24.1
## [7] digest_0.6.27 foreach_1.5.1
## [9] htmltools_0.5.1.1 fansi_0.5.0
## [11] memoise_2.0.0 magrittr_2.0.1
## [13] openxlsx_4.2.4 recipes_0.1.16
## [15] annotate_1.68.0 gower_0.2.2
## [17] jpeg_0.1-8.1 colorspace_2.0-2
## [19] blob_1.2.1 xfun_0.24
## [21] crayon_1.4.1 RCurl_1.98-1.3
## [23] jsonlite_1.7.2 genefilter_1.72.1
## [25] survival_3.2-10 iterators_1.0.13
## [27] glue_1.4.2 gtable_0.3.0
## [29] ipred_0.9-11 zlibbioc_1.36.0
## [31] XVector_0.30.0 seqinr_4.2-8
## [33] DelayedArray_0.16.3 BiocSingular_1.6.0
## [35] car_3.0-11 abind_1.4-5
## [37] scales_1.1.1 DBI_1.1.1
## [39] rstatix_0.7.0 Rcpp_1.0.7
## [41] xtable_1.8-4 dqrng_0.3.0
## [43] rsvd_1.0.5 foreign_0.8-81
## [45] bit_4.0.4 proxy_0.4-26
## [47] lava_1.6.9 prodlim_2019.11.13
## [49] htmlwidgets_1.5.3 httr_1.4.2
## [51] ellipsis_0.3.2 farver_2.1.0
## [53] pkgconfig_2.0.3 reshape_0.8.8
## [55] XML_3.99-0.6 nnet_7.3-16
## [57] sass_0.4.0 locfit_1.5-9.4
## [59] utf8_1.2.1 caret_6.0-88
## [61] labeling_0.4.2 tidyselect_1.1.1
## [63] rlang_0.4.11 reshape2_1.4.4
## [65] AnnotationDbi_1.52.0 cachem_1.0.5
## [67] munsell_0.5.0 cellranger_1.1.0
## [69] tools_4.0.5 cli_3.0.0
## [71] generics_0.1.0 RSQLite_2.2.7
## [73] ade4_1.7-17 broom_0.7.8
## [75] fastmap_1.1.0 evaluate_0.14
## [77] yaml_2.2.1 ModelMetrics_1.2.2.2
## [79] knitr_1.33 bit64_4.0.5
## [81] zip_2.2.0 purrr_0.3.4
## [83] sparseMatrixStats_1.2.1 nlme_3.1-152
## [85] rstudioapi_0.13 compiler_4.0.5
## [87] beeswarm_0.4.0 curl_4.3.2
## [89] png_0.1-7 e1071_1.7-7
## [91] ggsignif_0.6.2 geneplotter_1.68.0
## [93] bslib_0.2.5.1 stringi_1.7.2
## [95] highr_0.9 forcats_0.5.1
## [97] Matrix_1.3-2 vctrs_0.3.8
## [99] pillar_1.6.1 lifecycle_1.0.0
## [101] jquerylib_0.1.4 irlba_2.3.3
## [103] cowplot_1.1.1 bitops_1.0-7
## [105] R6_2.5.0 rio_0.5.27
## [107] vipor_0.4.5 codetools_0.2-18
## [109] MASS_7.3-53.1 assertthat_0.2.1
## [111] withr_2.4.2 GenomeInfoDbData_1.2.4
## [113] mgcv_1.8-34 hms_1.1.0
## [115] beachmat_2.6.4 grid_4.0.5
## [117] rpart_4.1-15 timeDate_3043.102
## [119] class_7.3-18 DelayedMatrixStats_1.12.3
## [121] rmarkdown_2.11 carData_3.0-4
## [123] pROC_1.17.0.1 lubridate_1.7.10